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Items: 1 to 50 of 60

1.

Reverse genetic screen reveals that Il34 facilitates yolk sac macrophage distribution and seeding of the brain.

Kuil LE, Oosterhof N, Geurts SN, van der Linde HC, Meijering E, van Ham TJ.

Dis Model Mech. 2019 Mar 8;12(3). pii: dmm037762. doi: 10.1242/dmm.037762.

2.

Bayesian Polytrees With Learned Deep Features for Multi-Class Cell Segmentation.

Fehri H, Gooya A, Lu Y, Meijering E, Johnston SA, Frangi AF.

IEEE Trans Image Process. 2019 Jul;28(7):3246-3260. doi: 10.1109/TIP.2019.2895455. Epub 2019 Jan 25.

3.

Automated Neuron Reconstruction from 3D Fluorescence Microscopy Images Using Sequential Monte Carlo Estimation.

Radojević M, Meijering E.

Neuroinformatics. 2019 Jul;17(3):423-442. doi: 10.1007/s12021-018-9407-8.

4.

Three-Dimensional Quantification of Filopodia in Motile Cancer Cells.

Castillam C, Maskam M, Sorokin DV, Meijering E, Ortiz-de-Solorzano C.

IEEE Trans Med Imaging. 2018 Oct 5. doi: 10.1109/TMI.2018.2873842. [Epub ahead of print]

PMID:
30296215
5.

Automated Neuron Detection in High-Content Fluorescence Microscopy Images Using Machine Learning.

Mata G, Radojević M, Fernandez-Lozano C, Smal I, Werij N, Morales M, Meijering E, Rubio J.

Neuroinformatics. 2019 Apr;17(2):253-269. doi: 10.1007/s12021-018-9399-4.

PMID:
30215167
6.

An objective comparison of cell-tracking algorithms.

Ulman V, Maška M, Magnusson KEG, Ronneberger O, Haubold C, Harder N, Matula P, Matula P, Svoboda D, Radojevic M, Smal I, Rohr K, Jaldén J, Blau HM, Dzyubachyk O, Lelieveldt B, Xiao P, Li Y, Cho SY, Dufour AC, Olivo-Marin JC, Reyes-Aldasoro CC, Solis-Lemus JA, Bensch R, Brox T, Stegmaier J, Mikut R, Wolf S, Hamprecht FA, Esteves T, Quelhas P, Demirel Ö, Malmström L, Jug F, Tomancak P, Meijering E, Muñoz-Barrutia A, Kozubek M, Ortiz-de-Solorzano C.

Nat Methods. 2017 Dec;14(12):1141-1152. doi: 10.1038/nmeth.4473. Epub 2017 Oct 30.

7.

EB1 and EB3 regulate microtubule minus end organization and Golgi morphology.

Yang C, Wu J, de Heus C, Grigoriev I, Liv N, Yao Y, Smal I, Meijering E, Klumperman J, Qi RZ, Akhmanova A.

J Cell Biol. 2017 Oct 2;216(10):3179-3198. doi: 10.1083/jcb.201701024. Epub 2017 Aug 16.

8.

Automatic tracing of ultra-volumes of neuronal images.

Peng H, Zhou Z, Meijering E, Zhao T, Ascoli GA, Hawrylycz M.

Nat Methods. 2017 Mar 31;14(4):332-333. doi: 10.1038/nmeth.4233. No abstract available.

PMID:
28362437
9.

Automated Analysis of Intracellular Dynamic Processes.

Yao Y, Smal I, Grigoriev I, Martin M, Akhmanova A, Meijering E.

Methods Mol Biol. 2017;1563:209-228. doi: 10.1007/978-1-4939-6810-7_14.

PMID:
28324611
10.

Automated neuron tracing using probability hypothesis density filtering.

Radojevic M, Meijering E.

Bioinformatics. 2017 Apr 1;33(7):1073-1080. doi: 10.1093/bioinformatics/btw751.

PMID:
28065895
11.

Imagining the future of bioimage analysis.

