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Understanding Respiratory Restrictions as a Function of the Scoliotic Spinal Curve in Thoracic Insufficiency Syndrome: A 4D Dynamic MR Imaging Study.

Udupa JK, Tong Y, Capraro A, McDonough JM, Mayer OH, Ho S, Wileyto P, Torigian DA, Campbell RM Jr.

J Pediatr Orthop. 2020 Apr;40(4):183-189. doi: 10.1097/BPO.0000000000001258.


Thoracic growth deficiency in childhood cancer survivors may cause overestimation of lung disease.

Dean T, McDonough JM, Josephson M, Ginsberg JP, Carlson CA, Fiorino EK, Goldfarb SB.

Pediatr Pulmonol. 2019 Oct;54(10):1602-1609. doi: 10.1002/ppul.24430. Epub 2019 Jul 3.


Quantitative Dynamic Thoracic MRI: Application to Thoracic Insufficiency Syndrome in Pediatric Patients.

Tong Y, Udupa JK, McDonough JM, Wileyto EP, Capraro A, Wu C, Ho S, Galagedera N, Talwar D, Mayer OH, Torigian DA, Campbell RM.

Radiology. 2019 Jul;292(1):206-213. doi: 10.1148/radiol.2019181731. Epub 2019 May 21.


Identifying and treating intrinsic PEEP in infants with severe bronchopulmonary dysplasia.

Napolitano N, Jalal K, McDonough JM, Monk HM, Zhang H, Jensen E, Dysart KC, Kirpalani HM, Panitch HB.

Pediatr Pulmonol. 2019 Jul;54(7):1045-1051. doi: 10.1002/ppul.24328. Epub 2019 Apr 4.


Quantitative dynamic MRI (QdMRI) Volumetric Analysis of Pediatric Patients with Thoracic Insufficiency Syndrome.

Tong Y, Udupa JK, Wileyto EP, Wu C, McDonough JM, Capraro A, Mayer OH, Torigian DA, Campbell RM Jr.

Proc SPIE Int Soc Opt Eng. 2018 Feb;10578. pii: 1057806. doi: 10.1117/12.2294048. Epub 2018 Mar 12.


Nonlinear auditory models yield new insights into representations of vowels.

Carney LH, McDonough JM.

Atten Percept Psychophys. 2019 May;81(4):1034-1046. doi: 10.3758/s13414-018-01644-w.


Understanding Respiratory Restrictions as a Function of the Scoliotic Spinal Curve in Thoracic Insufficiency Syndrome: A 4D Dynamic MR Imaging Study.

Udupa JK, Tong Y, Capraro A, McDonough JM, Mayer OH, Ho S, Wileyto P, Torigian DA, Campbell RM Jr.

J Pediatr Orthop. 2018 Sep 20. doi: 10.1097/BPO.0000000000001258. [Epub ahead of print]


Tumor antigen CA125 suppresses antibody-dependent cellular cytotoxicity (ADCC) via direct antibody binding and suppressed Fc-γ receptor engagement.

Kline JB, Kennedy RP, Albone E, Chao Q, Fernando S, McDonough JM, Rybinski K, Wang W, Somers EB, Schweizer C, Grasso L, Nicolaides NC.

Oncotarget. 2017 Jul 7;8(32):52045-52060. doi: 10.18632/oncotarget.19090. eCollection 2017 Aug 8.


Interactive iterative relative fuzzy connectedness lung segmentation on thoracic 4D dynamic MR images.

Tong Y, Udupa JK, Odhner D, Wu C, Zhao Y, McDonough JM, Capraro A, Torigian DA, Campbell RM.

Proc SPIE Int Soc Opt Eng. 2017 Feb;10137. pii: 1013723. doi: 10.1117/12.2254968. Epub 2017 Mar 13.


Adherence and barriers to hyperinsufflation in children with congenital muscular dystrophy.

Pascoe JE, Sawnani H, Mayer OH, McConnell K, McDonough JM, White C, Rutkowski AM, Amin RS, Modi AC.

Pediatr Pulmonol. 2017 Jul;52(7):939-945. doi: 10.1002/ppul.23645. Epub 2016 Nov 22.


