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Items: 1 to 50 of 153

1.

Coding RNA Sequencing of Equine Endometrium during Maternal Recognition of Pregnancy.

Klohonatz KM, Coleman SJ, Islas-Trejo AD, Medrano JF, Hess AM, Kalbfleisch T, Thomas MG, Bouma GJ, Bruemmer JE.

Genes (Basel). 2019 Sep 25;10(10). pii: E749. doi: 10.3390/genes10100749.

2.

Genetic mechanisms regulating the host response during mastitis.

Asselstine V, Miglior F, Suárez-Vega A, Fonseca PAS, Mallard B, Karrow N, Islas-Trejo A, Medrano JF, Cánovas A.

J Dairy Sci. 2019 Oct;102(10):9043-9059. doi: 10.3168/jds.2019-16504. Epub 2019 Aug 14.

PMID:
31421890
3.

Implementation of Bayesian methods to identify SNP and haplotype regions with transmission ratio distortion across the whole genome: TRDscan v.1.0.

Id-Lahoucine S, Cánovas A, Jaton C, Miglior F, Fonseca PAS, Sargolzaei M, Miller S, Schenkel FS, Medrano JF, Casellas J.

J Dairy Sci. 2019 Apr;102(4):3175-3188. doi: 10.3168/jds.2018-15296. Epub 2019 Feb 7.

PMID:
30738671
4.

In vitro breeding: application of embryonic stem cells to animal production†.

Goszczynski DE, Cheng H, Demyda-Peyrás S, Medrano JF, Wu J, Ross PJ.

Biol Reprod. 2019 Apr 1;100(4):885-895. doi: 10.1093/biolre/ioy256.

PMID:
30551176
5.

Combining multi-OMICs information to identify key-regulator genes for pleiotropic effect on fertility and production traits in beef cattle.

Fonseca PAS, Id-Lahoucine S, Reverter A, Medrano JF, Fortes MS, Casellas J, Miglior F, Brito L, Carvalho MRS, Schenkel FS, Nguyen LT, Porto-Neto LR, Thomas MG, Cánovas A.

PLoS One. 2018 Oct 18;13(10):e0205295. doi: 10.1371/journal.pone.0205295. eCollection 2018.

6.

Genome-wide identification of tissue-specific long non-coding RNA in three farm animal species.

Kern C, Wang Y, Chitwood J, Korf I, Delany M, Cheng H, Medrano JF, Van Eenennaam AL, Ernst C, Ross P, Zhou H.

BMC Genomics. 2018 Sep 18;19(1):684. doi: 10.1186/s12864-018-5037-7.

7.

Pre- and post-puberty expression of genes and proteins in the uterus of Bos indicus heifers: the luteal phase effect post-puberty.

Fortes MRS, Zacchi LF, Nguyen LT, Raidan F, Weller MMDCA, Choo JJY, Reverter A, Rego JPA, Boe-Hansen GB, Porto-Neto LR, Lehnert SA, Cánovas A, Schulz BL, Islas-Trejo A, Medrano JF, Thomas MG, Moore SS.

Anim Genet. 2018 Dec;49(6):539-549. doi: 10.1111/age.12721. Epub 2018 Sep 7.

PMID:
30192028
8.

Transcriptome profiles of isolated murine Achilles tendon proper- and peritenon-derived progenitor cells.

Mienaltowski MJ, Cánovas A, Fates VA, Hampton AR, Pechanec MY, Islas-Trejo A, Medrano JF.

J Orthop Res. 2019 Jun;37(6):1409-1418. doi: 10.1002/jor.24076. Epub 2018 Jul 13.

PMID:
29926971
9.

Polymorphisms within the prolactin and growth hormone/insulin-like growth factor-1 functional pathways associated with fertility traits in Holstein cows raised in a hot-humid climate.

Leyva-Corona JC, Reyna-Granados JR, Zamorano-Algandar R, Sanchez-Castro MA, Thomas MG, Enns RM, Speidel SE, Medrano JF, Rincon G, Luna-Nevarez P.

Trop Anim Health Prod. 2018 Dec;50(8):1913-1920. doi: 10.1007/s11250-018-1645-0. Epub 2018 Jun 20.

PMID:
29926362
10.

STAT6, PBX2, and PBRM1 Emerge as Predicted Regulators of 452 Differentially Expressed Genes Associated With Puberty in Brahman Heifers.

