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Items: 1 to 50 of 67

1.

Variation in the angiosperm ionome.

Neugebauer K, Broadley MR, El-Serehy HA, George TS, McNicol JW, Moraes MF, White PJ.

Physiol Plant. 2018 Feb 7. doi: 10.1111/ppl.12700. [Epub ahead of print]

PMID:
29412469
2.

Lineage-Specific Differentiation Is Influenced by State of Human Pluripotency.

Lee JH, Laronde S, Collins TJ, Shapovalova Z, Tanasijevic B, McNicol JD, Fiebig-Comyn A, Benoit YD, Lee JB, Mitchell RR, Bhatia M.

Cell Rep. 2017 Apr 4;19(1):20-35. doi: 10.1016/j.celrep.2017.03.036.

3.

Mapping and expression of genes associated with raspberry fruit ripening and softening.

Simpson CG, Cullen DW, Hackett CA, Smith K, Hallett PD, McNicol J, Woodhead M, Graham J.

Theor Appl Genet. 2017 Mar;130(3):557-572. doi: 10.1007/s00122-016-2835-7. Epub 2016 Dec 9.

PMID:
27942774
4.

Monitoring Alternative Splicing Changes in Arabidopsis Circadian Clock Genes.

Simpson CG, Fuller J, Calixto CP, McNicol J, Booth C, Brown JW, Staiger D.

Methods Mol Biol. 2016;1398:119-32. doi: 10.1007/978-1-4939-3356-3_11.

PMID:
26867620
5.

Impact of light-exposure on the metabolite balance of transgenic potato tubers with modified glycoalkaloid biosynthesis.

Shepherd LV, Hackett CA, Alexander CJ, McNicol JW, Sungurtas JA, McRae D, McCue KF, Belknap WR, Davies HV.

Food Chem. 2016 Jun 1;200:263-73. doi: 10.1016/j.foodchem.2015.12.095. Epub 2015 Dec 31.

PMID:
26830588
6.

Neoplastic human embryonic stem cells as a model of radiation resistance of human cancer stem cells.

Dingwall S, Lee JB, Guezguez B, Fiebig A, McNicol J, Boreham D, Collins TJ, Bhatia M.

Oncotarget. 2015 Sep 8;6(26):22258-69.

7.

Towards an understanding of the control of 'crumbly' fruit in red raspberry.

Graham J, Smith K, McCallum S, Hedley PE, Cullen DW, Dolan A, Milne L, McNicol JW, Hackett CA.

Springerplus. 2015 May 15;4:223. doi: 10.1186/s40064-015-1010-y. eCollection 2015.

8.

Single Transcription Factor Conversion of Human Blood Fate to NPCs with CNS and PNS Developmental Capacity.

Lee JH, Mitchell RR, McNicol JD, Shapovalova Z, Laronde S, Tanasijevic B, Milsom C, Casado F, Fiebig-Comyn A, Collins TJ, Singh KK, Bhatia M.

Cell Rep. 2015 Jun 9;11(9):1367-76. doi: 10.1016/j.celrep.2015.04.056. Epub 2015 May 21.

9.

Modifying glycoalkaloid content in transgenic potato--Metabolome impacts.

Shepherd LV, Hackett CA, Alexander CJ, McNicol JW, Sungurtas JA, Stewart D, McCue KF, Belknap WR, Davies HV.

Food Chem. 2015 Nov 15;187:437-43. doi: 10.1016/j.foodchem.2015.04.111. Epub 2015 Apr 24.

PMID:
25977048
10.

Arabidopsis PTB1 and PTB2 proteins negatively regulate splicing of a mini-exon splicing reporter and affect alternative splicing of endogenous genes differentially.

Simpson CG, Lewandowska D, Liney M, Davidson D, Chapman S, Fuller J, McNicol J, Shaw P, Brown JW.

New Phytol. 2014 Jul;203(2):424-36. doi: 10.1111/nph.12821. Epub 2014 Apr 22.

11.

Day length dependent restructuring of the leaf transcriptome and metabolome in potato genotypes with contrasting tuberization phenotypes.

Morris WL, Hancock RD, Ducreux LJ, Morris JA, Usman M, Verrall SR, Sharma SK, Bryan G, McNicol JW, Hedley PE, Taylor MA.

Plant Cell Environ. 2014 Jun;37(6):1351-63. doi: 10.1111/pce.12238. Epub 2013 Dec 12.

12.

The SERRATE protein is involved in alternative splicing in Arabidopsis thaliana.

Raczynska KD, Stepien A, Kierzkowski D, Kalak M, Bajczyk M, McNicol J, Simpson CG, Szweykowska-Kulinska Z, Brown JW, Jarmolowski A.

