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Items: 38

1.

Ancient Polyploidy and Genome Evolution in Palms.

Barrett CF, McKain MR, Sinn BT, Ge XJ, Zhang Y, Antonelli A, Bacon CD.

Genome Biol Evol. 2019 May 1;11(5):1501-1511. doi: 10.1093/gbe/evz092.

2.

Author Correction: Origin and evolution of the octoploid strawberry genome.

Edger PP, Poorten TJ, VanBuren R, Hardigan MA, Colle M, McKain MR, Smith RD, Teresi SJ, Nelson ADL, Wai CM, Alger EI, Bird KA, Yocca AE, Pumplin N, Ou S, Ben-Zvi G, Brodt A, Baruch K, Swale T, Shiue L, Acharya CB, Cole GS, Mower JP, Childs KL, Jiang N, Lyons E, Freeling M, Puzey JR, Knapp SJ.

Nat Genet. 2019 Apr;51(4):765. doi: 10.1038/s41588-019-0380-4.

PMID:
30842601
3.

Origin and evolution of the octoploid strawberry genome.

Edger PP, Poorten TJ, VanBuren R, Hardigan MA, Colle M, McKain MR, Smith RD, Teresi SJ, Nelson ADL, Wai CM, Alger EI, Bird KA, Yocca AE, Pumplin N, Ou S, Ben-Zvi G, Brodt A, Baruch K, Swale T, Shiue L, Acharya CB, Cole GS, Mower JP, Childs KL, Jiang N, Lyons E, Freeling M, Puzey JR, Knapp SJ.

Nat Genet. 2019 Mar;51(3):541-547. doi: 10.1038/s41588-019-0356-4. Epub 2019 Feb 25. Erratum in: Nat Genet. 2019 Apr;51(4):765.

PMID:
30804557
4.

Specimen-based analysis of morphology and the environment in ecologically dominant grasses: the power of the herbarium.

McAllister CA, McKain MR, Li M, Bookout B, Kellogg EA.

Philos Trans R Soc Lond B Biol Sci. 2018 Nov 19;374(1763). pii: 20170403. doi: 10.1098/rstb.2017.0403.

PMID:
30455217
5.

Practical considerations for plant phylogenomics.

McKain MR, Johnson MG, Uribe-Convers S, Eaton D, Yang Y.

Appl Plant Sci. 2018 Apr 2;6(3):e1038. doi: 10.1002/aps3.1038. eCollection 2018 Mar. Review.

6.

Subgenome assignment in allopolyploids: challenges and future directions.

Edger PP, McKain MR, Bird KA, VanBuren R.

Curr Opin Plant Biol. 2018 Apr;42:76-80. doi: 10.1016/j.pbi.2018.03.006. Epub 2018 Apr 9. Review.

PMID:
29649616
7.

Phylotranscriptomic analysis and genome evolution of the Cypripedioideae (Orchidaceae).

Unruh SA, McKain MR, Lee YI, Yukawa T, McCormick MK, Shefferson RP, Smithson A, Leebens-Mack JH, Pires JC.

Am J Bot. 2018 Apr;105(4):631-640. doi: 10.1002/ajb2.1047. Epub 2018 Apr 2. Erratum in: Am J Bot. 2018 May;105(5):957.

8.

Robust DNA Isolation and High-throughput Sequencing Library Construction for Herbarium Specimens.

Saeidi S, McKain MR, Kellogg EA.

J Vis Exp. 2018 Mar 8;(133). doi: 10.3791/56837.

PMID:
29578505
9.

Single-molecule sequencing and optical mapping yields an improved genome of woodland strawberry (Fragaria vesca) with chromosome-scale contiguity.

Edger PP, VanBuren R, Colle M, Poorten TJ, Wai CM, Niederhuth CE, Alger EI, Ou S, Acharya CB, Wang J, Callow P, McKain MR, Shi J, Collier C, Xiong Z, Mower JP, Slovin JP, Hytönen T, Jiang N, Childs KL, Knapp SJ.

Gigascience. 2018 Feb 1;7(2):1-7. doi: 10.1093/gigascience/gix124.

10.

The asparagus genome sheds light on the origin and evolution of a young Y chromosome.

Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y, Luo S, Chen H, Gao J, Mao Z, Pires JC, Luo M, Kudrna D, Wing RA, Meyers BC, Yi K, Kong H, Lavrijsen P, Sunseri F, Falavigna A, Ye Y, Leebens-Mack JH, Chen G.

