Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 22

1.

The Barcode, UMI, Set format and BUStools.

Melsted P, Ntranos V, Pachter L.

Bioinformatics. 2019 May 9. pii: btz279. doi: 10.1093/bioinformatics/btz279. [Epub ahead of print]

PMID:
31073610
2.

A PRPH splice-donor variant associates with reduced sural nerve amplitude and risk of peripheral neuropathy.

Bjornsdottir G, Ivarsdottir EV, Bjarnadottir K, Benonisdottir S, Gylfadottir SS, Arnadottir GA, Benediktsson R, Halldorsson GH, Helgadottir A, Jonasdottir A, Jonasdottir A, Jonsdottir I, Kristinsdottir AM, Magnusson OT, Masson G, Melsted P, Rafnar T, Sigurdsson A, Sigurdsson G, Skuladottir A, Steinthorsdottir V, Styrkarsdottir U, Thorgeirsson G, Thorleifsson G, Vikingsson A, Gudbjartsson DF, Holm H, Stefansson H, Thorsteinsdottir U, Norddahl GL, Sulem P, Thorgeirsson TE, Stefansson K.

Nat Commun. 2019 Apr 16;10(1):1777. doi: 10.1038/s41467-019-09719-4.

3.

A discriminative learning approach to differential expression analysis for single-cell RNA-seq.

Ntranos V, Yi L, Melsted P, Pachter L.

Nat Methods. 2019 Feb;16(2):163-166. doi: 10.1038/s41592-018-0303-9. Epub 2019 Jan 21.

PMID:
30664774
4.

Insights into imprinting from parent-of-origin phased methylomes and transcriptomes.

Zink F, Magnusdottir DN, Magnusson OT, Walker NJ, Morris TJ, Sigurdsson A, Halldorsson GH, Gudjonsson SA, Melsted P, Ingimundardottir H, Kristmundsdottir S, Alexandersson KF, Helgadottir A, Gudmundsson J, Rafnar T, Jonsdottir I, Holm H, Eyjolfsson GI, Sigurdardottir O, Olafsson I, Masson G, Gudbjartsson DF, Thorsteinsdottir U, Halldorsson BV, Stacey SN, Stefansson K.

Nat Genet. 2018 Nov;50(11):1542-1552. doi: 10.1038/s41588-018-0232-7. Epub 2018 Oct 22.

PMID:
30349119
5.

Coding variants in RPL3L and MYZAP increase risk of atrial fibrillation.

Thorolfsdottir RB, Sveinbjornsson G, Sulem P, Nielsen JB, Jonsson S, Halldorsson GH, Melsted P, Ivarsdottir EV, Davidsson OB, Kristjansson RP, Thorleifsson G, Helgadottir A, Gretarsdottir S, Norddahl G, Rajamani S, Torfason B, Valgardsson AS, Sverrisson JT, Tragante V, Holmen OL, Asselbergs FW, Roden DM, Darbar D, Pedersen TR, Sabatine MS, Willer CJ, Løchen ML, Halldorsson BV, Jonsdottir I, Hveem K, Arnar DO, Thorsteinsdottir U, Gudbjartsson DF, Holm H, Stefansson K.

Commun Biol. 2018 Jun 12;1:68. doi: 10.1038/s42003-018-0068-9. eCollection 2018.

6.

Graphtyper enables population-scale genotyping using pangenome graphs.

Eggertsson HP, Jonsson H, Kristmundsdottir S, Hjartarson E, Kehr B, Masson G, Zink F, Hjorleifsson KE, Jonasdottir A, Jonasdottir A, Jonsdottir I, Gudbjartsson DF, Melsted P, Stefansson K, Halldorsson BV.

Nat Genet. 2017 Nov;49(11):1654-1660. doi: 10.1038/ng.3964. Epub 2017 Sep 25.

PMID:
28945251
7.

Differential analysis of RNA-seq incorporating quantification uncertainty.

Pimentel H, Bray NL, Puente S, Melsted P, Pachter L.

Nat Methods. 2017 Jul;14(7):687-690. doi: 10.1038/nmeth.4324. Epub 2017 Jun 5.

PMID:
28581496
8.

Pseudoalignment for metagenomic read assignment.

Schaeffer L, Pimentel H, Bray N, Melsted P, Pachter L.

Bioinformatics. 2017 Jul 15;33(14):2082-2088. doi: 10.1093/bioinformatics/btx106.

9.

Diversity in non-repetitive human sequences not found in the reference genome.