Nucleic Acids Res. 2014 Jan;42(2):1224-44. doi: 10.1093/nar/gkt894. Epub 2013 Oct 16.

13.

Use of the UriSwab collection device for testing of Chlamydia trachomatis and Neisseria gonorrhoeae: implications for a postal testing service.

McNicol J, Debattista J.

Int J STD AIDS. 2013 Jun;24(6):477-80. doi: 10.1177/0956462412472834. Epub 2013 Jul 19.

PMID:
23970751
14.

Infra-red thermography for high throughput field phenotyping in Solanum tuberosum.

Prashar A, Yildiz J, McNicol JW, Bryan GJ, Jones HG.

PLoS One. 2013 Jun 7;8(6):e65816. doi: 10.1371/journal.pone.0065816. Print 2013.

15.

Downstairs drivers--root herbivores shape communities of above-ground herbivores and natural enemies via changes in plant nutrients.

Johnson SN, Mitchell C, McNicol JW, Thompson J, Karley AJ.

J Anim Ecol. 2013 Sep;82(5):1021-30. doi: 10.1111/1365-2656.12070. Epub 2013 Mar 14.

PMID:
23488539
16.

Mutation of Arabidopsis spliceosomal timekeeper locus1 causes circadian clock defects.

Jones MA, Williams BA, McNicol J, Simpson CG, Brown JW, Harmer SL.

Plant Cell. 2012 Oct;24(10):4066-82. doi: 10.1105/tpc.112.104828. Epub 2012 Oct 30.

17.

Genome analyses of an aggressive and invasive lineage of the Irish potato famine pathogen.

Cooke DE, Cano LM, Raffaele S, Bain RA, Cooke LR, Etherington GJ, Deahl KL, Farrer RA, Gilroy EM, Goss EM, Grünwald NJ, Hein I, MacLean D, McNicol JW, Randall E, Oliva RF, Pel MA, Shaw DS, Squires JN, Taylor MC, Vleeshouwers VG, Birch PR, Lees AK, Kamoun S.

PLoS Pathog. 2012;8(10):e1002940. doi: 10.1371/journal.ppat.1002940. Epub 2012 Oct 4.

18.

Lengthened G1 phase indicates differentiation status in human embryonic stem cells.

Calder A, Roth-Albin I, Bhatia S, Pilquil C, Lee JH, Bhatia M, Levadoux-Martin M, McNicol J, Russell J, Collins T, Draper JS.

Stem Cells Dev. 2013 Jan 15;22(2):279-95. doi: 10.1089/scd.2012.0168. Epub 2012 Aug 29.

PMID:
22827698
19.

Testing the distinctness of shoot ionomes of angiosperm families using the Rothamsted Park Grass Continuous Hay Experiment.

White PJ, Broadley MR, Thompson JA, McNicol JW, Crawley MJ, Poulton PR, Johnston AE.

New Phytol. 2012 Oct;196(1):101-9. doi: 10.1111/j.1469-8137.2012.04228.x. Epub 2012 Jul 17.

20.

Identification of drugs including a dopamine receptor antagonist that selectively target cancer stem cells.

Sachlos E, Risueño RM, Laronde S, Shapovalova Z, Lee JH, Russell J, Malig M, McNicol JD, Fiebig-Comyn A, Graham M, Levadoux-Martin M, Lee JB, Giacomelli AO, Hassell JA, Fischer-Russell D, Trus MR, Foley R, Leber B, Xenocostas A, Brown ED, Collins TJ, Bhatia M.

Cell. 2012 Jun 8;149(6):1284-97. doi: 10.1016/j.cell.2012.03.049. Epub 2012 May 24.

21.

Alternative splicing and nonsense-mediated decay modulate expression of important regulatory genes in Arabidopsis.

Kalyna M, Simpson CG, Syed NH, Lewandowska D, Marquez Y, Kusenda B, Marshall J, Fuller J, Cardle L, McNicol J, Dinh HQ, Barta A, Brown JW.

Nucleic Acids Res. 2012 Mar;40(6):2454-69. doi: 10.1093/nar/gkr932. Epub 2011 Nov 29.

22.

Cell fate potential of human pluripotent stem cells is encoded by histone modifications.

Hong SH, Rampalli S, Lee JB, McNicol J, Collins T, Draper JS, Bhatia M.

Cell Stem Cell. 2011 Jul 8;9(1):24-36. doi: 10.1016/j.stem.2011.06.002.

23.

Highly parallel gene-to-BAC addressing using microarrays.

Liu H, McNicol J, Bayer M, Morris JA, Cardle L, Marshall DF, Schulte D, Stein N, Shi BJ, Taudien S, Waugh R, Hedley PE.