Nguyen LT, Reverter A, Cánovas A, Venus B, Anderson ST, Islas-Trejo A, Dias MM, Crawford NF, Lehnert SA, Medrano JF, Thomas MG, Moore SS, Fortes MRS.

Front Genet. 2018 Mar 20;9:87. doi: 10.3389/fgene.2018.00087. eCollection 2018.

11.

Neuropeptidome of the Hypothalamus and Pituitary Gland of Indicine × Taurine Heifers: Evidence of Differential Neuropeptide Processing in the Pituitary Gland before and after Puberty.

DeAtley KL, Colgrave ML, Cánovas A, Wijffels G, Ashley RL, Silver GA, Rincon G, Medrano JF, Islas-Trejo A, Fortes MRS, Reverter A, Porto-Neto L, Lehnert SA, Thomas MG.

J Proteome Res. 2018 May 4;17(5):1852-1865. doi: 10.1021/acs.jproteome.7b00875. Epub 2018 Apr 6.

PMID:
29510626
12.

Individual signatures and environmental factors shape skin microbiota in healthy dogs.

Cuscó A, Belanger JM, Gershony L, Islas-Trejo A, Levy K, Medrano JF, Sánchez A, Oberbauer AM, Francino O.

Microbiome. 2017 Oct 13;5(1):139. doi: 10.1186/s40168-017-0355-6.

13.

Global differential gene expression in the pituitary gland and the ovaries of pre- and postpubertal Brahman heifers.

Nguyen LT, Reverter A, Cánovas A, Venus B, Islas-Trejo A, Porto-Neto LR, Lehnert SA, Medrano JF, Moore SS, Fortes MR.

J Anim Sci. 2017 Feb;95(2):599-615. doi: 10.2527/jas.2016.0921.

PMID:
28380590
14.

SNP detection using RNA-sequences of candidate genes associated with puberty in cattle.

Dias MM, Cánovas A, Mantilla-Rojas C, Riley DG, Luna-Nevarez P, Coleman SJ, Speidel SE, Enns RM, Islas-Trejo A, Medrano JF, Moore SS, Fortes MR, Nguyen LT, Venus B, Diaz IS, Souza FR, Fonseca LF, Baldi F, Albuquerque LG, Thomas MG, Oliveira HN.

Genet Mol Res. 2017 Mar 22;16(1). doi: 10.4238/gmr16019522.

PMID:
28340271
15.

The evolution of the natural killer complex; a comparison between mammals using new high-quality genome assemblies and targeted annotation.

Schwartz JC, Gibson MS, Heimeier D, Koren S, Phillippy AM, Bickhart DM, Smith TP, Medrano JF, Hammond JA.

Immunogenetics. 2017 Apr;69(4):255-269. doi: 10.1007/s00251-017-0973-y. Epub 2017 Feb 9.

16.

Genetic Dissection of a QTL Affecting Bone Geometry.

Sabik OL, Medrano JF, Farber CR.

G3 (Bethesda). 2017 Mar 10;7(3):865-870. doi: 10.1534/g3.116.037424.

17.

Genome Report: Identification and Validation of Antigenic Proteins from Pajaroellobacter abortibovis Using De Novo Genome Sequence Assembly and Reverse Vaccinology.

Welly BT, Miller MR, Stott JL, Blanchard MT, Islas-Trejo AD, O'Rourke SM, Young AE, Medrano JF, Van Eenennaam AL.

G3 (Bethesda). 2017 Feb 9;7(2):321-331. doi: 10.1534/g3.116.036673.

18.

Developmental Stage, Muscle and Genetic Type Modify Muscle Transcriptome in Pigs: Effects on Gene Expression and Regulatory Factors Involved in Growth and Metabolism.

Ayuso M, Fernández A, Núñez Y, Benítez R, Isabel B, Fernández AI, Rey AI, González-Bulnes A, Medrano JF, Cánovas Á, López-Bote CJ, Óvilo C.

PLoS One. 2016 Dec 9;11(12):e0167858. doi: 10.1371/journal.pone.0167858. eCollection 2016.

19.

Transcriptome analyses identify five transcription factors differentially expressed in the hypothalamus of post- versus prepubertal Brahman heifers.

Fortes MR, Nguyen LT, Weller MM, Cánovas A, Islas-Trejo A, Porto-Neto LR, Reverter A, Lehnert SA, Boe-Hansen GB, Thomas MG, Medrano JF, Moore SS.