Meijering E, Carpenter AE, Peng H, Hamprecht FA, Olivo-Marin JC.

Nat Biotechnol. 2016 Dec 7;34(12):1250-1255. doi: 10.1038/nbt.3722. No abstract available.

PMID:
27926723
12.

Fuzzy-Logic Based Detection and Characterization of Junctions and Terminations in Fluorescence Microscopy Images of Neurons.

Radojević M, Smal I, Meijering E.

Neuroinformatics. 2016 Apr;14(2):201-19. doi: 10.1007/s12021-015-9287-0.

13.

Correction: Multiple Sparse Representations Classification.

Plenge E, Klein S, Niessen WJ, Meijering E.

PLoS One. 2015 Aug 24;10(8):e0136827. doi: 10.1371/journal.pone.0136827. eCollection 2015. No abstract available.

14.

BigNeuron: Large-Scale 3D Neuron Reconstruction from Optical Microscopy Images.

Peng H, Hawrylycz M, Roskams J, Hill S, Spruston N, Meijering E, Ascoli GA.

Neuron. 2015 Jul 15;87(2):252-6. doi: 10.1016/j.neuron.2015.06.036.

15.

Multiple Sparse Representations Classification.

Plenge E, Klein S, Niessen WJ, Meijering E.

PLoS One. 2015 Jul 15;10(7):e0131968. doi: 10.1371/journal.pone.0131968. eCollection 2015. Erratum in: PLoS One. 2015;10(8):e0136827. Klein, Stefan S [corrected to Klein, Stefan].

16.

Quantitative comparison of multiframe data association techniques for particle tracking in time-lapse fluorescence microscopy.

Smal I, Meijering E.

Med Image Anal. 2015 Aug;24(1):163-189. doi: 10.1016/j.media.2015.06.006. Epub 2015 Jun 27.

PMID:
26176413
17.

From DIADEM to BigNeuron.

Peng H, Meijering E, Ascoli GA.

Neuroinformatics. 2015 Jul;13(3):259-60. doi: 10.1007/s12021-015-9270-9. No abstract available.

18.

BRCA2 diffuses as oligomeric clusters with RAD51 and changes mobility after DNA damage in live cells.

Reuter M, Zelensky A, Smal I, Meijering E, van Cappellen WA, de Gruiter HM, van Belle GJ, van Royen ME, Houtsmuller AB, Essers J, Kanaar R, Wyman C.

J Cell Biol. 2015 Mar 16;208(6):857. doi: 10.1083/jcb.20140501402182015c. No abstract available.

19.

BRCA2 diffuses as oligomeric clusters with RAD51 and changes mobility after DNA damage in live cells.

Reuter M, Zelensky A, Smal I, Meijering E, van Cappellen WA, de Gruiter HM, van Belle GJ, van Royen ME, Houtsmuller AB, Essers J, Kanaar R, Wyman C.

J Cell Biol. 2014 Dec 8;207(5):599-613. doi: 10.1083/jcb.201405014. Erratum in: J Cell Biol. 2015 Mar 16;208(6):857.

20.

Quantitative imaging of focal adhesion dynamics and their regulation by HGF and Rap1 signaling.

Spanjaard E, Smal I, Angelopoulos N, Verlaan I, Matov A, Meijering E, Wessels L, Bos H, de Rooij J.

Exp Cell Res. 2015 Jan 15;330(2):382-97. doi: 10.1016/j.yexcr.2014.10.012. Epub 2014 Oct 31.

PMID:
25447308
21.

Comprehensive single cell-resolution analysis of the role of chromatin regulators in early C. elegans embryogenesis.

Krüger AV, Jelier R, Dzyubachyk O, Zimmerman T, Meijering E, Lehner B.

Dev Biol. 2015 Feb 15;398(2):153-62. doi: 10.1016/j.ydbio.2014.10.014. Epub 2014 Oct 28.

22.

Interactive local super-resolution reconstruction of whole-body MRI mouse data: a pilot study with applications to bone and kidney metastases.

