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Items: 33

1.

Europe PMC in 2017.

Levchenko M, Gou Y, Graef F, Hamelers A, Huang Z, Ide-Smith M, Iyer A, Kilian O, Katuri J, Kim JH, Marinos N, Nambiar R, Parkin M, Pi X, Rogers F, Talo F, Vartak V, Venkatesan A, McEntyre J.

Nucleic Acids Res. 2018 Jan 4;46(D1):D1254-D1260. doi: 10.1093/nar/gkx1005.

2.

The BioStudies database-one stop shop for all data supporting a life sciences study.

Sarkans U, Gostev M, Athar A, Behrangi E, Melnichuk O, Ali A, Minguet J, Rada JC, Snow C, Tikhonov A, Brazma A, McEntyre J.

Nucleic Acids Res. 2018 Jan 4;46(D1):D1266-D1270. doi: 10.1093/nar/gkx965.

3.

SciLite: a platform for displaying text-mined annotations as a means to link research articles with biological data.

Venkatesan A, Kim JH, Talo F, Ide-Smith M, Gobeill J, Carter J, Batista-Navarro R, Ananiadou S, Ruch P, McEntyre J.

Wellcome Open Res. 2017 Jul 10;1:25. doi: 10.12688/wellcomeopenres.10210.2. eCollection 2016.

4.

Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data.

McMurry JA, Juty N, Blomberg N, Burdett T, Conlin T, Conte N, Courtot M, Deck J, Dumontier M, Fellows DK, Gonzalez-Beltran A, Gormanns P, Grethe J, Hastings J, Hériché JK, Hermjakob H, Ison JC, Jimenez RC, Jupp S, Kunze J, Laibe C, Le Novère N, Malone J, Martin MJ, McEntyre JR, Morris C, Muilu J, Müller W, Rocca-Serra P, Sansone SA, Sariyar M, Snoep JL, Soiland-Reyes S, Stanford NJ, Swainston N, Washington N, Williams AR, Wimalaratne SM, Winfree LM, Wolstencroft K, Goble C, Mungall CJ, Haendel MA, Parkinson H.

PLoS Biol. 2017 Jun 29;15(6):e2001414. doi: 10.1371/journal.pbio.2001414. eCollection 2017 Jun.

5.

Literature evidence in open targets - a target validation platform.

Kafkas Ş, Dunham I, McEntyre J.

J Biomed Semantics. 2017 Jun 6;8(1):20. doi: 10.1186/s13326-017-0131-3.

6.

Identifying ELIXIR Core Data Resources.

Durinx C, McEntyre J, Appel R, Apweiler R, Barlow M, Blomberg N, Cook C, Gasteiger E, Kim JH, Lopez R, Redaschi N, Stockinger H, Teixeira D, Valencia A.

Version 2. F1000Res. 2016 Sep 30 [revised 2017 Jan 1];5. pii: ELIXIR-2422. doi: 10.12688/f1000research.9656.2. eCollection 2016.

7.

Pressing needs of biomedical text mining in biocuration and beyond: opportunities and challenges.

Singhal A, Leaman R, Catlett N, Lemberger T, McEntyre J, Polson S, Xenarios I, Arighi C, Lu Z.

Database (Oxford). 2016 Dec 26;2016. pii: baw161. doi: 10.1093/database/baw161. Print 2016.

8.

Open Targets: a platform for therapeutic target identification and validation.

Koscielny G, An P, Carvalho-Silva D, Cham JA, Fumis L, Gasparyan R, Hasan S, Karamanis N, Maguire M, Papa E, Pierleoni A, Pignatelli M, Platt T, Rowland F, Wankar P, Bento AP, Burdett T, Fabregat A, Forbes S, Gaulton A, Gonzalez CY, Hermjakob H, Hersey A, Jupe S, Kafkas Ş, Keays M, Leroy C, Lopez FJ, Magarinos MP, Malone J, McEntyre J, Munoz-Pomer Fuentes A, O'Donovan C, Papatheodorou I, Parkinson H, Palka B, Paschall J, Petryszak R, Pratanwanich N, Sarntivijal S, Saunders G, Sidiropoulos K, Smith T, Sondka Z, Stegle O, Tang YA, Turner E, Vaughan B, Vrousgou O, Watkins X, Martin MJ, Sanseau P, Vamathevan J, Birney E, Barrett J, Dunham I.

Nucleic Acids Res. 2017 Jan 4;45(D1):D985-D994. doi: 10.1093/nar/gkw1055. Epub 2016 Nov 29.

9.

Overview of the interactive task in BioCreative V.

Wang Q, S Abdul S, Almeida L, Ananiadou S, Balderas-Martínez YI, Batista-Navarro R, Campos D, Chilton L, Chou HJ, Contreras G, Cooper L, Dai HJ, Ferrell B, Fluck J, Gama-Castro S, George N, Gkoutos G, Irin AK, Jensen LJ, Jimenez S, Jue TR, Keseler I, Madan S, Matos S, McQuilton P, Milacic M, Mort M, Natarajan J, Pafilis E, Pereira E, Rao S, Rinaldi F, Rothfels K, Salgado D, Silva RM, Singh O, Stefancsik R, Su CH, Subramani S, Tadepally HD, Tsaprouni L, Vasilevsky N, Wang X, Chatr-Aryamontri A, Laulederkind SJ, Matis-Mitchell S, McEntyre J, Orchard S, Pundir S, Rodriguez-Esteban R, Van Auken K, Lu Z, Schaeffer M, Wu CH, Hirschman L, Arighi CN.

Database (Oxford). 2016 Sep 1;2016. pii: baw119. doi: 10.1093/database/baw119. Print 2016.

