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Items: 1 to 50 of 66

1.

Towards a deeper haplotype mining of complex traits in rice with RFGB v2.0.

Wang CC, Yu H, Huang J, Wang WS, Faruquee M, Zhang F, Zhao XQ, Fu BY, Chen K, Zhang HL, Tai SS, Wei C, McNally KL, Alexandrov N, Gao XY, Li J, Li ZK, Xu JL, Zheng TQ.

Plant Biotechnol J. 2019 Jul 23. doi: 10.1111/pbi.13215. [Epub ahead of print] No abstract available.

2.

TRIM5α Restricts Flavivirus Replication by Targeting the Viral Protease for Proteasomal Degradation.

Chiramel AI, Meyerson NR, McNally KL, Broeckel RM, Montoya VR, Méndez-Solís O, Robertson SJ, Sturdevant GL, Lubick KJ, Nair V, Youseff BH, Ireland RM, Bosio CM, Kim K, Luban J, Hirsch VM, Taylor RT, Bouamr F, Sawyer SL, Best SM.

Cell Rep. 2019 Jun 11;27(11):3269-3283.e6. doi: 10.1016/j.celrep.2019.05.040.

3.

Variation in seed longevity among diverse Indica rice varieties.

Lee JS, Velasco-Punzalan M, Pacleb M, Valdez R, Kretzschmar T, McNally KL, Ismail AM, Sta Cruz PC, Hamilton NRS, Hay FR.

Ann Bot. 2019 Jun 10. pii: mcz093. doi: 10.1093/aob/mcz093. [Epub ahead of print]

PMID:
31180503
4.

TRAF6 Plays a Proviral Role in Tick-Borne Flavivirus Infection through Interaction with the NS3 Protease.

Youseff BH, Brewer TG, McNally KL, Izuogu AO, Lubick KJ, Presloid JB, Alqahtani S, Chattopadhyay S, Best SM, Hu X, Taylor RT.

iScience. 2019 May 31;15:489-501. doi: 10.1016/j.isci.2019.05.010. Epub 2019 May 11.

5.

Fine Scale Genomic Signals of Admixture and Alien Introgression among Asian Rice Landraces.

Santos JD, Chebotarov D, McNally KL, Bartholomé J, Droc G, Billot C, Glaszmann JC.

Genome Biol Evol. 2019 May 1;11(5):1358-1373. doi: 10.1093/gbe/evz084.

6.

Structural variants in 3000 rice genomes.

Fuentes RR, Chebotarov D, Duitama J, Smith S, De la Hoz JF, Mohiyuddin M, Wing RA, McNally KL, Tatarinova T, Grigoriev A, Mauleon R, Alexandrov N.

Genome Res. 2019 May;29(5):870-880. doi: 10.1101/gr.241240.118. Epub 2019 Apr 16.

7.

Leaf morphology, rather than plant water status, underlies genetic variation of rice leaf rolling under drought.

Cal AJ, Sanciangco M, Rebolledo MC, Luquet D, Torres RO, McNally KL, Henry A.

Plant Cell Environ. 2019 May;42(5):1532-1544. doi: 10.1111/pce.13514. Epub 2019 Feb 20.

8.

Genetic diversity, linkage disequilibrium, and population structure in a panel of Brazilian rice accessions.

Venske E, Stafen CF, de Oliveira VF, da Maia LC, de Magalhães Junior AM, McNally KL, Costa de Oliveira A, Pegoraro C.

J Appl Genet. 2019 Feb;60(1):27-31. doi: 10.1007/s13353-018-0475-0. Epub 2018 Oct 23.

PMID:
30353473
9.

Publisher Correction: Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza.

