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Items: 20

1.

Contrasting Patterns of Rapid Molecular Evolution within the p53 Network across Mammal and Sauropsid Lineages.

Passow CN, Bronikowski AM, Blackmon H, Parsai S, Schwartz TS, McGaugh SE.

Genome Biol Evol. 2019 Mar 1;11(3):629-643. doi: 10.1093/gbe/evy273.

2.

Nonrandom RNAseq gene expression associated with RNAlater and flash freezing storage methods.

Passow CN, Kono TJY, Stahl BA, Jaggard JB, Keene AC, McGaugh SE.

Mol Ecol Resour. 2019 Mar;19(2):456-464. doi: 10.1111/1755-0998.12965. Epub 2018 Dec 21.

PMID:
30447171
3.

The role of gene flow in rapid and repeated evolution of cave-related traits in Mexican tetra, Astyanax mexicanus.

Herman A, Brandvain Y, Weagley J, Jeffery WR, Keene AC, Kono TJY, Bilandžija H, Borowsky R, Espinasa L, O'Quin K, Ornelas-García CP, Yoshizawa M, Carlson B, Maldonado E, Gross JB, Cartwright RA, Rohner N, Warren WC, McGaugh SE.

Mol Ecol. 2018 Nov;27(22):4397-4416. doi: 10.1111/mec.14877. Epub 2018 Oct 16.

PMID:
30252986
4.

Molecular Adaptations for Sensing and Securing Prey and Insight into Amniote Genome Diversity from the Garter Snake Genome.

Perry BW, Card DC, McGlothlin JW, Pasquesi GIM, Adams RH, Schield DR, Hales NR, Corbin AB, Demuth JP, Hoffmann FG, Vandewege MW, Schott RK, Bhattacharyya N, Chang BSW, Casewell NR, Whiteley G, Reyes-Velasco J, Mackessy SP, Gamble T, Storey KB, Biggar KK, Passow CN, Kuo CH, McGaugh SE, Bronikowski AM, de Koning APJ, Edwards SV, Pfrender ME, Minx P, Brodie ED 3rd, Brodie ED Jr, Warren WC, Castoe TA.

Genome Biol Evol. 2018 Aug 1;10(8):2110-2129. doi: 10.1093/gbe/evy157.

5.

Tandem Duplicate Genes in Maize Are Abundant and Date to Two Distinct Periods of Time.

Kono TJY, Brohammer AB, McGaugh SE, Hirsch CN.

G3 (Bethesda). 2018 Aug 30;8(9):3049-3058. doi: 10.1534/g3.118.200580.

6.

The evolution of a series of behavioral traits is associated with autism-risk genes in cavefish.

Yoshizawa M, Settle A, Hermosura MC, Tuttle LJ, Cetraro N, Passow CN, McGaugh SE.

BMC Evol Biol. 2018 Jun 18;18(1):89. doi: 10.1186/s12862-018-1199-9.

7.

The limited role of differential fractionation in genome content variation and function in maize (Zea mays L.) inbred lines.

Brohammer AB, Kono TJY, Springer NM, McGaugh SE, Hirsch CN.

Plant J. 2018 Jan;93(1):131-141. doi: 10.1111/tpj.13765. Epub 2017 Dec 2.

8.

A local duplication of the Melanocortin receptor 1 locus in Astyanax.

Gross JB, Weagley J, Stahl BA, Ma L, Espinasa L, McGaugh SE.

Genome. 2018 Apr;61(4):254-265. doi: 10.1139/gen-2017-0049. Epub 2017 Jul 24.

9.

Growth and stress response mechanisms underlying post-feeding regenerative organ growth in the Burmese python.

Andrew AL, Perry BW, Card DC, Schield DR, Ruggiero RP, McGaugh SE, Choudhary A, Secor SM, Castoe TA.

BMC Genomics. 2017 May 2;18(1):338. doi: 10.1186/s12864-017-3743-1.

10.

Rapid molecular evolution across amniotes of the IIS/TOR network.

McGaugh SE, Bronikowski AM, Kuo CH, Reding DM, Addis EA, Flagel LE, Janzen FJ, Schwartz TS.