Biotechniques. 2011 Mar;50(3):165-74. doi: 10.2144/000113627.

24.

Relationships between volatile and non-volatile metabolites and attributes of processed potato flavour.

Morris WL, Shepherd T, Verrall SR, McNicol JW, Taylor MA.

Phytochemistry. 2010 Oct;71(14-15):1765-73. doi: 10.1016/j.phytochem.2010.07.003. Epub 2010 Aug 2.

PMID:
20678781
25.

Flavonoid profiling and transcriptome analysis reveals new gene-metabolite correlations in tubers of Solanum tuberosum L.

Stushnoff C, Ducreux LJ, Hancock RD, Hedley PE, Holm DG, McDougall GJ, McNicol JW, Morris J, Morris WL, Sungurtas JA, Verrall SR, Zuber T, Taylor MA.

J Exp Bot. 2010 Feb;61(4):1225-38. doi: 10.1093/jxb/erp394. Epub 2010 Jan 28.

26.

A metabolomics study of cultivated potato (Solanum tuberosum) groups Andigena, Phureja, Stenotomum, and tuberosum using gas chromatography-mass spectrometry.

Dobson G, Shepherd T, Verrall SR, Griffiths WD, Ramsay G, McNicol JW, Davies HV, Stewart D.

J Agric Food Chem. 2010 Jan 27;58(2):1214-23. doi: 10.1021/jf903104b.

PMID:
20028086
27.

Involvement of the nuclear cap-binding protein complex in alternative splicing in Arabidopsis thaliana.

Raczynska KD, Simpson CG, Ciesiolka A, Szewc L, Lewandowska D, McNicol J, Szweykowska-Kulinska Z, Brown JW, Jarmolowski A.

Nucleic Acids Res. 2010 Jan;38(1):265-78. doi: 10.1093/nar/gkp869. Epub 2009 Oct 28.

28.

The development of maternity care assistants in Scotland.

Rennie AM, Gibb S, Hourston A, Bedford H, McNicol J.

Pract Midwife. 2009 Sep;12(8):14, 16-9. No abstract available.

PMID:
19813359
29.

Elevated CO2 and aboveground-belowground herbivory by the clover root weevil.

Johnson SN, McNicol JW.

Oecologia. 2010 Jan;162(1):209-16. doi: 10.1007/s00442-009-1428-4. Epub 2009 Aug 11.

PMID:
19669795
30.

Phytochemical diversity in tubers of potato cultivars and landraces using a GC-MS metabolomics approach.

Dobson G, Shepherd T, Verrall SR, Conner S, McNicol JW, Ramsay G, Shepherd LV, Davies HV, Stewart D.

J Agric Food Chem. 2008 Nov 12;56(21):10280-91. doi: 10.1021/jf801370b. Epub 2008 Oct 21.

PMID:
18937493
31.

Evidence of neutral transcriptome evolution in plants.

Broadley MR, White PJ, Hammond JP, Graham NS, Bowen HC, Emmerson ZF, Fray RG, Iannetta PP, McNicol JW, May ST.

New Phytol. 2008;180(3):587-93. doi: 10.1111/j.1469-8137.2008.02640.x. Epub 2008 Sep 17.

32.

Molecular regulation of somatic embryogenesis in potato: an auxin led perspective.

Sharma SK, Millam S, Hedley PE, McNicol J, Bryan GJ.

Plant Mol Biol. 2008 Sep;68(1-2):185-201. doi: 10.1007/s11103-008-9360-2. Epub 2008 Jun 16.

PMID:
18553172
33.

Alternative splicing in plants.

Simpson CG, Lewandowska D, Fuller J, Maronova M, Kalyna M, Davidson D, McNicol J, Raczynska D, Jarmolowski A, Barta A, Brown JW.

Biochem Soc Trans. 2008 Jun;36(Pt 3):508-10. doi: 10.1042/BST0360508. Review.

PMID:
18481991
34.

Monitoring changes in alternative precursor messenger RNA splicing in multiple gene transcripts.

Simpson CG, Fuller J, Maronova M, Kalyna M, Davidson D, McNicol J, Barta A, Brown JW.

Plant J. 2008 Mar;53(6):1035-48. Epub 2007 Dec 15.

35.

Relationship between assemblages of mycorrhizal fungi and bacteria on grass roots.

Singh BK, Nunan N, Ridgway KP, McNicol J, Young JP, Daniell TJ, Prosser JI, Millard P.

Environ Microbiol. 2008 Feb;10(2):534-41. Epub 2007 Dec 13.

PMID:
18081854
36.

Effects of agricultural production systems and their components on protein profiles of potato tubers.