J Anim Sci. 2016 Sep;94(9):3693-3702. doi: 10.2527/jas.2016-0471.

PMID:
27898892
20.

Wilson Disease: Epigenetic effects of choline supplementation on phenotype and clinical course in a mouse model.

Medici V, Kieffer DA, Shibata NM, Chima H, Kim K, Canovas A, Medrano JF, Islas-Trejo AD, Kharbanda KK, Olson K, Su RJ, Islam MS, Syed R, Keen CL, Miller AY, Rutledge JC, Halsted CH, LaSalle JM.

Epigenetics. 2016 Nov;11(11):804-818. Epub 2016 Sep 9.

21.

Metabolic Reprogramming Regulates the Proliferative and Inflammatory Phenotype of Adventitial Fibroblasts in Pulmonary Hypertension Through the Transcriptional Corepressor C-Terminal Binding Protein-1.

Li M, Riddle S, Zhang H, D'Alessandro A, Flockton A, Serkova NJ, Hansen KC, Moldovan R, McKeon BA, Frid M, Kumar S, Li H, Liu H, Caánovas A, Medrano JF, Thomas MG, Iloska D, Plecitá-Hlavatá L, Ježek P, Pullamsetti S, Fini MA, El Kasmi KC, Zhang Q, Stenmark KR.

Circulation. 2016 Oct 11;134(15):1105-1121. Epub 2016 Aug 25. Erratum in: Circulation. 2019 Jan 8;139(2):e1. Moldvan, Radu [corrected to Moldovan, Radu].

22.

Omega-3 fatty acids partially revert the metabolic gene expression profile induced by long-term calorie restriction.

López-Domínguez JA, Cánovas Á, Medrano JF, Islas-Trejo A, Kim K, Taylor SL, Villalba JM, López-Lluch G, Navas P, Ramsey JJ.

Exp Gerontol. 2016 May;77:29-37. doi: 10.1016/j.exger.2016.02.002. Epub 2016 Feb 11.

PMID:
26875793
23.

Parallel responses of human epidermal keratinocytes to inorganic SbIII and AsIII.

Phillips MA, Cánovas A, Wu PW, Islas-Trejo A, Medrano JF, Rice RH.

Environ Chem. 2016;13(6):963-970. doi: 10.1071/EN16019. Epub 2016 Apr 26.

24.

What's in your next-generation sequence data? An exploration of unmapped DNA and RNA sequence reads from the bovine reference individual.

Whitacre LK, Tizioto PC, Kim J, Sonstegard TS, Schroeder SG, Alexander LJ, Medrano JF, Schnabel RD, Taylor JF, Decker JE.

BMC Genomics. 2015 Dec 29;16:1114. doi: 10.1186/s12864-015-2313-7.

25.

Comparative Analysis of Muscle Transcriptome between Pig Genotypes Identifies Genes and Regulatory Mechanisms Associated to Growth, Fatness and Metabolism.

Ayuso M, Fernández A, Núñez Y, Benítez R, Isabel B, Barragán C, Fernández AI, Rey AI, Medrano JF, Cánovas Á, González-Bulnes A, López-Bote C, Ovilo C.

PLoS One. 2015 Dec 22;10(12):e0145162. doi: 10.1371/journal.pone.0145162. eCollection 2015.

26.

A clone-free, single molecule map of the domestic cow (Bos taurus) genome.

Zhou S, Goldstein S, Place M, Bechner M, Patino D, Potamousis K, Ravindran P, Pape L, Rincon G, Hernandez-Ortiz J, Medrano JF, Schwartz DC.

BMC Genomics. 2015 Aug 28;16:644. doi: 10.1186/s12864-015-1823-7.

27.

Wolf Subspecies: Reply to Weckworth et al. and Fredrickson et al.

Cronin MA, Cánovas A, Bannasch DL, Oberbauer AM, Medrano JF.

J Hered. 2015 Jul-Aug;106(4):417-9. doi: 10.1093/jhered/esv029. Epub 2015 May 11. No abstract available.

PMID:
25964446
28.

Peptidomic analysis of healthy and subclinically mastitic bovine milk.

Guerrero A, Dallas DC, Contreras S, Bhandari A, Cánovas A, Islas-Trejo A, Medrano JF, Parker EA, Wang M, Hettinga K, Chee S, German JB, Barile D, Lebrilla CB.

Int Dairy J. 2015 Jul 1;46:46-52.

29.

