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Evaluation of Knee Cartilage Diurnal, Activity, and BMI-Related Variations Using Quantitative T2 Mapping MRI and Fitbit Activity Tracking.

Matcuk GR Jr, Jones IA, McIntyre JA, Burt R, Hwang D, Cen S, Schein AJ, Vangsness CT Jr.

J Knee Surg. 2019 Aug 21. doi: 10.1055/s-0039-1695000. [Epub ahead of print]


'My Tablets are on Top of the Fridge': The Roles of Relationship Desire and Medical Mistrust in ART Adherence for HIV-Positive MSM and Transgender Women Living in Rural South Africa.

Daniels J, Struthers H, Maleke K, Lane T, McIntyre J, Coates T.

AIDS Behav. 2019 Aug 12. doi: 10.1007/s10461-019-02628-z. [Epub ahead of print]


Baseline CD4 and mortality trends in the South African human immunodeficiency virus programme: Analysis of routine data.

Lilian RR, Rees K, Mabitsi M, McIntyre JA, Struthers HE, Peters RPH.

South Afr J HIV Med. 2019 Jul 24;20(1):963. doi: 10.4102/sajhivmed.v20i1.963. eCollection 2019.


Time to viral rebound and safety after antiretroviral treatment interruption in postpartum women compared to men.

Le CN, Britto P, Brummel SS, Hoffman RM, Li JZ, Flynn PM, Taha TE, Coletti A, Fowler MG, Bosch RJ, Gandhi RT, Klingman KL, Mcintyre JA, Currier JS.

AIDS. 2019 Aug 1. doi: 10.1097/QAD.0000000000002334. [Epub ahead of print]


Public involvement in the dissemination of the North West Coast Household Health Survey: Experiences and lessons of co-producing research together.

Giebel C, Hassan S, McIntyre JC, Corcoran R, Barr B, Gabbay M, Downing J, Comerford T, Alfirevic A.

Health Expect. 2019 Jul 29. doi: 10.1111/hex.12940. [Epub ahead of print]


Raman spectroscopy as a potential tool for label free therapeutic drug monitoring in human serum: the case of busulfan and methotrexate.

Parachalil DR, Commerford D, Bonnier F, Chourpa I, McIntyre J, Byrne HJ.

Analyst. 2019 Aug 16;144(17):5207-5214. doi: 10.1039/c9an00801b.


MYB-NFIB gene fusions identified in archival adenoid cystic carcinoma tissue employing NanoString analysis: an exploratory study.

McIntyre JB, Ko JJ, Siever J, Chan AMY, Simpson RHW, Hao D, Lau HY.

Diagn Pathol. 2019 Jul 13;14(1):78. doi: 10.1186/s13000-019-0855-8.


An urban stormwater runoff mortality syndrome in juvenile coho salmon.

Chow MI, Lundin JI, Mitchell CJ, Davis JW, Young G, Scholz NL, McIntyre JK.

Aquat Toxicol. 2019 Jun 20;214:105231. doi: 10.1016/j.aquatox.2019.105231. [Epub ahead of print]


Risk Factors for Adverse Birth Outcomes in the PROMISE 1077BF/1077FF Trial.

Sebikari D, Farhad M, Fenton T, Owor M, Stringer JSA, Qin M, Chakhtoura N, Chi BH, Saidi F, Nevrekar N, Violari A, Chipato T, McIntyre JA, Moodley D, Taha TE, Theron G, Fowler MG.

J Acquir Immune Defic Syndr. 2019 Aug 15;81(5):521-532. doi: 10.1097/QAI.0000000000002072.


High rate of repeat sexually transmitted diseases among men who have sex with men in South Africa: a prospective cohort study.

van Liere G, Kock MM, Radebe O, Struthers HE, Morre S, McIntyre JA, Peters RPH.

Sex Transm Dis. 2019 Jul 1. doi: 10.1097/OLQ.0000000000001041. [Epub ahead of print]


Strategies to improve access for MSM in low-income and middle-income countries.

Rebe K, Hoosen N, McIntyre JA.