Kehr B, Helgadottir A, Melsted P, Jonsson H, Helgason H, Jonasdottir A, Jonasdottir A, Sigurdsson A, Gylfason A, Halldorsson GH, Kristmundsdottir S, Thorgeirsson G, Olafsson I, Holm H, Thorsteinsdottir U, Sulem P, Helgason A, Gudbjartsson DF, Halldorsson BV, Stefansson K.

Nat Genet. 2017 Apr;49(4):588-593. doi: 10.1038/ng.3801. Epub 2017 Feb 27.

PMID:
28250455
10.

The Lair: a resource for exploratory analysis of published RNA-Seq data.

Pimentel H, Sturmfels P, Bray N, Melsted P, Pachter L.

BMC Bioinformatics. 2016 Dec 1;17(1):490.

11.

Erratum: Near-optimal probabilistic RNA-seq quantification.

Bray NL, Pimentel H, Melsted P, Pachter L.

Nat Biotechnol. 2016 Aug 9;34(8):888. doi: 10.1038/nbt0816-888d. No abstract available.

PMID:
27504780
12.

Mash: fast genome and metagenome distance estimation using MinHash.

Ondov BD, Treangen TJ, Melsted P, Mallonee AB, Bergman NH, Koren S, Phillippy AM.

Genome Biol. 2016 Jun 20;17(1):132. doi: 10.1186/s13059-016-0997-x.

13.

chopBAI: BAM index reduction solves I/O bottlenecks in the joint analysis of large sequencing cohorts.

Kehr B, Melsted P.

Bioinformatics. 2016 Jul 15;32(14):2202-4. doi: 10.1093/bioinformatics/btw149. Epub 2016 Mar 18.

PMID:
27153590
14.

Near-optimal probabilistic RNA-seq quantification.

Bray NL, Pimentel H, Melsted P, Pachter L.

Nat Biotechnol. 2016 May;34(5):525-7. doi: 10.1038/nbt.3519. Epub 2016 Apr 4. Erratum in: Nat Biotechnol. 2016 Aug 9;34(8):888.

PMID:
27043002
15.

Looking into the past - the reaction of three grouse species to climate change over the last million years using whole genome sequences.

Kozma R, Melsted P, Magnússon KP, Höglund J.

Mol Ecol. 2016 Jan;25(2):570-80. doi: 10.1111/mec.13496. Epub 2016 Jan 19.

PMID:
26607571
16.

BamHash: a checksum program for verifying the integrity of sequence data.

Óskarsdóttir A, Másson G, Melsted P.

Bioinformatics. 2016 Jan 1;32(1):140-1. doi: 10.1093/bioinformatics/btv539. Epub 2015 Sep 10.

PMID:
26363028
17.

PopIns: population-scale detection of novel sequence insertions.

Kehr B, Melsted P, Halldórsson BV.

Bioinformatics. 2016 Apr 1;32(7):961-7. doi: 10.1093/bioinformatics/btv273. Epub 2015 Apr 28.

PMID:
25926346
18.

KmerStream: streaming algorithms for k-mer abundance estimation.

Melsted P, Halldórsson BV.

Bioinformatics. 2014 Dec 15;30(24):3541-7. doi: 10.1093/bioinformatics/btu713. Epub 2014 Oct 28.

PMID:
25355787
19.

Comparative RNA sequencing reveals substantial genetic variation in endangered primates.

Perry GH, Melsted P, Marioni JC, Wang Y, Bainer R, Pickrell JK, Michelini K, Zehr S, Yoder AD, Stephens M, Pritchard JK, Gilad Y.

Genome Res. 2012 Apr;22(4):602-10. doi: 10.1101/gr.130468.111. Epub 2011 Dec 29.

20.

A genome sequence resource for the aye-aye (Daubentonia madagascariensis), a nocturnal lemur from Madagascar.

Perry GH, Reeves D, Melsted P, Ratan A, Miller W, Michelini K, Louis EE Jr, Pritchard JK, Mason CE, Gilad Y.

Genome Biol Evol. 2012;4(2):126-35. doi: 10.1093/gbe/evr132. Epub 2011 Dec 7.

21.

Efficient counting of k-mers in DNA sequences using a bloom filter.

Melsted P, Pritchard JK.

BMC Bioinformatics. 2011 Aug 10;12:333. doi: 10.1186/1471-2105-12-333.

22.

Genomic-scale capture and sequencing of endogenous DNA from feces.

Perry GH, Marioni JC, Melsted P, Gilad Y.

Mol Ecol. 2010 Dec;19(24):5332-44. doi: 10.1111/j.1365-294X.2010.04888.x. Epub 2010 Nov 3.

Supplemental Content

Loading ...
Support Center