Stein JC, Yu Y, Copetti D, Zwickl DJ, Zhang L, Zhang C, Chougule K, Gao D, Iwata A, Goicoechea JL, Wei S, Wang J, Liao Y, Wang M, Jacquemin J, Becker C, Kudrna D, Zhang J, Londono CEM, Song X, Lee S, Sanchez P, Zuccolo A, Ammiraju JSS, Talag J, Danowitz A, Rivera LF, Gschwend AR, Noutsos C, Wu CC, Kao SM, Zeng JW, Wei FJ, Zhao Q, Feng Q, El Baidouri M, Carpentier MC, Lasserre E, Cooke R, da Rosa Farias D, da Maia LC, Dos Santos RS, Nyberg KG, McNally KL, Mauleon R, Alexandrov N, Schmutz J, Flowers D, Fan C, Weigel D, Jena KK, Wicker T, Chen M, Han B, Henry R, Hsing YC, Kurata N, de Oliveira AC, Panaud O, Jackson SA, Machado CA, Sanderson MJ, Long M, Ware D, Wing RA.

Nat Genet. 2018 Nov;50(11):1618. doi: 10.1038/s41588-018-0261-2.

PMID:
30291357
10.

Genome Wide Association Mapping of Grain and Straw Biomass Traits in the Rice Bengal and Assam Aus Panel (BAAP) Grown Under Alternate Wetting and Drying and Permanently Flooded Irrigation.

Norton GJ, Travis AJ, Douglas A, Fairley S, Alves EP, Ruang-Areerate P, Naredo MEB, McNally KL, Hossain M, Islam MR, Price AH.

Front Plant Sci. 2018 Sep 3;9:1223. doi: 10.3389/fpls.2018.01223. eCollection 2018.

11.

An imputation platform to enhance integration of rice genetic resources.

Wang DR, Agosto-Pérez FJ, Chebotarov D, Shi Y, Marchini J, Fitzgerald M, McNally KL, Alexandrov N, McCouch SR.

Nat Commun. 2018 Aug 29;9(1):3519. doi: 10.1038/s41467-018-05538-1.

12.

The Methyltransferase-Like Domain of Chikungunya Virus nsP2 Inhibits the Interferon Response by Promoting the Nuclear Export of STAT1.

Göertz GP, McNally KL, Robertson SJ, Best SM, Pijlman GP, Fros JJ.

J Virol. 2018 Aug 16;92(17). pii: e01008-18. doi: 10.1128/JVI.01008-18. Print 2018 Sep 1.

13.

An Immunocompetent Mouse Model of Zika Virus Infection.

Gorman MJ, Caine EA, Zaitsev K, Begley MC, Weger-Lucarelli J, Uccellini MB, Tripathi S, Morrison J, Yount BL, Dinnon KH 3rd, Rückert C, Young MC, Zhu Z, Robertson SJ, McNally KL, Ye J, Cao B, Mysorekar IU, Ebel GD, Baric RS, Best SM, Artyomov MN, Garcia-Sastre A, Diamond MS.

Cell Host Microbe. 2018 May 9;23(5):672-685.e6. doi: 10.1016/j.chom.2018.04.003.

14.

Lethal Zika Virus Disease Models in Young and Older Interferon α/β Receptor Knock Out Mice.

Marzi A, Emanuel J, Callison J, McNally KL, Arndt N, Chadinha S, Martellaro C, Rosenke R, Scott DP, Safronetz D, Whitehead SS, Best SM, Feldmann H.

Front Cell Infect Microbiol. 2018 Apr 11;8:117. doi: 10.3389/fcimb.2018.00117. eCollection 2018.

15.

Genomic variation in 3,010 diverse accessions of Asian cultivated rice.

Wang W, Mauleon R, Hu Z, Chebotarov D, Tai S, Wu Z, Li M, Zheng T, Fuentes RR, Zhang F, Mansueto L, Copetti D, Sanciangco M, Palis KC, Xu J, Sun C, Fu B, Zhang H, Gao Y, Zhao X, Shen F, Cui X, Yu H, Li Z, Chen M, Detras J, Zhou Y, Zhang X, Zhao Y, Kudrna D, Wang C, Li R, Jia B, Lu J, He X, Dong Z, Xu J, Li Y, Wang M, Shi J, Li J, Zhang D, Lee S, Hu W, Poliakov A, Dubchak I, Ulat VJ, Borja FN, Mendoza JR, Ali J, Li J, Gao Q, Niu Y, Yue Z, Naredo MEB, Talag J, Wang X, Li J, Fang X, Yin Y, Glaszmann JC, Zhang J, Li J, Hamilton RS, Wing RA, Ruan J, Zhang G, Wei C, Alexandrov N, McNally KL, Li Z, Leung H.