Nat Commun. 2017 Nov 2;8(1):1279. doi: 10.1038/s41467-017-01064-8.

11.

Subgenome Dominance in an Interspecific Hybrid, Synthetic Allopolyploid, and a 140-Year-Old Naturally Established Neo-Allopolyploid Monkeyflower.

Edger PP, Smith R, McKain MR, Cooley AM, Vallejo-Marin M, Yuan Y, Bewick AJ, Ji L, Platts AE, Bowman MJ, Childs KL, Washburn JD, Schmitz RJ, Smith GD, Pires JC, Puzey JR.

Plant Cell. 2017 Sep;29(9):2150-2167. doi: 10.1105/tpc.17.00010. Epub 2017 Aug 16.

12.

Polyphyly of Arundinoideae (Poaceae) and evolution of the twisted geniculate lemma awn.

Teisher JK, McKain MR, Schaal BA, Kellogg EA.

Ann Bot. 2017 Nov 10;120(5):725-738. doi: 10.1093/aob/mcx058.

13.

Drosophila melanogaster retrotransposon and inverted repeat-derived endogenous siRNAs are differentially processed in distinct cellular locations.

Harrington AW, McKain MR, Michalski D, Bauer KM, Daugherty JM, Steiniger M.

BMC Genomics. 2017 Apr 17;18(1):304. doi: 10.1186/s12864-017-3692-8.

14.

Timing of rapid diversification and convergent origins of active pollination within Agavoideae (Asparagaceae).

McKain MR, McNeal JR, Kellar PR, Eguiarte LE, Pires JC, Leebens-Mack J.

Am J Bot. 2016 Oct;103(10):1717-1729. Epub 2016 Oct 20.

15.

The draft genome of the C3 panicoid grass species Dichanthelium oligosanthes.

Studer AJ, Schnable JC, Weissmann S, Kolbe AR, McKain MR, Shao Y, Cousins AB, Kellogg EA, Brutnell TP.

Genome Biol. 2016 Oct 28;17(1):223.

16.

Verdant: automated annotation, alignment and phylogenetic analysis of whole chloroplast genomes.

McKain MR, Hartsock RH, Wohl MM, Kellogg EA.

Bioinformatics. 2017 Jan 1;33(1):130-132. doi: 10.1093/bioinformatics/btw583. Epub 2016 Sep 14.

17.

Gα and regulator of G-protein signaling (RGS) protein pairs maintain functional compatibility and conserved interaction interfaces throughout evolution despite frequent loss of RGS proteins in plants.

Hackenberg D, McKain MR, Lee SG, Roy Choudhury S, McCann T, Schreier S, Harkess A, Pires JC, Wong GK, Jez JM, Kellogg EA, Pandey S.

New Phytol. 2017 Oct;216(2):562-575. doi: 10.1111/nph.14180. Epub 2016 Sep 16. Erratum in: New Phytol. 2018 Jan;217(2):960.

18.

Evolution of a CAM anatomy predates the origins of Crassulacean acid metabolism in the Agavoideae (Asparagaceae).

Heyduk K, McKain MR, Lalani F, Leebens-Mack J.

Mol Phylogenet Evol. 2016 Dec;105:102-113. doi: 10.1016/j.ympev.2016.08.018. Epub 2016 Aug 30.

PMID:
27591171
19.

Retrotransposon Proliferation Coincident with the Evolution of Dioecy in Asparagus.

Harkess A, Mercati F, Abbate L, McKain M, Pires JC, Sala T, Sunseri F, Falavigna A, Leebens-Mack J.

G3 (Bethesda). 2016 Sep 8;6(9):2679-85. doi: 10.1534/g3.116.030239.

20.

Strongly asymmetric hybridization barriers shape the origin of a new polyploid species and its hybrid ancestor.

Vallejo-Marín M, Cooley AM, Lee MY, Folmer M, McKain MR, Puzey JR.

Am J Bot. 2016 Jul;103(7):1272-88. doi: 10.3732/ajb.1500471. Epub 2016 May 24.

21.

A Phylogenomic Assessment of Ancient Polyploidy and Genome Evolution across the Poales.

McKain MR, Tang H, McNeal JR, Ayyampalayam S, Davis JI, dePamphilis CW, Givnish TJ, Pires JC, Stevenson DW, Leebens-Mack JH.