RNA sequencing to study gene expression and SNP variations associated with growth in zebrafish fed a plant protein-based diet.

Ulloa PE, Rincón G, Islas-Trejo A, Araneda C, Iturra P, Neira R, Medrano JF.

Mar Biotechnol (NY). 2015 Jun;17(3):353-63. doi: 10.1007/s10126-015-9624-1. Epub 2015 Feb 22.

PMID:
25702041
30.

Overlapping mouse subcongenic strains successfully separate two linked body fat QTL on distal MMU 2.

Gularte-Mérida R, Farber CR, Verdugo RA, Islas-Trejo A, Famula TR, Warden CH, Medrano JF.

BMC Genomics. 2015 Jan 23;16:16. doi: 10.1186/s12864-014-1191-8.

31.

Bayesian analysis of additive epistasis arising from new mutations in mice.

Casellas J, Gianola D, Medrano JF.

Genet Res (Camb). 2014 Aug 13;96:e008. doi: 10.1017/S001667231400010X.

PMID:
25578900
32.

Single nucleotide polymorphism (SNP) variation of wolves (Canis lupus) in Southeast Alaska and comparison with wolves, dogs, and coyotes in North America.

Cronin MA, Cánovas A, Bannasch DL, Oberbauer AM, Medrano JF.

J Hered. 2015 Jan-Feb;106(1):26-36. doi: 10.1093/jhered/esu075. Epub 2014 Nov 26.

PMID:
25429025
33.

High-resolution mapping of a genetic locus regulating preferential carbohydrate intake, total kilocalories, and food volume on mouse chromosome 17.

Gularte-Mérida R, DiCarlo LM, Robertson G, Simon J, Johnson WD, Kappen C, Medrano JF, Richards BK.

PLoS One. 2014 Oct 20;9(10):e110424. doi: 10.1371/journal.pone.0110424. eCollection 2014.

34.

Zebrafish as animal model for aquaculture nutrition research.

Ulloa PE, Medrano JF, Feijoo CG.

Front Genet. 2014 Sep 10;5:313. doi: 10.3389/fgene.2014.00313. eCollection 2014.

35.

Genomic variation and population structure detected by single nucleotide polymorphism arrays in Corriedale, Merino and Creole sheep.

Grasso AN, Goldberg V, Navajas EA, Iriarte W, Gimeno D, Aguilar I, Medrano JF, Rincón G, Ciappesoni G.

Genet Mol Biol. 2014 Jun;37(2):389-95.

36.

Multi-tissue omics analyses reveal molecular regulatory networks for puberty in composite beef cattle.

Cánovas A, Reverter A, DeAtley KL, Ashley RL, Colgrave ML, Fortes MR, Islas-Trejo A, Lehnert S, Porto-Neto L, Rincón G, Silver GA, Snelling WM, Medrano JF, Thomas MG.

PLoS One. 2014 Jul 21;9(7):e102551. doi: 10.1371/journal.pone.0102551. eCollection 2014.

37.

Comparison of five different RNA sources to examine the lactating bovine mammary gland transcriptome using RNA-Sequencing.

Cánovas A, Rincón G, Bevilacqua C, Islas-Trejo A, Brenaut P, Hovey RC, Boutinaud M, Morgenthaler C, VanKlompenberg MK, Martin P, Medrano JF.

Sci Rep. 2014 Jul 8;4:5297. doi: 10.1038/srep05297.

38.

Predicting the important enzymes in human breast milk digestion.

Khaldi N, Vijayakumar V, Dallas DC, Guerrero A, Wickramasinghe S, Smilowitz JT, Medrano JF, Lebrilla CB, Shields DC, German JB.

J Agric Food Chem. 2014 Jul 23;62(29):7225-32. doi: 10.1021/jf405601e. Epub 2014 Jul 10.

39.

Molecular phylogeny and SNP variation of polar bears (Ursus maritimus), brown bears (U. arctos), and black bears (U. americanus) derived from genome sequences.

Cronin MA, Rincon G, Meredith RW, MacNeil MD, Islas-Trejo A, Cánovas A, Medrano JF.

J Hered. 2014 May-Jun;105(3):312-23. doi: 10.1093/jhered/est133. Epub 2014 Jan 29.

PMID:
24477675
40.

Bovine and murine tissue expression of insulin like growth factor-I.

Oberbauer AM, Belanger JM, Rincon G, Cánovas A, Islas-Trejo A, Gularte-Mérida R, Thomas MG, Medrano JF.