Curr Opin HIV AIDS. 2019 Sep;14(5):387-392. doi: 10.1097/COH.0000000000000568.


Raman spectroscopic screening of high and low molecular weight fractions of human serum.

Parachalil DR, Bruno C, Bonnier F, Blasco H, Chourpa I, McIntyre J, Byrne HJ.

Analyst. 2019 Jul 21;144(14):4295-4311. doi: 10.1039/c9an00599d. Epub 2019 Jun 12.


Community-based strategies to identify the unmet need for care of individuals with sexually transmitted infection-associated symptoms in rural South Africa.

Hoffman CM, Fritz L, Matlakala N, Mbambazela N, Railton JP, McIntyre JA, Dubbink JH, Peters RPH.

Trop Med Int Health. 2019 Aug;24(8):987-993. doi: 10.1111/tmi.13274. Epub 2019 Jun 13.


Refugia and anthelmintic resistance: Concepts and challenges.

Hodgkinson JE, Kaplan RM, Kenyon F, Morgan ER, Park AW, Paterson S, Babayan SA, Beesley NJ, Britton C, Chaudhry U, Doyle SR, Ezenwa VO, Fenton A, Howell SB, Laing R, Mable BK, Matthews L, McIntyre J, Milne CE, Morrison TA, Prentice JC, Sargison ND, Williams DJL, Wolstenholme AJ, Devaney E.

Int J Parasitol Drugs Drug Resist. 2019 May 17;10:51-57. doi: 10.1016/j.ijpddr.2019.05.001. [Epub ahead of print] Review.


HIV self-screening distribution preferences and experiences among men who have sex with men in Mpumalanga Province: Informing policy for South Africa.

Radebe O, Lippman SA, Lane T, Gilmore H, Agnew E, Manyuchi A, McIntyre JA.

S Afr Med J. 2019 Mar 29;109(4):227-231. doi: 10.7196/SAMJ.2019.v109i4.13818.


Analysis of bodily fluids using vibrational spectroscopy: a direct comparison of Raman scattering and infrared absorption techniques for the case of glucose in blood serum.

Parachalil DR, Bruno C, Bonnier F, Blasco H, Chourpa I, Baker MJ, McIntyre J, Byrne HJ.

Analyst. 2019 May 13;144(10):3334-3346. doi: 10.1039/c9an00125e.


Feed supplementation with biochar may reduce poultry pathogens, including Campylobacter hepaticus, the causative agent of Spotty Liver Disease.

Willson NL, Van TTH, Bhattarai SP, Courtice JM, McIntyre JR, Prasai TP, Moore RJ, Walsh K, Stanley D.

PLoS One. 2019 Apr 3;14(4):e0214471. doi: 10.1371/journal.pone.0214471. eCollection 2019.


Maternal health outcomes among HIV-infected breastfeeding women with high CD4 counts: results of a treatment strategy trial.

Hoffman RM, Angelidou KN, Brummel SS, Saidi F, Violari A, Dula D, Mave V, Fairlie L, Theron G, Kamateeka M, Chipato T, Chi BH, Stranix-Chibanda L, Nematadzira T, Moodley D, Bhattacharya D, Gupta A, Coletti A, McIntyre JA, Klingman KL, Chakhtoura N, Shapiro DE, Fowler MG, Currier JS; IMPAACT PROMISE 1077BF/FF team.

HIV Clin Trials. 2018 Dec;19(6):209-224. doi: 10.1080/15284336.2018.1537327.


DNA polymerase ι is acetylated in response to SN2 alkylating agents.

McIntyre J, Sobolewska A, Fedorowicz M, McLenigan MP, Macias M, Woodgate R, Sledziewska-Gojska E.

Sci Rep. 2019 Mar 18;9(1):4789. doi: 10.1038/s41598-019-41249-3.


Antiretroviral adherence, elevated viral load and drug resistant mutations in HIV-infected women initiating treatment in pregnancy: a nested case-control study.

Myer L, Redd AD, Mukonda E, Lynch BA, Phillips TK, Eisenberg A, Hsiao NY, Capoferri A, Zerbe A, Clarke W, Lesosky M, Breaud A, McIntyre J, Bruno D, Martens C, Abrams EJ, Reynolds SJ.

