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The role of the surface smear microbiome in the development of defective smear on surface-ripened red-smear cheese.

Ritschard JS, Amato L, Kumar Y, Müller B, Meile L, Schuppler M.

AIMS Microbiol. 2018 Oct 25;4(4):622-641. doi: 10.3934/microbiol.2018.4.622. eCollection 2018.


Screening of lactic acid bacteria and yeast strains to select adapted anti-fungal co-cultures for cocoa bean fermentation.

Romanens E, Freimüller Leischtfeld S, Volland A, Stevens MJA, Krähenmann U, Isele D, Fischer B, Meile L, Miescher Schwenninger S.

Int J Food Microbiol. 2019 Feb 2;290:262-272. doi: 10.1016/j.ijfoodmicro.2018.10.001. Epub 2018 Oct 9.


Transposable element insertions shape gene regulation and melanin production in a fungal pathogen of wheat.

Krishnan P, Meile L, Plissonneau C, Ma X, Hartmann FE, Croll D, McDonald BA, Sánchez-Vallet A.

BMC Biol. 2018 Jul 16;16(1):78. doi: 10.1186/s12915-018-0543-2.


Colorectal cancer-associated Streptococcus infantarius subsp. infantarius differ from a major dairy lineage providing evidence for pathogenic, pathobiont and food-grade lineages.

Kaindi DWM, Kogi-Makau W, Lule GN, Kreikemeyer B, Renault P, Bonfoh B, Otaru N, Schmid T, Meile L, Hattendorf J, Jans C.

Sci Rep. 2018 Jun 15;8(1):9181. doi: 10.1038/s41598-018-27383-4.


A fungal avirulence factor encoded in a highly plastic genomic region triggers partial resistance to septoria tritici blotch.

Meile L, Croll D, Brunner PC, Plissonneau C, Hartmann FE, McDonald BA, Sánchez-Vallet A.

New Phytol. 2018 Aug;219(3):1048-1061. doi: 10.1111/nph.15180. Epub 2018 Apr 25.


Clustering of Pan- and Core-genome of Lactobacillus provides Novel Evolutionary Insights for Differentiation.

Inglin RC, Meile L, Stevens MJA.

BMC Genomics. 2018 Apr 24;19(1):284. doi: 10.1186/s12864-018-4601-5.


Population Dynamics of Lactobacillus helveticus in Swiss Gruyère-Type Cheese Manufactured With Natural Whey Cultures.

Moser A, Schafroth K, Meile L, Egger L, Badertscher R, Irmler S.

Front Microbiol. 2018 Apr 4;9:637. doi: 10.3389/fmicb.2018.00637. eCollection 2018.


Consumer Exposure to Antimicrobial Resistant Bacteria From Food at Swiss Retail Level.

Jans C, Sarno E, Collineau L, Meile L, Stärk KDC, Stephan R.

Front Microbiol. 2018 Mar 6;9:362. doi: 10.3389/fmicb.2018.00362. eCollection 2018.


A lab-scale model system for cocoa bean fermentation.

Romanens E, Näf R, Lobmaier T, Pedan V, Leischtfeld SF, Meile L, Schwenninger SM.

Appl Microbiol Biotechnol. 2018 Apr;102(7):3349-3362. doi: 10.1007/s00253-018-8835-6. Epub 2018 Feb 28.


Vagococcus teuberi sp. nov., isolated from the Malian artisanal sour milk fènè.

Wullschleger S, Jans C, Seifert C, Baumgartner S, Lacroix C, Bonfoh B, Stevens MJA, Meile L.

Syst Appl Microbiol. 2018 Mar;41(2):65-72. doi: 10.1016/j.syapm.2017.11.003. Epub 2017 Dec 21.


Investigating the association between African spontaneously fermented dairy products, faecal carriage of Streptococcus infantarius subsp. infantarius and colorectal adenocarcinoma in Kenya.

Kaindi DWM, Kogi-Makau W, Lule GN, Kreikemeyer B, Renault P, Bonfoh B, Schelling E, Zinsstag J, Lacroix C, Meile L, Jans C, Hattendorf J.

Acta Trop. 2018 Feb;178:10-18. doi: 10.1016/j.actatropica.2017.10.018. Epub 2017 Oct 25.


Complete Genome Sequences of Lactobacillus curvatus KG6, L. curvatus MRS6, and Lactobacillus sakei FAM18311, Isolated from Fermented Meat Products.

Jans C, Lagler S, Lacroix C, Meile L, Stevens MJA.

