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Items: 34

1.

The novel use of pop-off satellite tags (PSATs) to investigate the migratory behaviour of European sea bass Dicentrarchus labrax.

O'Neill R, Ó Maoiléidigh N, McGinnity P, Bond N, Culloty S.

J Fish Biol. 2018 May;92(5):1404-1421. doi: 10.1111/jfb.13594. Epub 2018 Apr 1.

PMID:
29607514
2.

Genetic fingerprinting of salmon louse (Lepeophtheirus salmonis) populations in the North-East Atlantic using a random forest classification approach.

Jacobs A, De Noia M, Praebel K, Kanstad-Hanssen Ø, Paterno M, Jackson D, McGinnity P, Sturm A, Elmer KR, Llewellyn MS.

Sci Rep. 2018 Jan 19;8(1):1203. doi: 10.1038/s41598-018-19323-z.

3.

Recent evolution of 129I levels in the Nordic Seas and the North Atlantic Ocean.

Vivo-Vilches C, López-Gutiérrez JM, Periáñez R, Marcinko C, Le Moigne F, McGinnity P, Peruchena JI, Villa-Alfageme M.

Sci Total Environ. 2018 Apr 15;621:376-386. doi: 10.1016/j.scitotenv.2017.11.268. Epub 2017 Dec 1.

PMID:
29202284
4.

Functional Annotation of All Salmonid Genomes (FAASG): an international initiative supporting future salmonid research, conservation and aquaculture.

Macqueen DJ, Primmer CR, Houston RD, Nowak BF, Bernatchez L, Bergseth S, Davidson WS, Gallardo-Escárate C, Goldammer T, Guiguen Y, Iturra P, Kijas JW, Koop BF, Lien S, Maass A, Martin SAM, McGinnity P, Montecino M, Naish KA, Nichols KM, Ólafsson K, Omholt SW, Palti Y, Plastow GS, Rexroad CE Rd, Rise ML, Ritchie RJ, Sandve SR, Schulte PM, Tello A, Vidal R, Vik JO, Wargelius A, Yáñez JM; FAASG Consortium.

BMC Genomics. 2017 Jun 27;18(1):484. doi: 10.1186/s12864-017-3862-8.

5.

A critique of claims for negative impacts of Marine Protected Areas on fisheries.

Hughes TP, Cameron DS, Chin A, Connolly SR, Day JC, Jones GP, McCook L, McGinnity P, Mumby PJ, Pears RJ, Pressey RL, Russ GR, Tanzer J, Tobin A, Young MA.

Ecol Appl. 2016 Mar;26(2):637-41. No abstract available.

PMID:
27209801
6.

A novel method of microsatellite genotyping-by-sequencing using individual combinatorial barcoding.

Vartia S, Villanueva-Cañas JL, Finarelli J, Farrell ED, Collins PC, Hughes GM, Carlsson JE, Gauthier DT, McGinnity P, Cross TF, FitzGerald RD, Mirimin L, Crispie F, Cotter PD, Carlsson J.

R Soc Open Sci. 2016 Jan 20;3(1):150565. doi: 10.1098/rsos.150565. eCollection 2016 Jan.

7.

The biogeography of the atlantic salmon (Salmo salar) gut microbiome.

Llewellyn MS, McGinnity P, Dionne M, Letourneau J, Thonier F, Carvalho GR, Creer S, Derome N.

ISME J. 2016 May;10(5):1280-4. doi: 10.1038/ismej.2015.189. Epub 2015 Oct 30.

8.

The signature of fine scale local adaptation in Atlantic salmon revealed from common garden experiments in nature.

O'Toole CL, Reed TE, Bailie D, Bradley C, Cotter D, Coughlan J, Cross T, Dillane E, McEvoy S, Ó Maoiléidigh N, Prodöhl P, Rogan G, McGinnity P.

Evol Appl. 2015 Oct;8(9):881-900. doi: 10.1111/eva.12299. Epub 2015 Sep 11.

9.

Implementing transition: Ready Steady Go.

Nagra A, McGinnity PM, Davis N, Salmon AP.

Arch Dis Child Educ Pract Ed. 2015 Dec;100(6):313-20. doi: 10.1136/archdischild-2014-307423. Epub 2015 Jun 10.

10.

Quantifying heritable variation in fitness-related traits of wild, farmed and hybrid Atlantic salmon families in a wild river environment.

Reed TE, Prodöhl P, Hynes R, Cross T, Ferguson A, McGinnity P.

Heredity (Edinb). 2015 Aug;115(2):173-84. doi: 10.1038/hdy.2015.29. Epub 2015 Apr 29.

11.

Where the lake meets the sea: strong reproductive isolation is associated with adaptive divergence between lake resident and anadromous three-spined sticklebacks.

Ravinet M, Hynes R, Poole R, Cross TF, McGinnity P, Harrod C, Prodöhl PA.

