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Items: 49

1.

Two-way mixed-effects methods for joint association analysis using both host and pathogen genomes.

Wang M, Roux F, Bartoli C, Huard-Chauveau C, Meyer C, Lee H, Roby D, McPeek MS, Bergelson J.

Proc Natl Acad Sci U S A. 2018 Jun 12;115(24):E5440-E5449. doi: 10.1073/pnas.1710980115. Epub 2018 May 30.

2.

L-GATOR: Genetic Association Testing for a Longitudinally Measured Quantitative Trait in Samples with Related Individuals.

Wu X, McPeek MS.

Am J Hum Genet. 2018 Apr 5;102(4):574-591. doi: 10.1016/j.ajhg.2018.02.016.

3.

CERAMIC: Case-Control Association Testing in Samples with Related Individuals, Based on Retrospective Mixed Model Analysis with Adjustment for Covariates.

Zhong S, Jiang D, McPeek MS.

PLoS Genet. 2016 Oct 3;12(10):e1006329. doi: 10.1371/journal.pgen.1006329. eCollection 2016 Oct.

4.

G-STRATEGY: Optimal Selection of Individuals for Sequencing in Genetic Association Studies.

Wang M, Jakobsdottir J, Smith AV, McPeek MS.

Genet Epidemiol. 2016 Sep;40(6):446-60. doi: 10.1002/gepi.21982. Epub 2016 Jun 3.

5.

Retrospective Binary-Trait Association Test Elucidates Genetic Architecture of Crohn Disease.

Jiang D, Zhong S, McPeek MS.

Am J Hum Genet. 2016 Feb 4;98(2):243-55. doi: 10.1016/j.ajhg.2015.12.012. Epub 2016 Jan 28.

6.

Retrospective Association Analysis of Binary Traits: Overcoming Some Limitations of the Additive Polygenic Model.

Jiang D, Mbatchou J, McPeek MS.

Hum Hered. 2015;80(4):187-95. doi: 10.1159/000446957. Epub 2016 Sep 1. Review.

7.

Robust rare variant association testing for quantitative traits in samples with related individuals.

Jiang D, McPeek MS.

Genet Epidemiol. 2014 Jan;38(1):10-20. doi: 10.1002/gepi.21775. Epub 2013 Nov 18.

8.

MASTOR: mixed-model association mapping of quantitative traits in samples with related individuals.

Jakobsdottir J, McPeek MS.

Am J Hum Genet. 2013 May 2;92(5):652-66. doi: 10.1016/j.ajhg.2013.03.014.

9.

BLUP genotype imputation for case-control association testing with related individuals and missing data.

McPeek MS.

J Comput Biol. 2012 Jun;19(6):756-65. doi: 10.1089/cmb.2012.0024.

10.

XM: association testing on the X-chromosome in case-control samples with related individuals.

Thornton T, Zhang Q, Cai X, Ober C, McPeek MS.

Genet Epidemiol. 2012 Jul;36(5):438-50. doi: 10.1002/gepi.21638. Epub 2012 May 2.

11.
12.

ROADTRIPS: case-control association testing with partially or completely unknown population and pedigree structure.

Thornton T, McPeek MS.

Am J Hum Genet. 2010 Feb 12;86(2):172-84. doi: 10.1016/j.ajhg.2010.01.001. Epub 2010 Feb 4.

13.

Laplacian eigenfunctions learn population structure.

Zhang J, Niyogi P, McPeek MS.

PLoS One. 2009 Dec 1;4(12):e7928. doi: 10.1371/journal.pone.0007928.

14.

ATRIUM: testing untyped SNPs in case-control association studies with related individuals.

Wang Z, McPeek MS.

Am J Hum Genet. 2009 Nov;85(5):667-78. doi: 10.1016/j.ajhg.2009.10.006.

15.

Complex genetic interactions underlying expression differences between Drosophila races: analysis of chromosome substitutions.

Wang HY, Fu Y, McPeek MS, Lu X, Nuzhdin S, Xu A, Lu J, Wu ML, Wu CI.

Proc Natl Acad Sci U S A. 2008 Apr 29;105(17):6362-7. doi: 10.1073/pnas.0711774105. Epub 2008 Apr 22.

16.

Case-control association testing with related individuals: a more powerful quasi-likelihood score test.

Thornton T, McPeek MS.

Am J Hum Genet. 2007 Aug;81(2):321-37. Epub 2007 Jul 10.

17.

Correlation of intergenerational family sizes suggests a genetic component of reproductive fitness.

Pluzhnikov A, Nolan DK, Tan Z, McPeek MS, Ober C.

Am J Hum Genet. 2007 Jul;81(1):165-9. Epub 2007 May 2.

18.

Likelihood-based inference for multi-color optical mapping.

Tong L, Mets L, McPeek MS.

Stat Appl Genet Mol Biol. 2007;6:Article5. Epub 2007 Feb 10.

PMID:
17402920
19.

Multipoint linkage-disequilibrium mapping with haplotype-block structure.

Zheng M, McPeek MS.

Am J Hum Genet. 2007 Jan;80(1):112-25. Epub 2006 Nov 30.

20.

Incorporating interference into linkage analysis for experimental crosses.

Armstrong NJ, McPeek MS, Speed TP.

Biostatistics. 2006 Jul;7(3):374-86. Epub 2005 Dec 14.

PMID:
16354713
21.

Multilocus linkage disequilibrium mapping by the decay of haplotype sharing with samples of related individuals.

Zhang J, Schneider D, Ober C, McPeek MS.

Genet Epidemiol. 2005 Sep;29(2):128-40.