Genome Announc. 2017 Sep 21;5(38). pii: e00915-17. doi: 10.1128/genomeA.00915-17.


Amplicon Sequencing of the slpH Locus Permits Culture-Independent Strain Typing of Lactobacillus helveticus in Dairy Products.

Moser A, Wüthrich D, Bruggmann R, Eugster-Meier E, Meile L, Irmler S.

Front Microbiol. 2017 Jul 20;8:1380. doi: 10.3389/fmicb.2017.01380. eCollection 2017.


Enhancing oxidative stress resistance in Bifidobacterium thermophilum using a novel overexpression vector and transformation protocol.

Stevens MJA, Venturini A, Lacroix C, Meile L.

Plasmid. 2017 Jul;92:43-48. doi: 10.1016/j.plasmid.2017.06.002. Epub 2017 Jul 14.


The role of BRCA1-IRIS in the development and progression of triple negative breast cancers in Egypt: possible link to disease early lesion.

Bogan D, Meile L, El Bastawisy A, Yousef HF, Zekri AN, Bahnassy AA, ElShamy WM.

BMC Cancer. 2017 May 12;17(1):329. doi: 10.1186/s12885-017-3283-8.


Complete and Assembled Genome Sequence of Lactobacillus plantarum RI-113 Isolated from Salami.

Inglin RC, Meile L, Klumpp J, Stevens MJA.

Genome Announc. 2017 Apr 20;5(16). pii: e00183-17. doi: 10.1128/genomeA.00183-17.


East and West African milk products are reservoirs for human and livestock-associated Staphylococcus aureus.

Jans C, Merz A, Johler S, Younan M, Tanner SA, Kaindi DWM, Wangoh J, Bonfoh B, Meile L, Tasara T.

Food Microbiol. 2017 Aug;65:64-73. doi: 10.1016/ Epub 2017 Jan 31.


African fermented dairy products - Overview of predominant technologically important microorganisms focusing on African Streptococcus infantarius variants and potential future applications for enhanced food safety and security.

Jans C, Meile L, Kaindi DWM, Kogi-Makau W, Lamuka P, Renault P, Kreikemeyer B, Lacroix C, Hattendorf J, Zinsstag J, Schelling E, Fokou G, Bonfoh B.

Int J Food Microbiol. 2017 Jun 5;250:27-36. doi: 10.1016/j.ijfoodmicro.2017.03.012. Epub 2017 Mar 21. Review.


Complete and Assembled Genome Sequence of Vagococcus teuberi DSM 21459T, a Novel Species Isolated from Fermented Cow Milk in Mali.

Stevens MJ, Inglin RC, Meile L.

Genome Announc. 2017 Jan 26;5(4). pii: e01514-16. doi: 10.1128/genomeA.01514-16.


Innovations in food preservation in pastoral zones.

Jans C, Mulwa Kaindi DW, Meile L.

Rev Sci Tech. 2016 Nov;35(2):597-610. doi: 10.20506/rst.35.2.2527. Review.


Phylogenetic, epidemiological and functional analyses of the Streptococcus bovis/Streptococcus equinus complex through an overarching MLST scheme.

Jans C, de Wouters T, Bonfoh B, Lacroix C, Kaindi DW, Anderegg J, Böck D, Vitali S, Schmid T, Isenring J, Kurt F, Kogi-Makau W, Meile L.

BMC Microbiol. 2016 Jun 21;16(1):117. doi: 10.1186/s12866-016-0735-2.


Static compression regulates OPG expression in periodontal ligament cells via the CAMK II pathway.

Jianru YI, MeiLe LI, Yang Y, Zheng W, Yu LI, Zhao Z.

J Appl Oral Sci. 2015 Nov-Dec;23(6):549-54. doi: 10.1590/1678-775720150156.


Cysteine biosynthesis in Lactobacillus casei: identification and characterization of a serine acetyltransferase.

Bogicevic B, Berthoud H, Portmann R, Bavan T, Meile L, Irmler S.

FEMS Microbiol Lett. 2016 Feb;363(4). pii: fnw012. doi: 10.1093/femsle/fnw012. Epub 2016 Jan 19.


Influence of pH and the degree of protonation on the inhibitory effect of fatty acids in the ruminal methanogen Methanobrevibacter ruminantium strain M1.

Zhou X, Zeitz JO, Meile L, Kreuzer M, Schwarm A.

J Appl Microbiol. 2015 Dec;119(6):1482-93. doi: 10.1111/jam.12955. Epub 2015 Oct 27.


High-throughput screening assays for antibacterial and antifungal activities of Lactobacillus species.