Retrospective 4D MR image construction from free-breathing slice Acquisitions: A novel graph-based approach.

Tong Y, Udupa JK, Ciesielski KC, Wu C, McDonough JM, Mong DA, Campbell RM Jr.

Med Image Anal. 2017 Jan;35:345-359. doi: 10.1016/ Epub 2016 Aug 13.


Computational fluid dynamics upper airway effective compliance, critical closing pressure, and obstructive sleep apnea severity in obese adolescent girls.

Wootton DM, Sin S, Luo H, Yazdani A, McDonough JM, Wagshul ME, Isasi CR, Arens R.

J Appl Physiol (1985). 2016 Oct 1;121(4):925-931. doi: 10.1152/japplphysiol.00190.2016. Epub 2016 Jul 21.


Upper Airway Vibration Perception in School-Aged Children with Obstructive Sleep Apnea.

Tapia IE, Kim JY, Cornaglia MA, Traylor J, Samuel GJ, McDonough JM, Marcus CL.

Sleep. 2016 Sep 1;39(9):1647-52. doi: 10.5665/sleep.6084.


Airway Resistance in Children with Obstructive Sleep Apnea Syndrome.

Tapia IE, Marcus CL, McDonough JM, Kim JY, Cornaglia MA, Xiao R, Allen JL.

Sleep. 2016 Apr 1;39(4):793-9. doi: 10.5665/sleep.5630.


Speech Coding in the Brain: Representation of Vowel Formants by Midbrain Neurons Tuned to Sound Fluctuations

Carney LH, Li T, McDonough JM.

eNeuro. 2015 Jul 20;2(4). pii: ENEURO.0004-15.2015. doi: 10.1523/ENEURO.0004-15.2015. eCollection 2015 Jul-Aug.


Cerebral Blood Flow Response to Hypercapnia in Children with Obstructive Sleep Apnea Syndrome.

Busch DR, Lynch JM, Winters ME, McCarthy AL, Newland JJ, Ko T, Cornaglia MA, Radcliffe J, McDonough JM, Samuel J, Matthews E, Xiao R, Yodh AG, Marcus CL, Licht DJ, Tapia IE.

Sleep. 2016 Jan 1;39(1):209-16. doi: 10.5665/sleep.5350.


Negative Expiratory Pressure Technique: An Awake Test to Measure Upper Airway Collapsibility in Adolescents.

Carrera HL, Marcus CL, McDonough JM, Oliva Morera JC, Huang J, Farre R, Montserrat JM.

Sleep. 2015 Nov 1;38(11):1783-91. doi: 10.5665/sleep.5164.


Anticipatory Deaccenting in Language Comprehension.

Carbary K, Brown M, Gunlogson C, McDonough JM, Fazlipour A, Tanenhaus MK.

Lang Cogn Neurosci. 2015 Feb;30(1-2):197-211.


Respiratory cortical processing to inspiratory resistances during wakefulness in children with the obstructive sleep apnea syndrome.

Tapia IE, McDonough JM, Huang J, Marcus CL, Gallagher PR, Shults J, Davenport PW.

J Appl Physiol (1985). 2015 Feb 15;118(4):400-7. doi: 10.1152/japplphysiol.00582.2014. Epub 2014 Dec 24.


Lung function over the first 3 years of life in children with congenital diaphragmatic hernia.

Panitch HB, Weiner DJ, Feng R, Perez MR, Healy F, McDonough JM, Rintoul N, Hedrick HL.

Pediatr Pulmonol. 2015 Sep;50(9):896-907. doi: 10.1002/ppul.23082. Epub 2014 Jul 10.


Pilot study of nasal expiratory positive airway pressure devices for the treatment of childhood obstructive sleep apnea syndrome.

Kureshi SA, Gallagher PR, McDonough JM, Cornaglia MA, Maggs J, Samuel J, Traylor J, Marcus CL.

J Clin Sleep Med. 2014 Jun 15;10(6):663-9. doi: 10.5664/jcsm.3796.


Computational fluid dynamics endpoints for assessment of adenotonsillectomy outcome in obese children with obstructive sleep apnea syndrome.