10.

Patterns of database citation in articles and patents indicate long-term scientific and industry value of biological data resources.

Bousfield D, McEntyre J, Velankar S, Papadatos G, Bateman A, Cochrane G, Kim JH, Graef F, Vartak V, Alako B, Blomberg N.

F1000Res. 2016 Feb 11;5. pii: ELIXIR-160. doi: 10.12688/f1000research.7911.1. eCollection 2016.

11.

The EMBL-EBI channel.

McEntyre J, Birney E.

F1000Res. 2016 Jan 12;5:52. doi: 10.12688/f1000research.7764.1. eCollection 2016.

12.

The BioStudies database.

McEntyre J, Sarkans U, Brazma A.

Mol Syst Biol. 2015 Dec 23;11(12):847. doi: 10.15252/msb.20156658. No abstract available.

13.

Database citation in supplementary data linked to Europe PubMed Central full text biomedical articles.

Kafkas Ş, Kim JH, Pi X, McEntyre JR.

J Biomed Semantics. 2015 Jan 5;6:1. doi: 10.1186/2041-1480-6-1. eCollection 2015.

14.

Section level search functionality in Europe PMC.

Kafkas Ş, Pi X, Marinos N, Talo' F, Morrison A, McEntyre JR.

J Biomed Semantics. 2015 Mar 10;6:7. doi: 10.1186/s13326-015-0003-7. eCollection 2015.

15.

Database citation in full text biomedical articles.

Kafkas Ş, Kim JH, McEntyre JR.

PLoS One. 2013 May 29;8(5):e63184. doi: 10.1371/journal.pone.0063184. Print 2013.

16.

Application of text-mining for updating protein post-translational modification annotation in UniProtKB.

Veuthey AL, Bridge A, Gobeill J, Ruch P, McEntyre JR, Bougueleret L, Xenarios I.

BMC Bioinformatics. 2013 Mar 22;14:104. doi: 10.1186/1471-2105-14-104.

17.

UKPMC: a full text article resource for the life sciences.

McEntyre JR, Ananiadou S, Andrews S, Black WJ, Boulderstone R, Buttery P, Chaplin D, Chevuru S, Cobley N, Coleman LA, Davey P, Gupta B, Haji-Gholam L, Hawkins C, Horne A, Hubbard SJ, Kim JH, Lewin I, Lyte V, MacIntyre R, Mansoor S, Mason L, McNaught J, Newbold E, Nobata C, Ong E, Pillai S, Rebholz-Schuhmann D, Rosie H, Rowbotham R, Rupp CJ, Stoehr P, Vaughan P.

Nucleic Acids Res. 2011 Jan;39(Database issue):D58-65. doi: 10.1093/nar/gkq1063. Epub 2010 Nov 9.

18.

Finding query suggestions for PubMed.

Lu Z, Wilbur WJ, McEntyre JR, Iskhakov A, Szilagyi L.

AMIA Annu Symp Proc. 2009 Nov 14;2009:396-400.

19.

Biocurators: contributors to the world of science.

Bourne PE, McEntyre J.

PLoS Comput Biol. 2006 Oct 27;2(10):e142. No abstract available.

20.

Patterns and clusters within the PSM column in TiBS, 1992-2004.

McEntyre JR, Gibson TJ.

Trends Biochem Sci. 2004 Dec;29(12):627-33.

PMID:
15544947
21.

PubMed: bridging the information gap.

McEntyre J, Lipman D.

CMAJ. 2001 May 1;164(9):1317-9. No abstract available.

22.

PubMed Central decentralized.

Sequeira E, McEntyre J, Lipman D.

Nature. 2001 Apr 12;410(6830):740. No abstract available.

PMID:
11298409
23.

Guide to the draft human genome.

Wolfsberg TG, McEntyre J, Schuler GD.

Nature. 2001 Feb 15;409(6822):824-6.

PMID:
11236998
24.

This round's on TiBS.

McEntyre J.

Trends Biochem Sci. 2000 Dec 1;25(12):581. No abstract available.

PMID:
11116177
25.

Linking up with Entrez.

McEntyre J.

Trends Genet. 1998 Jan;14(1):39-40. No abstract available.

PMID:
9448465
26.

Ready for a motif submission? A proposed checklist.

Bork P, Ouzounis C, McEntyre J.

Trends Biochem Sci. 1995 Mar;20(3):104. No abstract available.

PMID:
7709426
27.

I think therefore I publish.

Boguski M, McEntyre J.

Trends Biochem Sci. 1994 Feb;19(2):71. No abstract available.

PMID:
7909178
28.
29.

A successful treatment for aphakic cystoid macular edema.

McEntyre JM.

Ann Ophthalmol. 1978 Sep;10(9):1219-24.

PMID:
736409
30.

Incorporation of sodium sulfate S 35 by cryopreserved corneal grafts in vivo.

Polack FM, McEntyre JM.

Arch Ophthalmol. 1969 Apr;81(4):577-82. No abstract available.

PMID:
4888032
31.

Experimental penetrating keratoplasty in the dog.

McEntyre JM.

Arch Ophthalmol. 1968 Sep;80(3):372-6. No abstract available.

PMID:
4876374
32.

Visual aid device.

McEntyre JM.

Am J Ophthalmol. 1967 Aug;64(2):317-8. No abstract available.

PMID:
6036292
33.

Retinal embolus from extracranial carotid artery aneurysm.

McEntyre JM, Keates EU, Whiteley WH.

Arch Ophthalmol. 1967 Mar;77(3):317-9. No abstract available.

PMID:
6019550

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