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Items: 14


Predicting Growth and Carcass Traits in Swine Using Microbiome Data and Machine Learning Algorithms.

Maltecca C, Lu D, Schillebeeckx C, McNulty NP, Schwab C, Shull C, Tiezzi F.

Sci Rep. 2019 Apr 25;9(1):6574. doi: 10.1038/s41598-019-43031-x.


Host contributes to longitudinal diversity of fecal microbiota in swine selected for lean growth.

Lu D, Tiezzi F, Schillebeeckx C, McNulty NP, Schwab C, Shull C, Maltecca C.

Microbiome. 2018 Jan 4;6(1):4. doi: 10.1186/s40168-017-0384-1.


Spatial organization of a model 15-member human gut microbiota established in gnotobiotic mice.

Mark Welch JL, Hasegawa Y, McNulty NP, Gordon JI, Borisy GG.

Proc Natl Acad Sci U S A. 2017 Oct 24;114(43):E9105-E9114. doi: 10.1073/pnas.1711596114. Epub 2017 Oct 9.


Genetic determinants of in vivo fitness and diet responsiveness in multiple human gut Bacteroides.

Wu M, McNulty NP, Rodionov DA, Khoroshkin MS, Griffin NW, Cheng J, Latreille P, Kerstetter RA, Terrapon N, Henrissat B, Osterman AL, Gordon JI.

Science. 2015 Oct 2;350(6256):aac5992. doi: 10.1126/science.aac5992.


Gnotobiotic mouse model of phage-bacterial host dynamics in the human gut.

Reyes A, Wu M, McNulty NP, Rohwer FL, Gordon JI.

Proc Natl Acad Sci U S A. 2013 Dec 10;110(50):20236-41. doi: 10.1073/pnas.1319470110. Epub 2013 Nov 20.


Effects of diet on resource utilization by a model human gut microbiota containing Bacteroides cellulosilyticus WH2, a symbiont with an extensive glycobiome.

McNulty NP, Wu M, Erickson AR, Pan C, Erickson BK, Martens EC, Pudlo NA, Muegge BD, Henrissat B, Hettich RL, Gordon JI.

PLoS Biol. 2013;11(8):e1001637. doi: 10.1371/journal.pbio.1001637. Epub 2013 Aug 20.


Transcriptomic and proteomic analyses of a Wolbachia-free filarial parasite provide evidence of trans-kingdom horizontal gene transfer.

McNulty SN, Abubucker S, Simon GM, Mitreva M, McNulty NP, Fischer K, Curtis KC, Brattig NW, Weil GJ, Fischer PU.

PLoS One. 2012;7(9):e45777. doi: 10.1371/journal.pone.0045777. Epub 2012 Sep 26.


Recognition and degradation of plant cell wall polysaccharides by two human gut symbionts.

Martens EC, Lowe EC, Chiang H, Pudlo NA, Wu M, McNulty NP, Abbott DW, Henrissat B, Gilbert HJ, Bolam DN, Gordon JI.

PLoS Biol. 2011 Dec;9(12):e1001221. doi: 10.1371/journal.pbio.1001221. Epub 2011 Dec 20.


The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic mice and monozygotic twins.

McNulty NP, Yatsunenko T, Hsiao A, Faith JJ, Muegge BD, Goodman AL, Henrissat B, Oozeer R, Cools-Portier S, Gobert G, Chervaux C, Knights D, Lozupone CA, Knight R, Duncan AE, Bain JR, Muehlbauer MJ, Newgard CB, Heath AC, Gordon JI.

Sci Transl Med. 2011 Oct 26;3(106):106ra106. doi: 10.1126/scitranslmed.3002701.


Predicting a human gut microbiota's response to diet in gnotobiotic mice.

Faith JJ, McNulty NP, Rey FE, Gordon JI.

Science. 2011 Jul 1;333(6038):101-4. doi: 10.1126/science.1206025. Epub 2011 May 19.


Creating and characterizing communities of human gut microbes in gnotobiotic mice.

Faith JJ, Rey FE, O'Donnell D, Karlsson M, McNulty NP, Kallstrom G, Goodman AL, Gordon JI.

ISME J. 2010 Sep;4(9):1094-8. doi: 10.1038/ismej.2010.110. Epub 2010 Jul 22. Review. No abstract available.


Identifying genetic determinants needed to establish a human gut symbiont in its habitat.

Goodman AL, McNulty NP, Zhao Y, Leip D, Mitra RD, Lozupone CA, Knight R, Gordon JI.

Cell Host Microbe. 2009 Sep 17;6(3):279-89. doi: 10.1016/j.chom.2009.08.003.


IgA response to symbiotic bacteria as a mediator of gut homeostasis.

Peterson DA, McNulty NP, Guruge JL, Gordon JI.

Cell Host Microbe. 2007 Nov 15;2(5):328-39.


Niche partitioning among Prochlorococcus ecotypes along ocean-scale environmental gradients.

Johnson ZI, Zinser ER, Coe A, McNulty NP, Woodward EM, Chisholm SW.

Science. 2006 Mar 24;311(5768):1737-40.

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