PLoS One. 2015 Apr 14;10(4):e0122825. doi: 10.1371/journal.pone.0122825. eCollection 2015.

12.

Population genomic analyses of early-phase Atlantic Salmon (Salmo salar) domestication/captive breeding.

Mäkinen H, Vasemägi A, McGinnity P, Cross TF, Primmer CR.

Evol Appl. 2015 Jan;8(1):93-107. doi: 10.1111/eva.12230. Epub 2014 Nov 20.

13.

Operationalizing resilience for adaptive coral reef management under global environmental change.

Anthony KR, Marshall PA, Abdulla A, Beeden R, Bergh C, Black R, Eakin CM, Game ET, Gooch M, Graham NA, Green A, Heron SF, van Hooidonk R, Knowland C, Mangubhai S, Marshall N, Maynard JA, McGinnity P, McLeod E, Mumby PJ, Nyström M, Obura D, Oliver J, Possingham HP, Pressey RL, Rowlands GP, Tamelander J, Wachenfeld D, Wear S.

Glob Chang Biol. 2015 Jan;21(1):48-61. doi: 10.1111/gcb.12700. Epub 2014 Sep 5. Review.

14.

Multiplexing with three-primer PCR for rapid and economical microsatellite validation.

Vartia S, Collins PC, Cross TF, Fitzgerald RD, Gauthier DT, McGinnity P, Mirimin L, Carlsson J.

Hereditas. 2014 Jun;151(2-3):43-54. doi: 10.1111/hrd2.00044.

15.

Molecular pedigree reconstruction and estimation of evolutionary parameters in a wild Atlantic salmon river system with incomplete sampling: a power analysis.

Aykanat T, Johnston SE, Cotter D, Cross TF, Poole R, Prodőhl PA, Reed T, Rogan G, McGinnity P, Primmer CR.

BMC Evol Biol. 2014 Mar 31;14(1):68. doi: 10.1186/1471-2148-14-68.

16.

An analysis of genetic stock identification on a small geographical scale using microsatellite markers, and its application in the management of a mixed-stock fishery for Atlantic salmon Salmo salar in Ireland.

Ensing D, Crozier WW, Boylan P, O'Maoiléidigh N, McGinnity P.

J Fish Biol. 2013 Jun;82(6):2080-94. doi: 10.1111/jfb.12139. Epub 2013 May 14.

PMID:
23731153
17.

Beaufort trout MicroPlex: a high-throughput multiplex platform comprising 38 informative microsatellite loci for use in resident and anadromous (sea trout) brown trout Salmo trutta genetic studies.

Keenan K, Bradley CR, Magee JJ, Hynes RA, Kennedy RJ, Crozier WW, Poole R, Cross TF, McGinnity P, Prodöhl PA.

J Fish Biol. 2013 Jun;82(6):1789-804. doi: 10.1111/jfb.12095.

PMID:
23731137
18.

Selection and phylogenetics of salmonid MHC class I: wild brown trout (Salmo trutta) differ from a non-native introduced strain.

O'Farrell B, Benzie JA, McGinnity P, de Eyto E, Dillane E, Coughlan J, Cross TF.

PLoS One. 2013 May 7;8(5):e63035. doi: 10.1371/journal.pone.0063035. Print 2013.

19.

Rapid, economical single-nucleotide polymorphism and microsatellite discovery based on de novo assembly of a reduced representation genome in a non-model organism: a case study of Atlantic cod Gadus morhua.

Carlsson J, Gauthier DT, Carlsson JE, Coughlan JP, Dillane E, Fitzgerald RD, Keating U, McGinnity P, Mirimin L, Cross TF.

J Fish Biol. 2013 Mar;82(3):944-58. doi: 10.1111/jfb.12034. Epub 2013 Jan 30.

PMID:
23464553
20.

Screen for Footprints of Selection during Domestication/Captive Breeding of Atlantic Salmon.

Vasemägi A, Nilsson J, McGinnity P, Cross T, O'Reilly P, Glebe B, Peng B, Berg PR, Primmer CR.

Comp Funct Genomics. 2012;2012:628204. doi: 10.1155/2012/628204. Epub 2012 Dec 27.

21.

SNP-array reveals genome-wide patterns of geographical and potential adaptive divergence across the natural range of Atlantic salmon (Salmo salar).

Bourret V, Kent MP, Primmer CR, Vasemägi A, Karlsson S, Hindar K, McGinnity P, Verspoor E, Bernatchez L, Lien S.

Mol Ecol. 2013 Feb;22(3):532-51. doi: 10.1111/mec.12003. Epub 2012 Sep 12.

PMID:
22967111
22.

Balancing selection on MHC class I in wild brown trout Salmo trutta.

O'Farrell B, Dennis C, Benzie JA, McGinnity P, Carlsson J, de Eyto E, Coughlan JP, Igoe F, Meehan R, Cross TF.

J Fish Biol. 2012 Sep;81(4):1357-74. doi: 10.1111/j.1095-8649.2012.03421.x.