Lehesranta SJ, Koistinen KM, Massat N, Davies HV, Shepherd LVT, McNicol JW, Cakmak I, Cooper J, Lück L, Kärenlampi SO, Leifert C.

Proteomics. 2007 Feb;7(4):597-604. doi: 10.1002/pmic.200600889.

PMID:
17309105
37.

Co-ordinated gene expression during phases of dormancy release in raspberry (Rubus idaeus L.) buds.

Mazzitelli L, Hancock RD, Haupt S, Walker PG, Pont SD, McNicol J, Cardle L, Morris J, Viola R, Brennan R, Hedley PE, Taylor MA.

J Exp Bot. 2007;58(5):1035-45. Epub 2007 Jan 22.

PMID:
17244630
38.

Proteomic analysis of the potato tuber life cycle.

Lehesranta SJ, Davies HV, Shepherd LV, Koistinen KM, Massat N, Nunan N, McNicol JW, Kärenlampi SO.

Proteomics. 2006 Nov;6(22):6042-52.

PMID:
17106910
40.

Multivariate analysis of protein profiles of metal hyperaccumulator Thlaspi caerulescens accessions.

Tuomainen MH, Nunan N, Lehesranta SJ, Tervahauta AI, Hassinen VH, Schat H, Koistinen KM, Auriola S, McNicol J, Kärenlampi SO.

Proteomics. 2006 Jun;6(12):3696-706.

PMID:
16691554
41.

Sheep-urine-induced changes in soil microbial community structure.

Nunan N, Singh B, Reid E, Ord B, Papert A, Squires J, Prosser JI, Wheatley RE, McNicol J, Millard P.

FEMS Microbiol Ecol. 2006 May;56(2):310-20.

42.

An atlas of gene expression from seed to seed through barley development.

Druka A, Muehlbauer G, Druka I, Caldo R, Baumann U, Rostoks N, Schreiber A, Wise R, Close T, Kleinhofs A, Graner A, Schulman A, Langridge P, Sato K, Hayes P, McNicol J, Marshall D, Waugh R.

Funct Integr Genomics. 2006 Jul;6(3):202-11. Epub 2006 Mar 18.

PMID:
16547597
43.

Links between plant and rhizoplane bacterial communities in grassland soils, characterized using molecular techniques.

Nunan N, Daniell TJ, Singh BK, Papert A, McNicol JW, Prosser JI.

Appl Environ Microbiol. 2005 Nov;71(11):6784-92.

44.

Comparison of tuber proteomes of potato varieties, landraces, and genetically modified lines.

Lehesranta SJ, Davies HV, Shepherd LV, Nunan N, McNicol JW, Auriola S, Koistinen KM, Suomalainen S, Kokko HI, Kärenlampi SO.

Plant Physiol. 2005 Jul;138(3):1690-9. Epub 2005 Jun 10.

45.

The impact of bacterial diet on the migration and navigation of Caenorhabditis elegans.

Rodger S, Griffiths BS, McNicol JW, Wheatley RW, Young IM.

Microb Ecol. 2004 Oct;48(3):358-65. Epub 2004 Sep 23.

PMID:
15692856
46.

Comparison of fatty acid and polar lipid contents of tubers from two potato species, Solanum tuberosum and Solanum phureja.

Dobson G, Griffiths DW, Davies HV, McNicol JW.

J Agric Food Chem. 2004 Oct 6;52(20):6306-14.

PMID:
15453705
47.

Spatial structure in soil chemical and microbiological properties in an upland grassland.

Ritz K, McNicol JW, Nunan N, Grayston S, Millard P, Atkinson D, Gollotte A, Habeshaw D, Boag B, Clegg CD, Griffiths BS, Wheatley RE, Glover LA, McCaig AE, Prosser JI.

FEMS Microbiol Ecol. 2004 Aug 1;49(2):191-205. doi: 10.1016/j.femsec.2004.03.005.

48.

Interval mapping of quantitative trait loci in autotetraploid species.

Hackett CA, Bradshaw JE, McNicol JW.

Genetics. 2001 Dec;159(4):1819-32.

49.

Construction of a genetic linkage map in tetraploid species using molecular markers.

Luo ZW, Hackett CA, Bradshaw JE, McNicol JW, Milbourne D.

Genetics. 2001 Mar;157(3):1369-85.

50.

Evaluation of phenotypic and molecular typing techniques for determining diversity in Erwinia carotovora subspp. atroseptica.

Toth IK, Bertheau Y, Hyman LJ, Laplaze L, López MM, McNicol J, Niepold F, Persson P, Salmond GP, Sletten A, van Der Wolf JM, Pérombelon MC.

J Appl Microbiol. 1999 Nov;87(5):770-81.

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