Luo H, Sin S, McDonough JM, Isasi CR, Arens R, Wootton DM.

J Biomech. 2014 Jul 18;47(10):2498-503. doi: 10.1016/j.jbiomech.2014.03.023. Epub 2014 Mar 24.


Respiratory muscle function in infants with spinal muscular atrophy type I.

Finkel RS, Weiner DJ, Mayer OH, McDonough JM, Panitch HB.

Pediatr Pulmonol. 2014 Dec;49(12):1234-42. doi: 10.1002/ppul.22997. Epub 2014 Apr 29.


Anterior nasal resistance in obese children with obstructive sleep apnea syndrome.

Sin S, Wootton DM, McDonough JM, Nandalike K, Arens R.

Laryngoscope. 2014 Nov;124(11):2640-4. doi: 10.1002/lary.24653. Epub 2014 Jul 7.


Computational fluid dynamics endpoints to characterize obstructive sleep apnea syndrome in children.

Wootton DM, Luo H, Persak SC, Sin S, McDonough JM, Isasi CR, Arens R.

J Appl Physiol (1985). 2014 Jan 1;116(1):104-12. doi: 10.1152/japplphysiol.00746.2013. Epub 2013 Nov 21.


Gene network analysis in a pediatric cohort identifies novel lung function genes.

Ong BA, Li J, McDonough JM, Wei Z, Kim C, Chiavacci R, Mentch F, Caboot JB, Spergel J, Allen JL, Sleiman PM, Hakonarson H.

PLoS One. 2013 Sep 2;8(9):e72899. doi: 10.1371/journal.pone.0072899. eCollection 2013.


Biplane angiography for experimental validation of computational fluid dynamic models of blood flow in artificial lungs.

Jones CC, Capasso P, McDonough JM, Wang D, Rosenstein KS, Zwischenberger JB.

ASAIO J. 2013 Jul-Aug;59(4):397-404. doi: 10.1097/MAT.0b013e3182937a80. Erratum in: ASAIO J. 2013 Nov-Dec;59(6):616. ASAIO J. 2013 Sep-Oct;59(5):519.


Improved computational fluid dynamic simulations of blood flow in membrane oxygenators from X-ray imaging.

Jones CC, McDonough JM, Capasso P, Wang D, Rosenstein KS, Zwischenberger JB.

Ann Biomed Eng. 2013 Oct;41(10):2088-98. doi: 10.1007/s10439-013-0824-4. Epub 2013 May 15.


Changes in gastric pressure and volume during mechanical in-exsufflation.

Miske LJ, McDonough JM, Weiner DJ, Panitch HB.

Pediatr Pulmonol. 2013 Aug;48(8):824-9. doi: 10.1002/ppul.22671. Epub 2012 Sep 4.


Ventilatory responses to hypercapnia during wakefulness and sleep in obese adolescents with and without obstructive sleep apnea syndrome.

Yuan H, Pinto SJ, Huang J, McDonough JM, Ward MB, Lee YN, Bradford RM, Gallagher PR, Shults J, Konstantinopoulou S, Samuel JM, Katz ES, Hua S, Tapia IE, Marcus CL.

Sleep. 2012 Sep 1;35(9):1257-67. doi: 10.5665/sleep.2082.


Non-invasive measurements of carboxyhemoglobin and methemoglobin in children with sickle cell disease.

Caboot JB, Jawad AF, McDonough JM, Bowdre CY, Arens R, Marcus CL, Mason TB, Smith-Whitley K, Ohene-Frempong K, Allen JL.

Pediatr Pulmonol. 2012 Aug;47(8):808-15. doi: 10.1002/ppul.22504. Epub 2012 Feb 10.


Upper airway lymphoid tissue size in children with sickle cell disease.

Strauss T, Sin S, Marcus CL, Mason TBA, McDonough JM, Allen JL, Caboot JB, Bowdre CY, Jawad AF, Smith-Whitley K, Ohene-Frempong K, Pack AI, Arens R.

Chest. 2012 Jul;142(1):94-100. doi: 10.1378/chest.11-2013.