Nature. 2018 May;557(7703):43-49. doi: 10.1038/s41586-018-0063-9. Epub 2018 Apr 25.

PMID:
29695866
16.

Progress in single-access information systems for wheat and rice crop improvement.

Scheben A, Chan CK, Mansueto L, Mauleon R, Larmande P, Alexandrov N, Wing RA, McNally KL, Quesneville H, Edwards D.

Brief Bioinform. 2019 Mar 25;20(2):565-571. doi: 10.1093/bib/bby016.

PMID:
29659709
17.

Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza.

Stein JC, Yu Y, Copetti D, Zwickl DJ, Zhang L, Zhang C, Chougule K, Gao D, Iwata A, Goicoechea JL, Wei S, Wang J, Liao Y, Wang M, Jacquemin J, Becker C, Kudrna D, Zhang J, Londono CEM, Song X, Lee S, Sanchez P, Zuccolo A, Ammiraju JSS, Talag J, Danowitz A, Rivera LF, Gschwend AR, Noutsos C, Wu CC, Kao SM, Zeng JW, Wei FJ, Zhao Q, Feng Q, El Baidouri M, Carpentier MC, Lasserre E, Cooke R, Rosa Farias DD, da Maia LC, Dos Santos RS, Nyberg KG, McNally KL, Mauleon R, Alexandrov N, Schmutz J, Flowers D, Fan C, Weigel D, Jena KK, Wicker T, Chen M, Han B, Henry R, Hsing YC, Kurata N, de Oliveira AC, Panaud O, Jackson SA, Machado CA, Sanderson MJ, Long M, Ware D, Wing RA.

Nat Genet. 2018 Feb;50(2):285-296. doi: 10.1038/s41588-018-0040-0. Epub 2018 Jan 22. Erratum in: Nat Genet. 2018 Nov;50(11):1618.

PMID:
29358651
18.

Cutting Edge: CCR2 Is Not Required for Ly6Chi Monocyte Egress from the Bone Marrow but Is Necessary for Migration within the Brain in La Crosse Virus Encephalitis.

Winkler CW, Woods TA, Robertson SJ, McNally KL, Carmody AB, Best SM, Peterson KE.

J Immunol. 2018 Jan 15;200(2):471-476. doi: 10.4049/jimmunol.1701230. Epub 2017 Dec 15.

19.

Genetic Loci Governing Grain Yield and Root Development under Variable Rice Cultivation Conditions.

Catolos M, Sandhu N, Dixit S, Shamsudin NAA, Naredo MEB, McNally KL, Henry A, Diaz MG, Kumar A.

Front Plant Sci. 2017 Oct 16;8:1763. doi: 10.3389/fpls.2017.01763. eCollection 2017.

20.

Interferon signaling in Peromyscus leucopus confers a potent and specific restriction to vector-borne flaviviruses.

Izuogu AO, McNally KL, Harris SE, Youseff BH, Presloid JB, Burlak C, Munshi-South J, Best SM, Taylor RT.

PLoS One. 2017 Jun 26;12(6):e0179781. doi: 10.1371/journal.pone.0179781. eCollection 2017.

21.

Adaptive Immune Responses to Zika Virus Are Important for Controlling Virus Infection and Preventing Infection in Brain and Testes.

Winkler CW, Myers LM, Woods TA, Messer RJ, Carmody AB, McNally KL, Scott DP, Hasenkrug KJ, Best SM, Peterson KE.

J Immunol. 2017 May 1;198(9):3526-3535. doi: 10.4049/jimmunol.1601949. Epub 2017 Mar 22.

22.

Field-based high throughput phenotyping rapidly identifies genomic regions controlling yield components in rice.

Tanger P, Klassen S, Mojica JP, Lovell JT, Moyers BT, Baraoidan M, Naredo ME, McNally KL, Poland J, Bush DR, Leung H, Leach JE, McKay JK.

Sci Rep. 2017 Feb 21;7:42839. doi: 10.1038/srep42839.

23.

Rice SNP-seek database update: new SNPs, indels, and queries.