Inglin RC, Stevens MJ, Meile L, Lacroix C, Meile L.

J Microbiol Methods. 2015 Jul;114:26-9. doi: 10.1016/j.mimet.2015.04.011. Epub 2015 Apr 30.


Genomics, evolution, and molecular epidemiology of the Streptococcus bovis/Streptococcus equinus complex (SBSEC).

Jans C, Meile L, Lacroix C, Stevens MJ.

Infect Genet Evol. 2015 Jul;33:419-36. doi: 10.1016/j.meegid.2014.09.017. Epub 2014 Sep 16. Review.


Phytic acid degrading lactic acid bacteria in tef-injera fermentation.

Fischer MM, Egli IM, Aeberli I, Hurrell RF, Meile L.

Int J Food Microbiol. 2014 Nov 3;190:54-60. doi: 10.1016/j.ijfoodmicro.2014.08.018. Epub 2014 Aug 20.


Antimicrobial susceptibility and antibiotic resistance gene transfer analysis of foodborne, clinical, and environmental Listeria spp. isolates including Listeria monocytogenes.

Bertsch D, Muelli M, Weller M, Uruty A, Lacroix C, Meile L.

Microbiologyopen. 2014 Feb;3(1):118-27. doi: 10.1002/mbo3.155. Epub 2014 Jan 2.


Prevalence and comparison of Streptococcus infantarius subsp. infantarius and Streptococcus gallolyticus subsp. macedonicus in raw and fermented dairy products from East and West Africa.

Jans C, Kaindi DW, Böck D, Njage PM, Kouamé-Sina SM, Bonfoh B, Lacroix C, Meile L.

Int J Food Microbiol. 2013 Oct 15;167(2):186-95. doi: 10.1016/j.ijfoodmicro.2013.09.008. Epub 2013 Sep 21.


pDB2011, a 7.6 kb multidrug resistance plasmid from Listeria innocua replicating in Gram-positive and Gram-negative hosts.

Bertsch D, Anderegg J, Lacroix C, Meile L, Stevens MJ.

Plasmid. 2013 Sep;70(2):284-7. doi: 10.1016/j.plasmid.2013.06.001. Epub 2013 Jun 14.


The effect of saturated fatty acids on methanogenesis and cell viability of Methanobrevibacter ruminantium.

Zhou X, Meile L, Kreuzer M, Zeitz JO.

Archaea. 2013;2013:106916. doi: 10.1155/2013/106916. Epub 2013 Apr 28.


Comparative genome analysis of Streptococcus infantarius subsp. infantarius CJ18, an African fermented camel milk isolate with adaptations to dairy environment.

Jans C, Follador R, Hochstrasser M, Lacroix C, Meile L, Stevens MJ.

BMC Genomics. 2013 Mar 22;14:200. doi: 10.1186/1471-2164-14-200.


Tn6198, a novel transposon containing the trimethoprim resistance gene dfrG embedded into a Tn916 element in Listeria monocytogenes.

Bertsch D, Uruty A, Anderegg J, Lacroix C, Perreten V, Meile L.

J Antimicrob Chemother. 2013 May;68(5):986-91. doi: 10.1093/jac/dks531. Epub 2013 Jan 22.


Prevalence of antibiotic resistance in coagulase-negative staphylococci from spontaneously fermented meat products and safety assessment for new starters.

Marty E, Bodenmann C, Buchs J, Hadorn R, Eugster-Meier E, Lacroix C, Meile L.

Int J Food Microbiol. 2012 Oct 1;159(2):74-83. doi: 10.1016/j.ijfoodmicro.2012.07.025. Epub 2012 Aug 2.


Effect of the rumen ciliates Entodinium caudatum, Epidinium ecaudatum and Eudiplodinium maggii, and combinations thereof, on ruminal fermentation and total tract digestion in sheep.

Zeitz JO, Amelchanka SL, Michałowski T, Wereszka K, Meile L, Hartnack S, Kreuzer M, Soliva CR.

Arch Anim Nutr. 2012 Jun;66(3):180-99.


Listeria fleischmannii sp. nov., isolated from cheese.

Bertsch D, Rau J, Eugster MR, Haug MC, Lawson PA, Lacroix C, Meile L.

Int J Syst Evol Microbiol. 2013 Feb;63(Pt 2):526-32. doi: 10.1099/ijs.0.036947-0. Epub 2012 Apr 20.


Novel Streptococcus infantarius subsp. infantarius variants harboring lactose metabolism genes homologous to Streptococcus thermophilus.