Dzyubachyk O, Khmelinskii A, Plenge E, Kok P, Snoeks TJ, Poot DH, Löwik CW, Botha CP, Niessen WJ, van der Weerd L, Meijering E, Lelieveldt BP.

PLoS One. 2014 Sep 29;9(9):e108730. doi: 10.1371/journal.pone.0108730. eCollection 2014.

23.

Extracellular matrix defects in aneurysmal Fibulin-4 mice predispose to lung emphysema.

Ramnath NW, van de Luijtgaarden KM, van der Pluijm I, van Nimwegen M, van Heijningen PM, Swagemakers SM, van Thiel BS, Ridwan RY, van Vliet N, Vermeij M, Hawinkels LJ, de Munck A, Dzyubachyk O, Meijering E, van der Spek P, Rottier R, Yanagisawa H, Hendriks RW, Kanaar R, Rouwet EV, Kleinjan A, Essers J.

PLoS One. 2014 Sep 25;9(9):e106054. doi: 10.1371/journal.pone.0106054. eCollection 2014.

24.

Three-dimensional inversion recovery manganese-enhanced MRI of mouse brain using super-resolution reconstruction to visualize nuclei involved in higher brain function.

Poole DS, Plenge E, Poot DH, Lakke EA, Niessen WJ, Meijering E, van der Weerd L.

NMR Biomed. 2014 Jul;27(7):749-59. doi: 10.1002/nbm.3108. Epub 2014 May 10.

PMID:
24817644
25.

A benchmark for comparison of cell tracking algorithms.

Maška M, Ulman V, Svoboda D, Matula P, Matula P, Ederra C, Urbiola A, España T, Venkatesan S, Balak DM, Karas P, Bolcková T, Streitová M, Carthel C, Coraluppi S, Harder N, Rohr K, Magnusson KE, Jaldén J, Blau HM, Dzyubachyk O, Křížek P, Hagen GM, Pastor-Escuredo D, Jimenez-Carretero D, Ledesma-Carbayo MJ, Muñoz-Barrutia A, Meijering E, Kozubek M, Ortiz-de-Solorzano C.

Bioinformatics. 2014 Jun 1;30(11):1609-17. doi: 10.1093/bioinformatics/btu080. Epub 2014 Feb 12.

26.

Super-resolution reconstruction using cross-scale self-similarity in multi-slice MRI.

Plenge E, Poot DH, Niessen WJ, Meijering E.

Med Image Comput Comput Assist Interv. 2013;16(Pt 3):123-30.

PMID:
24505752
27.

Objective comparison of particle tracking methods.

Chenouard N, Smal I, de Chaumont F, Maška M, Sbalzarini IF, Gong Y, Cardinale J, Carthel C, Coraluppi S, Winter M, Cohen AR, Godinez WJ, Rohr K, Kalaidzidis Y, Liang L, Duncan J, Shen H, Xu Y, Magnusson KE, Jaldén J, Blau HM, Paul-Gilloteaux P, Roudot P, Kervrann C, Waharte F, Tinevez JY, Shorte SL, Willemse J, Celler K, van Wezel GP, Dan HW, Tsai YS, Ortiz de Solórzano C, Olivo-Marin JC, Meijering E.

Nat Methods. 2014 Mar;11(3):281-9. doi: 10.1038/nmeth.2808. Epub 2014 Jan 19.

28.

End-binding proteins sensitize microtubules to the action of microtubule-targeting agents.

Mohan R, Katrukha EA, Doodhi H, Smal I, Meijering E, Kapitein LC, Steinmetz MO, Akhmanova A.

Proc Natl Acad Sci U S A. 2013 May 28;110(22):8900-5. doi: 10.1073/pnas.1300395110. Epub 2013 May 14.

29.

Super-resolution methods in MRI: can they improve the trade-off between resolution, signal-to-noise ratio, and acquisition time?

Plenge E, Poot DH, Bernsen M, Kotek G, Houston G, Wielopolski P, van der Weerd L, Niessen WJ, Meijering E.