Clin Infect Dis. 2019 Mar 16. pii: ciz209. doi: 10.1093/cid/ciz209. [Epub ahead of print]


Targeted mentoring for human immunodeficiency virus programme support in South Africa.

Jobson G, Mabitsi M, Railton J, Grobbelaar CJ, McIntyre JA, Struthers HE, Peters RPH.

South Afr J HIV Med. 2019 Feb 14;20(1):873. doi: 10.4102/sajhivmed.v20i1.873. eCollection 2019.


A child with perinatal HIV infection and long-term sustained virological control following antiretroviral treatment cessation.

Violari A, Cotton MF, Kuhn L, Schramm DB, Paximadis M, Loubser S, Shalekoff S, Da Costa Dias B, Otwombe K, Liberty A, McIntyre J, Babiker A, Gibb D, Tiemessen CT.

Nat Commun. 2019 Jan 24;10(1):412. doi: 10.1038/s41467-019-08311-0.


Provision of HIV services by community health workers should be strengthened to achieve full programme potential: a cross-sectional analysis in rural South Africa.

Naidoo N, Matlakala N, Railton J, Khosa S, Marincowitz G, Igumbor JO, McIntyre JA, Struthers HE, Peters RPH.

Trop Med Int Health. 2019 Apr;24(4):401-408. doi: 10.1111/tmi.13204. Epub 2019 Feb 3.


Graphene Nanoflake Uptake Mediated by Scavenger Receptors.

Alnasser F, Castagnola V, Boselli L, Esquivel-Gaon M, Efeoglu E, McIntyre J, Byrne HJ, Dawson KA.

Nano Lett. 2019 Feb 13;19(2):1260-1268. doi: 10.1021/acs.nanolett.8b04820. Epub 2019 Jan 16.


What are the social predictors of accident and emergency attendance in disadvantaged neighbourhoods? Results from a cross-sectional household health survey in the north west of England.

Giebel C, McIntyre JC, Daras K, Gabbay M, Downing J, Pirmohamed M, Walker F, Sawicki W, Alfirevic A, Barr B.

BMJ Open. 2019 Jan 6;9(1):e022820. doi: 10.1136/bmjopen-2018-022820.


Comparison of an in-house real-time duplex PCR assay with commercial HOLOGIC® APTIMA assays for the detection of Neisseria gonorrhoeae and Chlamydia trachomatis in urine and extra-genital specimens.

Venter JME, Mahlangu PM, Müller EE, Lewis DA, Rebe K, Struthers H, McIntyre J, Kularatne RS.

BMC Infect Dis. 2019 Jan 3;19(1):6. doi: 10.1186/s12879-018-3629-0.


A somatic activating NRAS variant associated with kaposiform lymphangiomatosis.

Barclay SF, Inman KW, Luks VL, McIntyre JB, Al-Ibraheemi A, Church AJ, Perez-Atayde AR, Mangray S, Jeng M, Kreimer SR, Walker L, Fishman SJ, Alomari AI, Chaudry G, Trenor Iii CC, Adams D, Kozakewich HPW, Kurek KC.

Genet Med. 2019 Jul;21(7):1517-1524. doi: 10.1038/s41436-018-0390-0. Epub 2018 Dec 13.


Combatting the Opioid Crisis From Prison: Initiating Opioid Agonist Therapy.

McIntyre JL.

J Forensic Nurs. 2018 Oct/Dec;14(4):248-252. doi: 10.1097/JFN.0000000000000221.


Ability to use oral fluid and fingerstick HIV self-testing (HIVST) among South African MSM.

Lippman SA, Gilmore HJ, Lane T, Radebe O, Chen YH, Mlotshwa N, Maleke K, Manyuchi AE, McIntyre J.

PLoS One. 2018 Nov 8;13(11):e0206849. doi: 10.1371/journal.pone.0206849. eCollection 2018.


Provision of Sexually Transmitted Infection Services in a Mobile Clinic Reveals High Unmet Need in Remote Areas of South Africa: A Cross-sectional Study.