Genome Biol Evol. 2016 Apr 21;8(4):1150-64. doi: 10.1093/gbe/evw060.

22.

Multilocus phylogeny and phylogenomics of Eriochrysis P. Beauv. (Poaceae-Andropogoneae): Taxonomic implications and evidence of interspecific hybridization.

Welker CAD, Souza-Chies TT, Longhi-Wagner HM, Peichoto MC, McKain MR, Kellogg EA.

Mol Phylogenet Evol. 2016 Jun;99:155-167. doi: 10.1016/j.ympev.2016.02.022. Epub 2016 Mar 3.

PMID:
26947710
23.

Patient-Centered Pharmacy Services: A Descriptive Report.

McKain M, O'Neil CK.

Consult Pharm. 2015 Nov;30(11):664-70. doi: 10.4140/TCP.n.2015.664.

PMID:
26629802
24.

The pineapple genome and the evolution of CAM photosynthesis.

Ming R, VanBuren R, Wai CM, Tang H, Schatz MC, Bowers JE, Lyons E, Wang ML, Chen J, Biggers E, Zhang J, Huang L, Zhang L, Miao W, Zhang J, Ye Z, Miao C, Lin Z, Wang H, Zhou H, Yim WC, Priest HD, Zheng C, Woodhouse M, Edger PP, Guyot R, Guo HB, Guo H, Zheng G, Singh R, Sharma A, Min X, Zheng Y, Lee H, Gurtowski J, Sedlazeck FJ, Harkess A, McKain MR, Liao Z, Fang J, Liu J, Zhang X, Zhang Q, Hu W, Qin Y, Wang K, Chen LY, Shirley N, Lin YR, Liu LY, Hernandez AG, Wright CL, Bulone V, Tuskan GA, Heath K, Zee F, Moore PH, Sunkar R, Leebens-Mack JH, Mockler T, Bennetzen JL, Freeling M, Sankoff D, Paterson AH, Zhu X, Yang X, Smith JA, Cushman JC, Paull RE, Yu Q.

Nat Genet. 2015 Dec;47(12):1435-42. doi: 10.1038/ng.3435. Epub 2015 Nov 2.

25.

Elucidating steroid alkaloid biosynthesis in Veratrum californicum: production of verazine in Sf9 cells.

Augustin MM, Ruzicka DR, Shukla AK, Augustin JM, Starks CM, O'Neil-Johnson M, McKain MR, Evans BS, Barrett MD, Smithson A, Wong GK, Deyholos MK, Edger PP, Pires JC, Leebens-Mack JH, Mann DA, Kutchan TM.

Plant J. 2015 Jun;82(6):991-1003. doi: 10.1111/tpj.12871.

26.

Dissecting the molecular signatures of apical cell-type shoot meristems from two ancient land plant lineages.

Frank MH, Edwards MB, Schultz ER, McKain MR, Fei Z, Sørensen I, Rose JK, Scanlon MJ.

New Phytol. 2015 Aug;207(3):893-904. doi: 10.1111/nph.13407. Epub 2015 Apr 21.

27.

Phylogenetic analysis of Saccharum s.l. (Poaceae; Andropogoneae), with emphasis on the circumscription of the South American species.

Welker CA, Souza-Chies TT, Longhi-Wagner HM, Peichoto MC, McKain MR, Kellogg EA.

Am J Bot. 2015 Feb;102(2):248-63. doi: 10.3732/ajb.1400397. Epub 2015 Feb 5.

28.

Multiple polyploidy events in the early radiation of nodulating and nonnodulating legumes.

Cannon SB, McKain MR, Harkess A, Nelson MN, Dash S, Deyholos MK, Peng Y, Joyce B, Stewart CN Jr, Rolf M, Kutchan T, Tan X, Chen C, Zhang Y, Carpenter E, Wong GK, Doyle JJ, Leebens-Mack J.

Mol Biol Evol. 2015 Jan;32(1):193-210. doi: 10.1093/molbev/msu296. Epub 2014 Oct 27.

29.

Allopolyploidy, diversification, and the Miocene grassland expansion.

Estep MC, McKain MR, Vela Diaz D, Zhong J, Hodge JG, Hodkinson TR, Layton DJ, Malcomber ST, Pasquet R, Kellogg EA.

Proc Natl Acad Sci U S A. 2014 Oct 21;111(42):15149-54. doi: 10.1073/pnas.1404177111. Epub 2014 Oct 6. Erratum in: Proc Natl Acad Sci U S A. 2016 Jan 12;113(2):E257.