Proc Natl Acad Sci U S A. 2015 Jun 2;112(22):7055-60. doi: 10.1073/pnas.1419659112. Epub 2015 May 19.

11.

The cavefish genome reveals candidate genes for eye loss.

McGaugh SE, Gross JB, Aken B, Blin M, Borowsky R, Chalopin D, Hinaux H, Jeffery WR, Keene A, Ma L, Minx P, Murphy D, O'Quin KE, Rétaux S, Rohner N, Searle SM, Stahl BA, Tabin C, Volff JN, Yoshizawa M, Warren WC.

Nat Commun. 2014 Oct 20;5:5307. doi: 10.1038/ncomms6307.

12.

How hot are drosophila hotspots? examining recombination rate variation and associations with nucleotide diversity, divergence, and maternal age in Drosophila pseudoobscura.

Manzano-Winkler B, McGaugh SE, Noor MA.

PLoS One. 2013 Aug 13;8(8):e71582. doi: 10.1371/journal.pone.0071582. eCollection 2013.

13.

The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage.

Shaffer HB, Minx P, Warren DE, Shedlock AM, Thomson RC, Valenzuela N, Abramyan J, Amemiya CT, Badenhorst D, Biggar KK, Borchert GM, Botka CW, Bowden RM, Braun EL, Bronikowski AM, Bruneau BG, Buck LT, Capel B, Castoe TA, Czerwinski M, Delehaunty KD, Edwards SV, Fronick CC, Fujita MK, Fulton L, Graves TA, Green RE, Haerty W, Hariharan R, Hernandez O, Hillier LW, Holloway AK, Janes D, Janzen FJ, Kandoth C, Kong L, de Koning AP, Li Y, Literman R, McGaugh SE, Mork L, O'Laughlin M, Paitz RT, Pollock DD, Ponting CP, Radhakrishnan S, Raney BJ, Richman JM, St John J, Schwartz T, Sethuraman A, Spinks PQ, Storey KB, Thane N, Vinar T, Zimmerman LM, Warren WC, Mardis ER, Wilson RK.

Genome Biol. 2013 Mar 28;14(3):R28. doi: 10.1186/gb-2013-14-3-r28.

14.

Recombination modulates how selection affects linked sites in Drosophila.

McGaugh SE, Heil CS, Manzano-Winkler B, Loewe L, Goldstein S, Himmel TL, Noor MA.

PLoS Biol. 2012;10(11):e1001422. doi: 10.1371/journal.pbio.1001422. Epub 2012 Nov 13.

15.

Effects of premature termination codon polymorphisms in the Drosophila pseudoobscura subclade.

Hoehn KB, McGaugh SE, Noor MA.

J Mol Evol. 2012 Oct;75(3-4):141-50. doi: 10.1007/s00239-012-9528-x. Epub 2012 Nov 7. Erratum in: J Mol Evol. 2013 Feb;76(1-2):81.

16.

Geographic selection in the small heat shock gene complex differentiating populations of Drosophila pseudoobscura.

Graham AM, Merrill JD, McGaugh SE, Noor MA.

J Hered. 2012 May-Jun;103(3):400-7. doi: 10.1093/jhered/esr150. Epub 2012 Feb 16.

17.

Genomic impacts of chromosomal inversions in parapatric Drosophila species.

McGaugh SE, Noor MA.

Philos Trans R Soc Lond B Biol Sci. 2012 Feb 5;367(1587):422-9. doi: 10.1098/rstb.2011.0250.

18.

Effective heritability of targets of sex-ratio selection under environmental sex determination.

McGaugh SE, Janzen FJ.

J Evol Biol. 2011 Apr;24(4):784-94. doi: 10.1111/j.1420-9101.2010.02211.x. Epub 2011 Jan 24.

19.

Inheritance of nesting behaviour across natural environmental variation in a turtle with temperature-dependent sex determination.

McGaugh SE, Schwanz LE, Bowden RM, Gonzalez JE, Janzen FJ.

Proc Biol Sci. 2010 Apr 22;277(1685):1219-26. doi: 10.1098/rspb.2009.1883. Epub 2009 Dec 16.

20.

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