Magn Reson Med. 2012 Dec;68(6):1983-93. doi: 10.1002/mrm.24187. Epub 2012 Feb 1.

30.

Methods for cell and particle tracking.

Meijering E, Dzyubachyk O, Smal I.

Methods Enzymol. 2012;504:183-200. doi: 10.1016/B978-0-12-391857-4.00009-4. Review.

PMID:
22264535
31.

Trans-dimensional MCMC methods for fully automatic motion analysis in tagged MRI.

Smal I, Carranza-Herrezuelo N, Klein S, Niessen W, Meijering E.

Med Image Comput Comput Assist Interv. 2011;14(Pt 1):573-80.

PMID:
22003664
32.

Reversible jump MCMC methods for fully automatic motion analysis in tagged MRI.

Smal I, Carranza-Herrezuelo N, Klein S, Wielopolski P, Moelker A, Springeling T, Bernsen M, Niessen W, Meijering E.

Med Image Anal. 2012 Jan;16(1):301-24. doi: 10.1016/j.media.2011.08.006. Epub 2011 Sep 8.

PMID:
21963294
33.

Insights into EB1 structure and the role of its C-terminal domain for discriminating microtubule tips from the lattice.

Buey RM, Mohan R, Leslie K, Walzthoeni T, Missimer JH, Menzel A, Bjelic S, Bargsten K, Grigoriev I, Smal I, Meijering E, Aebersold R, Akhmanova A, Steinmetz MO.

Mol Biol Cell. 2011 Aug 15;22(16):2912-23. doi: 10.1091/mbc.E11-01-0017. Epub 2011 Jul 7.

34.

Rab6, Rab8, and MICAL3 cooperate in controlling docking and fusion of exocytotic carriers.

Grigoriev I, Yu KL, Martinez-Sanchez E, Serra-Marques A, Smal I, Meijering E, Demmers J, Peränen J, Pasterkamp RJ, van der Sluijs P, Hoogenraad CC, Akhmanova A.

Curr Biol. 2011 Jun 7;21(11):967-74. doi: 10.1016/j.cub.2011.04.030. Epub 2011 May 19.

35.

ATP-dependent and independent functions of Rad54 in genome maintenance.

Agarwal S, van Cappellen WA, Guénolé A, Eppink B, Linsen SE, Meijering E, Houtsmuller A, Kanaar R, Essers J.

J Cell Biol. 2011 Mar 7;192(5):735-50. doi: 10.1083/jcb.201011025. Epub 2011 Feb 28.

36.

In vitro reconstitution of the functional interplay between MCAK and EB3 at microtubule plus ends.

Montenegro Gouveia S, Leslie K, Kapitein LC, Buey RM, Grigoriev I, Wagenbach M, Smal I, Meijering E, Hoogenraad CC, Wordeman L, Steinmetz MO, Akhmanova A.

Curr Biol. 2010 Oct 12;20(19):1717-22. doi: 10.1016/j.cub.2010.08.020. Epub 2010 Sep 16.

37.

Automated analysis of time-lapse fluorescence microscopy images: from live cell images to intracellular foci.

Dzyubachyk O, Essers J, van Cappellen WA, Baldeyron C, Inagaki A, Niessen WJ, Meijering E.

Bioinformatics. 2010 Oct 1;26(19):2424-30. doi: 10.1093/bioinformatics/btq434. Epub 2010 Aug 11.

PMID:
20702399
38.

Neuron tracing in perspective.

Meijering E.

Cytometry A. 2010 Jul;77(7):693-704. doi: 10.1002/cyto.a.20895. Review.

39.

History-dependent catastrophes regulate axonal microtubule behavior.

Stepanova T, Smal I, van Haren J, Akinci U, Liu Z, Miedema M, Limpens R, van Ham M, van der Reijden M, Poot R, Grosveld F, Mommaas M, Meijering E, Galjart N.

Curr Biol. 2010 Jun 8;20(11):1023-8. doi: 10.1016/j.cub.2010.04.024. Epub 2010 May 13.