30.

Diversification times among Brassica (Brassicaceae) crops suggest hybrid formation after 20 million years of divergence.

Arias T, Beilstein MA, Tang M, McKain MR, Pires JC.

Am J Bot. 2014 Jan;101(1):86-91. doi: 10.3732/ajb.1300312. Epub 2014 Jan 3.

31.

The banana (Musa acuminata) genome and the evolution of monocotyledonous plants.

D'Hont A, Denoeud F, Aury JM, Baurens FC, Carreel F, Garsmeur O, Noel B, Bocs S, Droc G, Rouard M, Da Silva C, Jabbari K, Cardi C, Poulain J, Souquet M, Labadie K, Jourda C, Lengellé J, Rodier-Goud M, Alberti A, Bernard M, Correa M, Ayyampalayam S, Mckain MR, Leebens-Mack J, Burgess D, Freeling M, Mbéguié-A-Mbéguié D, Chabannes M, Wicker T, Panaud O, Barbosa J, Hribova E, Heslop-Harrison P, Habas R, Rivallan R, Francois P, Poiron C, Kilian A, Burthia D, Jenny C, Bakry F, Brown S, Guignon V, Kema G, Dita M, Waalwijk C, Joseph S, Dievart A, Jaillon O, Leclercq J, Argout X, Lyons E, Almeida A, Jeridi M, Dolezel J, Roux N, Risterucci AM, Weissenbach J, Ruiz M, Glaszmann JC, Quétier F, Yahiaoui N, Wincker P.

Nature. 2012 Aug 9;488(7410):213-7. doi: 10.1038/nature11241.

PMID:
22801500
32.

Phylogenomic analysis of transcriptome data elucidates co-occurrence of a paleopolyploid event and the origin of bimodal karyotypes in Agavoideae (Asparagaceae).

McKain MR, Wickett N, Zhang Y, Ayyampalayam S, McCombie WR, Chase MW, Pires JC, dePamphilis CW, Leebens-Mack J.

Am J Bot. 2012 Feb;99(2):397-406. doi: 10.3732/ajb.1100537. Epub 2012 Feb 1.

33.

Quality and quantity of data recovered from massively parallel sequencing: Examples in Asparagales and Poaceae.

Steele PR, Hertweck KL, Mayfield D, McKain MR, Leebens-Mack J, Pires JC.

Am J Bot. 2012 Feb;99(2):330-48. doi: 10.3732/ajb.1100491. Epub 2012 Jan 30.

34.

A genome triplication associated with early diversification of the core eudicots.

Jiao Y, Leebens-Mack J, Ayyampalayam S, Bowers JE, McKain MR, McNeal J, Rolf M, Ruzicka DR, Wafula E, Wickett NJ, Wu X, Zhang Y, Wang J, Zhang Y, Carpenter EJ, Deyholos MK, Kutchan TM, Chanderbali AS, Soltis PS, Stevenson DW, McCombie R, Pires JC, Wong GK, Soltis DE, Depamphilis CW.

Genome Biol. 2012 Jan 26;13(1):R3. doi: 10.1186/gb-2012-13-1-r3.

35.

The influence of competitive flow on graft patency.

Juleff RS, Brown OW, McKain MM, Glover JL, Bendick PJ.

J Cardiovasc Surg (Torino). 1992 Jul-Aug;33(4):415-9.

PMID:
1388175
36.

Comparison of immediate seeding of endothelial cells with culture lining of small diameter ePTFE carotid interposition grafts.

Hussain SM, Long GW, Juleff RS, McKain M, Glover JL, Bendick PJ, Townsend LE.

J Surg Res. 1991 Jul;51(1):33-9.

PMID:
2067356
37.

Effect of SMS201-995 (a long-acting somatostatin analog) on bile-induced acute hemorrhagic pancreatitis in the dog.

Augelli NV, Hussain SM, McKain MM, Fietsam R, Bierema T, Fegley M, Bendick P, Villalba M, Lucas R, Glover JL.

Am Surg. 1989 Jun;55(6):389-91.

PMID:
2729778
38.

Host response to autologous endothelial seeding.

Hussain S, Glover JL, Augelli N, Bendick PJ, Maupin D, McKain M.

J Vasc Surg. 1989 May;9(5):656-63; discussion 663-4.

PMID:
2524604

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