Gene. 2014 Feb 10;535(2):101-5. doi: 10.1016/j.gene.2013.11.089. Epub 2013 Dec 12.

PMID:
24333269
41.

Sequencing the transcriptome of milk production: milk trumps mammary tissue.

Lemay DG, Hovey RC, Hartono SR, Hinde K, Smilowitz JT, Ventimiglia F, Schmidt KA, Lee JW, Islas-Trejo A, Silva PI, Korf I, Medrano JF, Barry PA, German JB.

BMC Genomics. 2013 Dec 12;14:872. doi: 10.1186/1471-2164-14-872.

42.

RNA-seq analysis of single bovine blastocysts.

Chitwood JL, Rincon G, Kaiser GG, Medrano JF, Ross PJ.

BMC Genomics. 2013 May 25;14:350. doi: 10.1186/1471-2164-14-350.

43.

Single nucleotide polymorphisms in CETP, SLC46A1, SLC19A1, CD36, BCMO1, APOA5, and ABCA1 are significant predictors of plasma HDL in healthy adults.

Clifford AJ, Rincon G, Owens JE, Medrano JF, Moshfegh AJ, Baer DJ, Novotny JA.

Lipids Health Dis. 2013 May 8;12:66. doi: 10.1186/1476-511X-12-66.

44.

Growth response and expression of muscle growth-related candidate genes in adult zebrafish fed plant and fishmeal protein-based diets.

Ulloa PE, Peña AA, Lizama CD, Araneda C, Iturra P, Neira R, Medrano JF.

Zebrafish. 2013 Mar;10(1):99-109. doi: 10.1089/zeb.2012.0823.

PMID:
23590402
45.

RNA sequencing to study gene expression and single nucleotide polymorphism variation associated with citrate content in cow milk.

Cánovas A, Rincón G, Islas-Trejo A, Jimenez-Flores R, Laubscher A, Medrano JF.

J Dairy Sci. 2013 Apr;96(4):2637-2648. doi: 10.3168/jds.2012-6213. Epub 2013 Feb 10.

46.

Leptin receptor interacts with rat chromosome 1 to regulate renal disease traits.

Warden CH, Gularte-Mérida R, Fisler JS, Hansen S, Shibata N, Le A, Medrano JF, Stern JS.

Physiol Genomics. 2012 Nov 1;44(21):1052-62. doi: 10.1152/physiolgenomics.00134.2011. Epub 2012 Sep 11.

47.

Gender and single nucleotide polymorphisms in MTHFR, BHMT, SPTLC1, CRBP2, CETP, and SCARB1 are significant predictors of plasma homocysteine normalized by RBC folate in healthy adults.

Clifford AJ, Chen K, McWade L, Rincon G, Kim SH, Holstege DM, Owens JE, Liu B, Müller HG, Medrano JF, Fadel JG, Moshfegh AJ, Baer DJ, Novotny JA.

J Nutr. 2012 Sep;142(9):1764-71. doi: 10.3945/jn.112.160333. Epub 2012 Jul 25. Erratum in: J Nutr. 2013 Jun;143(6):934.

48.

Gene network analyses of first service conception in Brangus heifers: use of genome and trait associations, hypothalamic-transcriptome information, and transcription factors.

Fortes MR, Snelling WM, Reverter A, Nagaraj SH, Lehnert SA, Hawken RJ, DeAtley KL, Peters SO, Silver GA, Rincon G, Medrano JF, Islas-Trejo A, Thomas MG.

J Anim Sci. 2012 Sep;90(9):2894-906. doi: 10.2527/jas.2011-4601. Epub 2012 Jun 27.

PMID:
22739780
49.

Genetic variants in a lipid regulatory pathway as potential tools for improving the nutritional quality of grass-fed beef.

Baeza MC, Corva PM, Soria LA, Pavan E, Rincon G, Medrano JF.

Anim Genet. 2013 Apr;44(2):121-9. doi: 10.1111/j.1365-2052.2012.02386.x. Epub 2012 Jun 13.

PMID:
22690737
50.

Genome scans for transmission ratio distortion regions in mice.

Casellas J, Gularte RJ, Farber CR, Varona L, Mehrabian M, Schadt EE, Lusis AJ, Attie AD, Yandell BS, Medrano JF.

Genetics. 2012 May;191(1):247-59. doi: 10.1534/genetics.111.135988. Epub 2012 Feb 23.

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