PMID:
22957875
23.
24.

Varying disease-mediated selection at different life-history stages of Atlantic salmon in fresh water.

de Eyto E, McGinnity P, Huisman J, Coughlan J, Consuegra S, Farrell K, O'Toole C, Tufto J, Megens HJ, Jordan W, Cross T, Stet RJ.

Evol Appl. 2011 Nov;4(6):749-62. doi: 10.1111/j.1752-4571.2011.00197.x. Epub 2011 Jul 4.

25.

MHC-mediated spatial distribution in brown trout (Salmo trutta) fry.

O'Farrell B, Benzie JA, McGinnity P, Carlsson J, Eyto Ed, Dillane E, Graham C, Coughlan J, Cross T.

Heredity (Edinb). 2012 Apr;108(4):403-9. doi: 10.1038/hdy.2011.87. Epub 2011 Sep 21.

26.

Sea-age variation in maiden Atlantic salmon spawners: phenotypic plasticity or genetic polymorphism?

Gurney WS, Bacon PJ, Speirs DC, McGinnity P, Verspoor E.

Bull Math Biol. 2012 Mar;74(3):615-40. doi: 10.1007/s11538-011-9679-8. Epub 2011 Aug 5.

PMID:
21818674
27.

Microsatellite standardization and evaluation of genotyping error in a large multi-partner research programme for conservation of Atlantic salmon (Salmo salar L.).

Ellis JS, Gilbey J, Armstrong A, Balstad T, Cauwelier E, Cherbonnel C, Consuegra S, Coughlan J, Cross TF, Crozier W, Dillane E, Ensing D, García de Leániz C, García-Vázquez E, Griffiths AM, Hindar K, Hjorleifsdottir S, Knox D, Machado-Schiaffino G, McGinnity P, Meldrup D, Nielsen EE, Olafsson K, Primmer CR, Prodohl P, Stradmeyer L, Vähä JP, Verspoor E, Wennevik V, Stevens JR.

Genetica. 2011 Mar;139(3):353-67. doi: 10.1007/s10709-011-9554-4. Epub 2011 Feb 1.

28.

Contrasting responses to selection in class I and class IIα major histocompatibility-linked markers in salmon.

Consuegra S, de Eyto E, McGinnity P, Stet RJ, Jordan WC.

Heredity (Edinb). 2011 Aug;107(2):143-54. doi: 10.1038/hdy.2010.177. Epub 2011 Jan 26.

29.

Genetic stock identification of Atlantic salmon (Salmo salar) populations in the southern part of the European range.

Griffiths AM, Machado-Schiaffino G, Dillane E, Coughlan J, Horreo JL, Bowkett AE, Minting P, Toms S, Roche W, Gargan P, McGinnity P, Cross T, Bright D, Garcia-Vazquez E, Stevens JR.

BMC Genet. 2010 Apr 29;11:31. doi: 10.1186/1471-2156-11-31.

30.

Impact of naturally spawning captive-bred Atlantic salmon on wild populations: depressed recruitment and increased risk of climate-mediated extinction.

McGinnity P, Jennings E, DeEyto E, Allott N, Samuelsson P, Rogan G, Whelan K, Cross T.

Proc Biol Sci. 2009 Oct 22;276(1673):3601-10. doi: 10.1098/rspb.2009.0799. Epub 2009 Jul 29.

31.

Demographics and landscape features determine intrariver population structure in Atlantic salmon (Salmo salar L.): the case of the River Moy in Ireland.

Dillane E, McGinnity P, Coughlan JP, Cross MC, De Eyto E, Kenchington E, Prodöhl P, Cross TF.

Mol Ecol. 2008 Nov;17(22):4786-800. doi: 10.1111/j.1365-294X.2008.03939.x.

PMID:
19140972
32.

Natural selection acts on Atlantic salmon major histocompatibility (MH) variability in the wild.

de Eyto E, McGinnity P, Consuegra S, Coughlan J, Tufto J, Farrell K, Megens HJ, Jordan W, Cross T, Stet RJ.

Proc Biol Sci. 2007 Mar 22;274(1611):861-9.

33.

Variation in Lyman-alpha fine structure components for Cl XVII during a tokamak plasma shot.

Ashbourn JM, McGinnity P, Peacock NJ.

Phys Rev E Stat Nonlin Soft Matter Phys. 2005 Jan;71(1 Pt 2):017401. Epub 2005 Jan 7.

PMID:
15697776
34.

Fitness reduction and potential extinction of wild populations of Atlantic salmon, Salmo salar, as a result of interactions with escaped farm salmon.

McGinnity P, Prodöhl P, Ferguson A, Hynes R, Maoiléidigh NO, Baker N, Cotter D, O'Hea B, Cooke D, Rogan G, Taggart J, Cross T.

Proc Biol Sci. 2003 Dec 7;270(1532):2443-50.

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