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Items: 16

1.

The European Society of Paediatric Oncology Ependymoma-II program Core-Plus model: Development and initial implementation of a cognitive test protocol for an international brain tumour trial.

Thomas S, Reynolds D, Morrall MCHJ, Limond J, Chevignard M, Calaminus G, Poggi G, Bennett E, Frappaz D, Slade D, Gautier J, McQuilton P, Massimino M, Grundy R.

Eur J Paediatr Neurol. 2019 Jul;23(4):560-570. doi: 10.1016/j.ejpn.2019.05.009. Epub 2019 May 18.

PMID:
31182404
2.

FAIRsharing as a community approach to standards, repositories and policies.

Sansone SA, McQuilton P, Rocca-Serra P, Gonzalez-Beltran A, Izzo M, Lister AL, Thurston M; FAIRsharing Community.

Nat Biotechnol. 2019 Apr;37(4):358-367. doi: 10.1038/s41587-019-0080-8. No abstract available.

PMID:
30940948
3.

Overview of the interactive task in BioCreative V.

Wang Q, S Abdul S, Almeida L, Ananiadou S, Balderas-Martínez YI, Batista-Navarro R, Campos D, Chilton L, Chou HJ, Contreras G, Cooper L, Dai HJ, Ferrell B, Fluck J, Gama-Castro S, George N, Gkoutos G, Irin AK, Jensen LJ, Jimenez S, Jue TR, Keseler I, Madan S, Matos S, McQuilton P, Milacic M, Mort M, Natarajan J, Pafilis E, Pereira E, Rao S, Rinaldi F, Rothfels K, Salgado D, Silva RM, Singh O, Stefancsik R, Su CH, Subramani S, Tadepally HD, Tsaprouni L, Vasilevsky N, Wang X, Chatr-Aryamontri A, Laulederkind SJ, Matis-Mitchell S, McEntyre J, Orchard S, Pundir S, Rodriguez-Esteban R, Van Auken K, Lu Z, Schaeffer M, Wu CH, Hirschman L, Arighi CN.

Database (Oxford). 2016 Sep 1;2016. pii: baw119. doi: 10.1093/database/baw119. Print 2016.

4.

BioSharing: curated and crowd-sourced metadata standards, databases and data policies in the life sciences.

McQuilton P, Gonzalez-Beltran A, Rocca-Serra P, Thurston M, Lister A, Maguire E, Sansone SA.

Database (Oxford). 2016 May 17;2016. pii: baw075. doi: 10.1093/database/baw075. Print 2016.

5.

Overview of the gene ontology task at BioCreative IV.

Mao Y, Van Auken K, Li D, Arighi CN, McQuilton P, Hayman GT, Tweedie S, Schaeffer ML, Laulederkind SJ, Wang SJ, Gobeill J, Ruch P, Luu AT, Kim JJ, Chiang JH, Chen YD, Yang CJ, Liu H, Zhu D, Li Y, Yu H, Emadzadeh E, Gonzalez G, Chen JM, Dai HJ, Lu Z.

Database (Oxford). 2014 Aug 25;2014. pii: bau086. doi: 10.1093/database/bau086. Print 2014.

6.

BC4GO: a full-text corpus for the BioCreative IV GO task.

Van Auken K, Schaeffer ML, McQuilton P, Laulederkind SJ, Li D, Wang SJ, Hayman GT, Tweedie S, Arighi CN, Done J, Müller HM, Sternberg PW, Mao Y, Wei CH, Lu Z.

Database (Oxford). 2014 Jul 28;2014. pii: bau074. doi: 10.1093/database/bau074. Print 2014.

7.

tagtog: interactive and text-mining-assisted annotation of gene mentions in PLOS full-text articles.

Cejuela JM, McQuilton P, Ponting L, Marygold SJ, Stefancsik R, Millburn GH, Rost B; FlyBase Consortium.

Database (Oxford). 2014 Apr 7;2014(0):bau033. doi: 10.1093/database/bau033. Print 2014.

8.

FlyBase 102--advanced approaches to interrogating FlyBase.

St Pierre SE, Ponting L, Stefancsik R, McQuilton P; FlyBase Consortium.

Nucleic Acids Res. 2014 Jan;42(Database issue):D780-8. doi: 10.1093/nar/gkt1092. Epub 2013 Nov 13.

9.

The Drosophila phenotype ontology.

Osumi-Sutherland D, Marygold SJ, Millburn GH, McQuilton PA, Ponting L, Stefancsik R, Falls K, Brown NH, Gkoutos GV.

J Biomed Semantics. 2013 Oct 18;4(1):30. doi: 10.1186/2041-1480-4-30.

10.

Opportunities for text mining in the FlyBase genetic literature curation workflow.

McQuilton P; FlyBase Consortium.

Database (Oxford). 2012 Nov 17;2012:bas039. doi: 10.1093/database/bas039. Print 2012.

11.

FlyBase 101--the basics of navigating FlyBase.

McQuilton P, St Pierre SE, Thurmond J; FlyBase Consortium.

Nucleic Acids Res. 2012 Jan;40(Database issue):D706-14. doi: 10.1093/nar/gkr1030. Epub 2011 Nov 29.

12.

Inside FlyBase: biocuration as a career.

St Pierre S, McQuilton P.

Fly (Austin). 2009 Jan-Mar;3(1):112-4. Epub 2009 Jan 6.

13.

Drosophila neurotrophins reveal a common mechanism for nervous system formation.

Zhu B, Pennack JA, McQuilton P, Forero MG, Mizuguchi K, Sutcliffe B, Gu CJ, Fenton JC, Hidalgo A.

PLoS Biol. 2008 Nov 18;6(11):e284. doi: 10.1371/journal.pbio.0060284.

14.

FlyBase: enhancing Drosophila Gene Ontology annotations.

Tweedie S, Ashburner M, Falls K, Leyland P, McQuilton P, Marygold S, Millburn G, Osumi-Sutherland D, Schroeder A, Seal R, Zhang H; FlyBase Consortium.

Nucleic Acids Res. 2009 Jan;37(Database issue):D555-9. doi: 10.1093/nar/gkn788. Epub 2008 Oct 23.

15.

Natural language processing in aid of FlyBase curators.

Karamanis N, Seal R, Lewin I, McQuilton P, Vlachos A, Gasperin C, Drysdale R, Briscoe T.

BMC Bioinformatics. 2008 Apr 14;9:193. doi: 10.1186/1471-2105-9-193.

16.

Neurotrophic and gliatrophic contexts in Drosophila.

Hidalgo A, Learte AR, McQuilton P, Pennack J, Zhu B.

Brain Behav Evol. 2006;68(3):173-80. Epub 2006 Aug 14. Review.

PMID:
16912470

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