40.

Microtubule dynamics analysis using kymographs and variable-rate particle filters.

Smal I, Grigoriev I, Akhmanova A, Niessen WJ, Meijering E.

IEEE Trans Image Process. 2010 Jul;19(7):1861-76. doi: 10.1109/TIP.2010.2045031. Epub 2010 Mar 11.

PMID:
20227980
41.

Advanced level-set-based cell tracking in time-lapse fluorescence microscopy.

Dzyubachyk O, van Cappellen WA, Essers J, Niessen WJ, Meijering E.

IEEE Trans Med Imaging. 2010 Mar;29(3):852-67. doi: 10.1109/TMI.2009.2038693. Erratum in: IEEE Trans Med Imaging. 2010 Jun;29(6):1331.

PMID:
20199920
42.

Model-based approach for tracking embryogenesis in Caenorhabditis elegans fluorescence microscopy data.

Dzyubachyk O, Jelier R, Lehner B, Niessen W, Meijering E.

Conf Proc IEEE Eng Med Biol Soc. 2009;2009:5356-9. doi: 10.1109/IEMBS.2009.5334046.

PMID:
19964674
43.

Accurate estimation of microtubule dynamics using kymographs and variable-rate particle filters.

Smal I, Grigoriev I, Akhmanova A, Niessen WJ, Meijering E.

Conf Proc IEEE Eng Med Biol Soc. 2009;2009:1012-5. doi: 10.1109/IEMBS.2009.5333350.

PMID:
19963986
44.

Tracking in cell and developmental biology.

Meijering E, Dzyubachyk O, Smal I, van Cappellen WA.

Semin Cell Dev Biol. 2009 Oct;20(8):894-902. doi: 10.1016/j.semcdb.2009.07.004. Epub 2009 Aug 4. Review.

PMID:
19660567
45.

Quantitative comparison of spot detection methods in fluorescence microscopy.

Smal I, Loog M, Niessen W, Meijering E.

IEEE Trans Med Imaging. 2010 Feb;29(2):282-301. doi: 10.1109/TMI.2009.2025127. Epub 2009 Jun 23.

PMID:
19556194
46.

Intracranial internal carotid artery calcifications: association with vascular risk factors and ischemic cerebrovascular disease.

de Weert TT, Cakir H, Rozie S, Cretier S, Meijering E, Dippel DW, van der Lugt A.

AJNR Am J Neuroradiol. 2009 Jan;30(1):177-84. doi: 10.3174/ajnr.A1301. Epub 2008 Oct 8.

47.

Particle filtering for multiple object tracking in dynamic fluorescence microscopy images: application to microtubule growth analysis.

Smal I, Draegestein K, Galjart N, Niessen W, Meijering E.

IEEE Trans Med Imaging. 2008 Jun;27(6):789-804. doi: 10.1109/TMI.2008.916964.

PMID:
18541486
48.

Multiple object tracking in molecular bioimaging by Rao-Blackwellized marginal particle filtering.

Smal I, Meijering E, Draegestein K, Galjart N, Grigoriev I, Akhmanova A, van Royen ME, Houtsmuller AB, Niessen W.

Med Image Anal. 2008 Dec;12(6):764-77. doi: 10.1016/j.media.2008.03.004. Epub 2008 Mar 31.

PMID:
18457985
49.

Assessment of atherosclerotic carotid plaque volume with multidetector computed tomography angiography.

de Weert TT, de Monyé C, Meijering E, Booij R, Niessen WJ, Dippel DW, van der Lugt A.

Int J Cardiovasc Imaging. 2008 Oct;24(7):751-9. doi: 10.1007/s10554-008-9309-1. Epub 2008 Mar 29.

50.

Image reconstruction by convolution with symmetrical piecewise nth-order polynomial kernels.

Meijering EW, Zuiderveld KJ, Viergever MA.

IEEE Trans Image Process. 1999;8(2):192-201. doi: 10.1109/83.743854.

PMID:
18267467

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