Hoffman CM, Mbambazela N, Sithole P, Morré SA, Dubbink JH, Railton J, McIntyre JA, Kock MM, Peters RPH.

Sex Transm Dis. 2019 Mar;46(3):206-212. doi: 10.1097/OLQ.0000000000000931.


Raman spectroscopic analysis of high molecular weight proteins in solution - considerations for sample analysis and data pre-processing.

Parachalil DR, Brankin B, McIntyre J, Byrne HJ.

Analyst. 2018 Dec 3;143(24):5987-5998. doi: 10.1039/c8an01701h.


Sexual Behaviors of Human Immunodeficiency Virus-Infected Pregnant Women and Factors Associated With Sexually Transmitted Infection in South Africa.

Joseph Davey D, Peters RPH, Kojima N, Mudau M, De Vos L, Olivier D, McIntyre JA, Klausner JD, Medina-Marino A.

Sex Transm Dis. 2018 Nov;45(11):754-761. doi: 10.1097/OLQ.0000000000000847.


Using High-Resolution Mass Spectrometry to Identify Organic Contaminants Linked to Urban Stormwater Mortality Syndrome in Coho Salmon.

Peter KT, Tian Z, Wu C, Lin P, White S, Du B, McIntyre JK, Scholz NL, Kolodziej EP.

Environ Sci Technol. 2018 Sep 18;52(18):10317-10327. doi: 10.1021/acs.est.8b03287. Epub 2018 Sep 7.


Fidelity of HIV programme implementation by community health workers in rural Mopani district, South Africa: a community survey.

Naidoo N, Railton JP, Khosa SN, Matlakala N, Marincowitz G, McIntyre JA, Struthers HE, Igumbor J, Peters RPH.

BMC Public Health. 2018 Sep 6;18(1):1099. doi: 10.1186/s12889-018-5927-2.


Understanding health worker data use in a South African antiretroviral therapy register.

Jobson G, Murphy J, van Huyssteen M, Myburgh H, Hurter T, Grobbelaar CJ, Struthers HE, McIntyre JA, Peters RPH.

Trop Med Int Health. 2018 Nov;23(11):1207-1212. doi: 10.1111/tmi.13146. Epub 2018 Sep 19.


Qualitative assessment of facilitators and barriers to HIV programme implementation by community health workers in Mopani district, South Africa.

Naidoo N, Zuma N, Khosa NS, Marincowitz G, Railton J, Matlakala N, Jobson GA, Igumbor JO, McIntyre JA, Struthers HE, Peters RPH.

PLoS One. 2018 Aug 30;13(8):e0203081. doi: 10.1371/journal.pone.0203081. eCollection 2018.


Advancing Raman microspectroscopy for cellular and subcellular analysis: towards in vitro high-content spectralomic analysis.

Byrne HJ, Bonnier F, Casey A, Maher M, McIntyre J, Efeoglu E, Farhane Z.

Appl Opt. 2018 Aug 1;57(22):E11-E19. doi: 10.1364/AO.57.000E11.


Rectal Trichomonas vaginalis infection in South African men who have sex with men.

Hoffman CM, Fritz L, Radebe O, Dubbink JH, McIntyre JA, Kock MM, Peters RP.

Int J STD AIDS. 2018 Aug 16:956462418788418. doi: 10.1177/0956462418788418. [Epub ahead of print]


Hidden in plain sight - Multiple resistant species within a strongyle community.

McIntyre J, Hamer K, Morrison AA, Bartley DJ, Sargison N, Devaney E, Laing R.

Vet Parasitol. 2018 Jul 15;258:79-87. doi: 10.1016/j.vetpar.2018.06.012. Epub 2018 Jun 11.


Estimating the Population Size of Female Sex Workers in Three South African Cities: Results and Recommendations From the 2013-2014 South Africa Health Monitoring Survey and Stakeholder Consensus.

Grasso MA, Manyuchi AE, Sibanyoni M, Marr A, Osmand T, Isdahl Z, Struthers H, McIntyre JA, Venter F, Rees HV, Lane T.