Mansueto L, Fuentes RR, Borja FN, Detras J, Abriol-Santos JM, Chebotarov D, Sanciangco M, Palis K, Copetti D, Poliakov A, Dubchak I, Solovyev V, Wing RA, Hamilton RS, Mauleon R, McNally KL, Alexandrov N.

Nucleic Acids Res. 2017 Jan 4;45(D1):D1075-D1081. doi: 10.1093/nar/gkw1135. Epub 2016 Nov 29.

24.

Nucleotide diversity analysis highlights functionally important genomic regions.

Tatarinova TV, Chekalin E, Nikolsky Y, Bruskin S, Chebotarov D, McNally KL, Alexandrov N.

Sci Rep. 2016 Oct 24;6:35730. doi: 10.1038/srep35730.

25.

Clinical Chemistry of Patients With Ebola in Monrovia, Liberia.

de Wit E, Kramer S, Prescott J, Rosenke K, Falzarano D, Marzi A, Fischer RJ, Safronetz D, Hoenen T, Groseth A, van Doremalen N, Bushmaker T, McNally KL, Feldmann F, Williamson BN, Best SM, Ebihara H, Damiani IA, Adamson B, Zoon KC, Nyenswah TG, Bolay FK, Massaquoi M, Sprecher A, Feldmann H, Munster VJ.

J Infect Dis. 2016 Oct 15;214(suppl 3):S303-S307. Epub 2016 Jul 28.

26.

Ebola Laboratory Response at the Eternal Love Winning Africa Campus, Monrovia, Liberia, 2014-2015.

de Wit E, Rosenke K, Fischer RJ, Marzi A, Prescott J, Bushmaker T, van Doremalen N, Emery SL, Falzarano D, Feldmann F, Groseth A, Hoenen T, Juma B, McNally KL, Ochieng M, Omballa V, Onyango CO, Owuor C, Rowe T, Safronetz D, Self J, Williamson BN, Zemtsova G, Grolla A, Kobinger G, Rayfield M, Ströher U, Strong JE, Best SM, Ebihara H, Zoon KC, Nichol ST, Nyenswah TG, Bolay FK, Massaquoi M, Feldmann H, Fields B.

J Infect Dis. 2016 Oct 15;214(suppl 3):S169-S176. Epub 2016 Jun 21.

27.

Assessment of ground transportation stress in juvenile Kemp's ridley sea turtles (Lepidochelys kempii).

Hunt KE, Innis CJ, Kennedy AE, McNally KL, Davis DG, Burgess EA, Merigo C.

Conserv Physiol. 2016 Mar 1;4(1):cov071. doi: 10.1093/conphys/cov071. eCollection 2016.

28.

Corrigendum: Open access resources for genome-wide association mapping in rice.

McCouch SR, Wright MH, Tung CW, Maron LG, McNally KL, Fitzgerald M, Singh N, DeClerck G, Perez FA, Korniliev P, Greenberg AJ, Naredo ME, Mercado SM, Harrington SE, Shi Y, Branchini DA, Kuser-Falcão PR, Leung H, Ebana K, Yano M, Eizenga G, McClung A, Mezey J.

Nat Commun. 2016 Apr 20;7:11346. doi: 10.1038/ncomms11346. No abstract available.

29.

Open access resources for genome-wide association mapping in rice.

McCouch SR, Wright MH, Tung CW, Maron LG, McNally KL, Fitzgerald M, Singh N, DeClerck G, Agosto-Perez F, Korniliev P, Greenberg AJ, Naredo ME, Mercado SM, Harrington SE, Shi Y, Branchini DA, Kuser-Falcão PR, Leung H, Ebana K, Yano M, Eizenga G, McClung A, Mezey J.

Nat Commun. 2016 Feb 4;7:10532. doi: 10.1038/ncomms10532. Erratum in: Nat Commun. 2016;7:11346.

30.

Assessing the genetic diversity of rice originating from Bangladesh, Assam and West Bengal.

Travis AJ, Norton GJ, Datta S, Sarma R, Dasgupta T, Savio FL, Macaulay M, Hedley PE, McNally KL, Sumon MH, Islam MR, Price AH.

Rice (N Y). 2015 Dec;8(1):35. doi: 10.1186/s12284-015-0068-z. Epub 2015 Dec 1.