Jans C, Gerber A, Bugnard J, Njage PM, Lacroix C, Meile L.

Food Microbiol. 2012 Aug;31(1):33-42. doi: 10.1016/ Epub 2012 Feb 15.


Complete genome sequence of the African dairy isolate Streptococcus infantarius subsp. infantarius strain CJ18.

Jans C, Follador R, Lacroix C, Meile L, Stevens MJ.

J Bacteriol. 2012 Apr;194(8):2105-6. doi: 10.1128/JB.00160-12.


Identification of staphylococci and dominant lactic acid bacteria in spontaneously fermented Swiss meat products using PCR-RFLP.

Marty E, Buchs J, Eugster-Meier E, Lacroix C, Meile L.

Food Microbiol. 2012 Apr;29(2):157-66. doi: 10.1016/ Epub 2011 Sep 24.


CysK from Lactobacillus casei encodes a protein with O-acetylserine sulfhydrylase and cysteine desulfurization activity.

Bogicevic B, Berthoud H, Portmann R, Meile L, Irmler S.

Appl Microbiol Biotechnol. 2012 Jun;94(5):1209-20. doi: 10.1007/s00253-011-3677-5. Epub 2011 Nov 24.


A novel multiplex PCR/RFLP assay for the identification of Streptococcus bovis/Streptococcus equinus complex members from dairy microbial communities based on the 16S rRNA gene.

Jans C, Lacroix C, Meile L.

FEMS Microbiol Lett. 2012 Jan;326(2):144-50. doi: 10.1111/j.1574-6968.2011.02443.x. Epub 2011 Nov 18.


Risk factors for symptoms of gastrointestinal illness in rural town Isiolo, Kenya.

Kaindi DW, Schelling E, Wangoh JM, Imungi JK, Farah Z, Meile L.

Zoonoses Public Health. 2012 Mar;59(2):118-25. doi: 10.1111/j.1863-2378.2011.01425.x. Epub 2011 Jul 18.


1,3-Propanediol dehydrogenases in Lactobacillus reuteri: impact on central metabolism and 3-hydroxypropionaldehyde production.

Stevens MJ, Vollenweider S, Meile L, Lacroix C.

Microb Cell Fact. 2011 Aug 3;10:61. doi: 10.1186/1475-2859-10-61.


Effects of monolaurin on ruminal methanogens and selected bacterial species from cattle, as determined with the rumen simulation technique.

Klevenhusen F, Meile L, Kreuzer M, Soliva CR.

Anaerobe. 2011 Oct;17(5):232-8. doi: 10.1016/j.anaerobe.2011.07.003. Epub 2011 Jul 20.


Characterization of the cysK2-ctl1-cysE2 gene cluster involved in sulfur metabolism in Lactobacillus casei.

Bogicevic B, Irmler S, Portmann R, Meile L, Berthoud H.

Int J Food Microbiol. 2012 Jan 16;152(3):211-9. doi: 10.1016/j.ijfoodmicro.2011.06.015. Epub 2011 Jun 29.


Monitoring horizontal antibiotic resistance gene transfer in a colonic fermentation model.

Haug MC, Tanner SA, Lacroix C, Stevens MJ, Meile L.

FEMS Microbiol Ecol. 2011 Nov;78(2):210-9. doi: 10.1111/j.1574-6941.2011.01149.x. Epub 2011 Jul 11.


Suitability of different media for in vitro cultivation of the ruminal protozoa species Entodinium caudatum, Eudiplodinium maggii, and Epidinium ecaudatum.

Zeitz JO, Meile L, Michałowski T, Kreuzer M, Soliva CR.

Eur J Protistol. 2011 Nov;47(4):314-7. doi: 10.1016/j.ejop.2011.04.004. Epub 2011 Jun 8.


Construction and characterization of Enterococcus faecalis CG110/gfp/pRE25*, a tool for monitoring horizontal gene transfer in complex microbial ecosystems.

Haug MC, Tanner SA, Lacroix C, Meile L, Stevens MJ.

FEMS Microbiol Lett. 2010 Dec;313(2):111-9. doi: 10.1111/j.1574-6968.2010.02131.x. Epub 2010 Oct 28.


New method for selection of hydrogen peroxide adapted bifidobacteria cells using continuous culture and immobilized cell technology.

Mozzetti V, Grattepanche F, Moine D, Berger B, Rezzonico E, Meile L, Arigoni F, Lacroix C.

Microb Cell Fact. 2010 Jul 27;9:60. doi: 10.1186/1475-2859-9-60.

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