JMIR Public Health Surveill. 2018 Aug 7;4(3):e10188. doi: 10.2196/10188.


Effect of a 12-month exercise intervention on leukocyte telomere length: Results from the ALPHA Trial.

Friedenreich CM, Wang Q, Ting NS, Brenner DR, Conroy SM, McIntyre JB, Mickle A, Courneya KS, Beattie T.

Cancer Epidemiol. 2018 Oct;56:67-74. doi: 10.1016/j.canep.2018.07.012. Epub 2018 Jul 31.


Bendamustine, pomalidomide, and dexamethasone for relapsed and/or refractory multiple myeloma.

Sivaraj D, Green MM, Kang Y, Long GD, Rizzieri DA, Li Z, Garrett AH, McIntyre JL, Chao NJ, Gasparetto C.

Blood Cancer J. 2018 Jul 31;8(8):71. doi: 10.1038/s41408-018-0104-5. No abstract available.


Peripheral Gene Therapeutic Rescue of an Olfactory Ciliopathy Restores Sensory Input, Axonal Pathfinding, and Odor-Guided Behavior.

Green WW, Uytingco CR, Ukhanov K, Kolb Z, Moretta J, McIntyre JC, Martens JR.

J Neurosci. 2018 Aug 22;38(34):7462-7475. doi: 10.1523/JNEUROSCI.0084-18.2018. Epub 2018 Jul 30.


Endoscopic surgery for nonsyndromic craniosynostosis: a 16-year single-center experience.

Dalle Ore CL, Dilip M, Brandel MG, McIntyre JK, Hoshide R, Calayag M, Gosman AA, Cohen SR, Meltzer HS.

J Neurosurg Pediatr. 2018 Oct;22(4):335-343. doi: 10.3171/2018.2.PEDS17364. Epub 2018 Jul 6.


Aerobic exercise and DNA methylation in postmenopausal women: An ancillary analysis of the Alberta Physical Activity and Breast Cancer Prevention (ALPHA) Trial.

Boyne DJ, King WD, Brenner DR, McIntyre JB, Courneya KS, Friedenreich CM.

PLoS One. 2018 Jun 28;13(6):e0198641. doi: 10.1371/journal.pone.0198641. eCollection 2018.


Burden of tuberculosis in HIV-positive pregnant women in Cape Town, South Africa.

Odayar J, Rangaka MX, Zerbe A, Petro G, McIntyre JA, Phillips TK, Abrams EJ, Myer L.

Int J Tuberc Lung Dis. 2018 Jul 1;22(7):760-765. doi: 10.5588/ijtld.17.0448.


Childhood maltreatment and problematic social media use: The role of attachment and depression.

Worsley JD, McIntyre JC, Bentall RP, Corcoran R.

Psychiatry Res. 2018 Sep;267:88-93. doi: 10.1016/j.psychres.2018.05.023. Epub 2018 May 25.


Acceptability and Feasibility of Integrating Point-of-Care Diagnostic Testing of Sexually Transmitted Infections into a South African Antenatal Care Program for HIV-Infected Pregnant Women.

Morikawa E, Mudau M, Olivier D, de Vos L, Joseph Davey D, Price C, McIntyre JA, Peters RP, Klausner JD, Medina-Marino A.

Infect Dis Obstet Gynecol. 2018 May 9;2018:3946862. doi: 10.1155/2018/3946862. eCollection 2018.


"Booze is the main factor that got me where I am today": alcohol use and HIV risk for MSM in rural South Africa.

Daniels J, Struthers H, Lane T, Maleke K, McIntyre J, Coates T.

AIDS Care. 2018 Nov;30(11):1452-1458. doi: 10.1080/09540121.2018.1475626. Epub 2018 May 28.


Strengthening primary eye care in South Africa: An assessment of services and prospective evaluation of a health systems support package.

Lilian RR, Railton J, Schaftenaar E, Mabitsi M, Grobbelaar CJ, Khosa NS, Maluleke BH, Struthers HE, McIntyre JA, Peters RPH.

PLoS One. 2018 May 14;13(5):e0197432. doi: 10.1371/journal.pone.0197432. eCollection 2018.

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