31.

Allele mining and enhanced genetic recombination for rice breeding.

Leung H, Raghavan C, Zhou B, Oliva R, Choi IR, Lacorte V, Jubay ML, Cruz CV, Gregorio G, Singh RK, Ulat VJ, Borja FN, Mauleon R, Alexandrov NN, McNally KL, Sackville Hamilton R.

Rice (N Y). 2015 Dec;8(1):34. doi: 10.1186/s12284-015-0069-y. Epub 2015 Nov 25.

32.

Identification of stable QTLs causing chalk in rice grains in nine environments.

Zhao X, Daygon VD, McNally KL, Hamilton RS, Xie F, Reinke RF, Fitzgerald MA.

Theor Appl Genet. 2016 Jan;129(1):141-53.

PMID:
26498441
33.

Flavivirus Antagonism of Type I Interferon Signaling Reveals Prolidase as a Regulator of IFNAR1 Surface Expression.

Lubick KJ, Robertson SJ, McNally KL, Freedman BA, Rasmussen AL, Taylor RT, Walts AD, Tsuruda S, Sakai M, Ishizuka M, Boer EF, Foster EC, Chiramel AI, Addison CB, Green R, Kastner DL, Katze MG, Holland SM, Forlino A, Freeman AF, Boehm M, Yoshii K, Best SM.

Cell Host Microbe. 2015 Jul 8;18(1):61-74. doi: 10.1016/j.chom.2015.06.007.

34.

Environmental Response and Genomic Regions Correlated with Rice Root Growth and Yield under Drought in the OryzaSNP Panel across Multiple Study Systems.

Wade LJ, Bartolome V, Mauleon R, Vasant VD, Prabakar SM, Chelliah M, Kameoka E, Nagendra K, Reddy KR, Varma CM, Patil KG, Shrestha R, Al-Shugeairy Z, Al-Ogaidi F, Munasinghe M, Gowda V, Semon M, Suralta RR, Shenoy V, Vadez V, Serraj R, Shashidhar HE, Yamauchi A, Babu RC, Price A, McNally KL, Henry A.

PLoS One. 2015 Apr 24;10(4):e0124127. doi: 10.1371/journal.pone.0124127. eCollection 2015.

35.

The asymmetry of female meiosis reduces the frequency of inheritance of unpaired chromosomes.

Cortes DB, McNally KL, Mains PE, McNally FJ.

Elife. 2015 Apr 7;4:e06056. doi: 10.7554/eLife.06056.

36.

SNP-Seek database of SNPs derived from 3000 rice genomes.

Alexandrov N, Tai S, Wang W, Mansueto L, Palis K, Fuentes RR, Ulat VJ, Chebotarov D, Zhang G, Li Z, Mauleon R, Hamilton RS, McNally KL.

Nucleic Acids Res. 2015 Jan;43(Database issue):D1023-7. doi: 10.1093/nar/gku1039. Epub 2014 Nov 27.

37.

Local differentiation amidst extensive allele sharing in Oryza nivara and O. rufipogon.

Banaticla-Hilario MC, van den Berg RG, Hamilton NR, McNally KL.

Ecol Evol. 2013 Sep;3(9):3047-62. doi: 10.1002/ece3.689. Epub 2013 Aug 1.

38.

New allelic variants found in key rice salt-tolerance genes: an association study.

Negrão S, Almadanim MC, Pires IS, Abreu IA, Maroco J, Courtois B, Gregorio GB, McNally KL, Oliveira MM.

Plant Biotechnol J. 2013 Jan;11(1):87-100. doi: 10.1111/pbi.12010. Epub 2012 Nov 1.

39.

Kinesin-1 prevents capture of the oocyte meiotic spindle by the sperm aster.

McNally KL, Fabritius AS, Ellefson ML, Flynn JR, Milan JA, McNally FJ.

Dev Cell. 2012 Apr 17;22(4):788-98. doi: 10.1016/j.devcel.2012.01.010. Epub 2012 Mar 29.

40.

Genomics of gene banks: A case study in rice.

McCouch SR, McNally KL, Wang W, Sackville Hamilton R.