PMID:
16049966
22.

Testing for Hardy-Weinberg equilibrium in samples with related individuals.

Bourgain C, Abney M, Schneider D, Ober C, McPeek MS.

Genetics. 2004 Dec;168(4):2349-61. Epub 2004 Sep 15.

23.

Genome-wide association study identifies ITGB3 as a QTL for whole blood serotonin.

Weiss LA, Veenstra-Vanderweele J, Newman DL, Kim SJ, Dytch H, McPeek MS, Cheng S, Ober C, Cook EH Jr, Abney M.

Eur J Hum Genet. 2004 Nov;12(11):949-54.

24.

Best linear unbiased allele-frequency estimation in complex pedigrees.

McPeek MS, Wu X, Ober C.

Biometrics. 2004 Jun;60(2):359-67.

PMID:
15180661
25.

Are common disease susceptibility alleles the same in outbred and founder populations?

Newman DL, Hoffjan S, Bourgain C, Abney M, Nicolae RI, Profits ET, Grow MA, Walker K, Steiner L, Parry R, Reynolds R, McPeek MS, Cheng S, Ober C.

Eur J Hum Genet. 2004 Jul;12(7):584-90.

26.

Novel case-control test in a founder population identifies P-selectin as an atopy-susceptibility locus.

Bourgain C, Hoffjan S, Nicolae R, Newman D, Steiner L, Walker K, Reynolds R, Ober C, McPeek MS.

Am J Hum Genet. 2003 Sep;73(3):612-26. Epub 2003 Aug 15.

27.

Enhanced pedigree error detection.

Sun L, Wilder K, McPeek MS.

Hum Hered. 2002;54(2):99-110.

PMID:
12566741
28.

Major loci influencing serum triglyceride levels on 2q14 and 9p21 localized by homozygosity-by-descent mapping in a large Hutterite pedigree.

Newman DL, Abney M, Dytch H, Parry R, McPeek MS, Ober C.

Hum Mol Genet. 2003 Jan 15;12(2):137-44.

PMID:
12499394
30.

Detection of mis-specified relationships in inbred and outbred pedigrees.

Sun L, Abney M, McPeek MS.

Genet Epidemiol. 2001;21 Suppl 1:S36-41.

PMID:
11793699
31.

A statistical method for identification of polymorphisms that explain a linkage result.

Sun L, Cox NJ, McPeek MS.

Am J Hum Genet. 2002 Feb;70(2):399-411. Epub 2002 Jan 8.

32.

The importance of genealogy in determining genetic associations with complex traits.

Newman DL, Abney M, McPeek MS, Ober C, Cox NJ.

Am J Hum Genet. 2001 Nov;69(5):1146-8. No abstract available.

33.

The genetic dissection of complex traits in a founder population.

Ober C, Abney M, McPeek MS.

Am J Hum Genet. 2001 Nov;69(5):1068-79. Epub 2001 Oct 3. Erratum in: Am J Hum Genet 2002 Jan;70(1):284.

34.

Broad and narrow heritabilities of quantitative traits in a founder population.

Abney M, McPeek MS, Ober C.

Am J Hum Genet. 2001 May;68(5):1302-7. Epub 2001 Apr 10.

35.

From mouse to human: fine mapping of quantitative trait loci in a model organism.

McPeek MS.

Proc Natl Acad Sci U S A. 2000 Nov 7;97(23):12389-90. Review. No abstract available.

36.

Estimation of variance components of quantitative traits in inbred populations.

Abney M, McPeek MS, Ober C.

Am J Hum Genet. 2000 Feb;66(2):629-50.

37.
38.

Meiotic segregation analysis of RB1 alleles in retinoblastoma pedigrees by use of single-sperm typing.

Girardet A, McPeek MS, Leeflang EP, Munier F, Arnheim N, Claustres M, Pellestor F.

Am J Hum Genet. 2000 Jan;66(1):167-75.

39.

SPERMSEG: analysis of segregation distortion in single-sperm data.

McPeek MS.

Am J Hum Genet. 1999 Oct;65(4):1195-7. No abstract available.

41.

French Machado-Joseph disease patients do not exhibit gametic segregation distortion: a sperm typing analysis.

Grewal RP, Cancel G, Leeflang EP, Dürr A, McPeek MS, Draghinas D, Yao X, Stevanin G, Alnot MO, Brice A, Arnheim N.

Hum Mol Genet. 1999 Sep;8(9):1779-84.

PMID:
10441343
42.
43.
44.

Statistical analysis of chromatid interference.

Zhao H, McPeek MS, Speed TP.

Genetics. 1995 Feb;139(2):1057-65.

45.

Statistical analysis of crossover interference using the chi-square model.

Zhao H, Speed TP, McPeek MS.

Genetics. 1995 Feb;139(2):1045-56.

46.

Modeling interference in genetic recombination.

McPeek MS, Speed TP.

Genetics. 1995 Feb;139(2):1031-44.

47.

Atypical regions in large genomic DNA sequences.

Scherer S, McPeek MS, Speed TP.

Proc Natl Acad Sci U S A. 1994 Jul 19;91(15):7134-8.

48.

Robustness of the no-interference model for ordering genetic markers.

Speed TP, McPeek MS, Evans SN.

Proc Natl Acad Sci U S A. 1992 Apr 1;89(7):3103-6.

49.

A Bayesian analysis for mapping from radiation hybrid data.

Guerra R, McPeek MS, Speed TP, Stewart PM.

Cytogenet Cell Genet. 1992;59(2-3):104-6. No abstract available.

PMID:
1737469

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