Am J Bot. 2012 Feb;99(2):407-23. doi: 10.3732/ajb.1100385. Epub 2012 Feb 6.

41.

Differential salivary gland transcript expression profile in Ixodes scapularis nymphs upon feeding or flavivirus infection.

McNally KL, Mitzel DN, Anderson JM, Ribeiro JM, Valenzuela JG, Myers TG, Godinez A, Wolfinbarger JB, Best SM, Bloom ME.

Ticks Tick Borne Dis. 2012 Feb;3(1):18-26. doi: 10.1016/j.ttbdis.2011.09.003. Epub 2012 Jan 2.

42.

Genetic variation in biomass traits among 20 diverse rice varieties.

Jahn CE, Mckay JK, Mauleon R, Stephens J, McNally KL, Bush DR, Leung H, Leach JE.

Plant Physiol. 2011 Jan;155(1):157-68. doi: 10.1104/pp.110.165654. Epub 2010 Nov 9.

43.

Migration, isolation and hybridization in island crop populations: the case of Madagascar rice.

Mather KA, Molina J, Flowers JM, Rubinstein S, Rauh BL, Lawton-Rauh A, Caicedo AL, McNally KL, Purugganan MD.

Mol Ecol. 2010 Nov;19(22):4892-905. doi: 10.1111/j.1365-294X.2010.04845.x. Epub 2010 Oct 21.

PMID:
20964753
44.

Structure, allelic diversity and selection of Asr genes, candidate for drought tolerance, in Oryza sativa L. and wild relatives.

Philippe R, Courtois B, McNally KL, Mournet P, El-Malki R, Le Paslier MC, Fabre D, Billot C, Brunel D, Glaszmann JC, This D.

Theor Appl Genet. 2010 Aug;121(4):769-87. doi: 10.1007/s00122-010-1348-z. Epub 2010 May 8.

PMID:
20454772
45.

Kinesin-dependent transport results in polarized migration of the nucleus in oocytes and inward movement of yolk granules in meiotic embryos.

McNally KL, Martin JL, Ellefson M, McNally FJ.

Dev Biol. 2010 Mar 1;339(1):126-40. doi: 10.1016/j.ydbio.2009.12.021. Epub 2009 Dec 28.

46.

Development of a core set from a large rice collection using a modified heuristic algorithm to retain maximum diversity.

Chung HK, Kim KW, Chung JW, Lee JR, Lee SY, Dixit A, Kang HK, Zhao W, McNally KL, Hamilton RS, Gwag JG, Park YJ.

J Integr Plant Biol. 2009 Dec;51(12):1116-25. doi: 10.1111/j.1744-7909.2009.00882.x.

PMID:
20021559
47.

The role of the prion protein membrane anchor in prion infection.

Priola SA, McNally KL.

Prion. 2009 Jul-Sep;3(3):134-8. Epub 2009 Jul 7. Review.

48.

Genomewide SNP variation reveals relationships among landraces and modern varieties of rice.

McNally KL, Childs KL, Bohnert R, Davidson RM, Zhao K, Ulat VJ, Zeller G, Clark RM, Hoen DR, Bureau TE, Stokowski R, Ballinger DG, Frazer KA, Cox DR, Padhukasahasram B, Bustamante CD, Weigel D, Mackill DJ, Bruskiewich RM, Rätsch G, Buell CR, Leung H, Leach JE.

Proc Natl Acad Sci U S A. 2009 Jul 28;106(30):12273-8. doi: 10.1073/pnas.0900992106. Epub 2009 Jul 13.

49.

Human variant Creutzfeldt-Jakob disease and sheep scrapie PrP(res) detection using seeded conversion of recombinant prion protein.

Orrú CD, Wilham JM, Hughson AG, Raymond LD, McNally KL, Bossers A, Ligios C, Caughey B.

Protein Eng Des Sel. 2009 Aug;22(8):515-21. doi: 10.1093/protein/gzp031. Epub 2009 Jul 1.

50.

Cells expressing anchorless prion protein are resistant to scrapie infection.

McNally KL, Ward AE, Priola SA.

J Virol. 2009 May;83(9):4469-75. doi: 10.1128/JVI.02412-08. Epub 2009 Feb 18.

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