Noninvasive estimation of pharyngeal airway resistance and compliance in children based on volume-gated dynamic MRI and computational fluid dynamics.

Persak SC, Sin S, McDonough JM, Arens R, Wootton DM.

J Appl Physiol (1985). 2011 Dec;111(6):1819-27. doi: 10.1152/japplphysiol.01230.2010. Epub 2011 Aug 18.


Upper airway collapsibility during wakefulness in children with sleep disordered breathing, as determined by the negative expiratory pressure technique.

Carrera HL, McDonough JM, Gallagher PR, Pinto S, Samuel J, DiFeo N, Marcus CL.

Sleep. 2011 Jun 1;34(6):717-24. doi: 10.5665/SLEEP.1034.


Upper airway structure and body fat composition in obese children with obstructive sleep apnea syndrome.

Arens R, Sin S, Nandalike K, Rieder J, Khan UI, Freeman K, Wylie-Rosett J, Lipton ML, Wootton DM, McDonough JM, Shifteh K.

Am J Respir Crit Care Med. 2011 Mar 15;183(6):782-7. doi: 10.1164/rccm.201008-1249OC. Epub 2010 Oct 8.


Rhino-sinus involvement in children with obstructive sleep apnea syndrome.

Arens R, Sin S, Willen S, Bent J, Parikh SR, Freeman K, Wootton DM, McDonough JM, Shifteh K.

Pediatr Pulmonol. 2010 Oct;45(10):993-8. doi: 10.1002/ppul.21284.


Three-dimensional poor man's Navier-Stokes equation: a discrete dynamical system exhibiting k(-5/3) inertial subrange energy scaling.

McDonough JM.

Phys Rev E Stat Nonlin Soft Matter Phys. 2009 Jun;79(6 Pt 2):065302. Epub 2009 Jun 3.


Do new anesthesia ventilators deliver small tidal volumes accurately during volume-controlled ventilation?

Bachiller PR, McDonough JM, Feldman JM.

Anesth Analg. 2008 May;106(5):1392-400, table of contents. doi: 10.1213/ane.0b013e31816a68c6.


Preclinical evaluation of MORAb-003, a humanized monoclonal antibody antagonizing folate receptor-alpha.

Ebel W, Routhier EL, Foley B, Jacob S, McDonough JM, Patel RK, Turchin HA, Chao Q, Kline JB, Old LJ, Phillips MD, Nicolaides NC, Sass PM, Grasso L.

Cancer Immun. 2007 Mar 9;7:6.


Upper airway collapsibility in anesthetized children.

Litman RS, McDonough JM, Marcus CL, Schwartz AR, Ward DS.

Anesth Analg. 2006 Mar;102(3):750-4.


Effect of lateral positioning on upper airway size and morphology in sedated children.

Litman RS, Wake N, Chan LM, McDonough JM, Sin S, Mahboubi S, Arens R.

Anesthesiology. 2005 Sep;103(3):484-8.


Computational fluid dynamics modeling of the upper airway of children with obstructive sleep apnea syndrome in steady flow.

Xu C, Sin S, McDonough JM, Udupa JK, Guez A, Arens R, Wootton DM.

J Biomech. 2006;39(11):2043-54. Epub 2005 Aug 10.


Changes in upper airway size during tidal breathing in children with obstructive sleep apnea syndrome.

Arens R, Sin S, McDonough JM, Palmer JM, Dominguez T, Meyer H, Wootton DM, Pack AI.

Am J Respir Crit Care Med. 2005 Jun 1;171(11):1298-304. Epub 2005 Mar 4.


Mandibular dimensions in children with obstructive sleep apnea syndrome.

Schiffman PH, Rubin NK, Dominguez T, Mahboubi S, Udupa JK, O'Donnell AR, McDonough JM, Maislin G, Schwab RJ, Arens R.

Sleep. 2004 Aug 1;27(5):959-65.


Respiratory inductance plethysmography in healthy 3- to 5-year-old children.

Mayer OH, Clayton RG Sr, Jawad AF, McDonough JM, Allen JL.

Chest. 2003 Nov;124(5):1812-9.


Noninvasive measurement of the tension-time index in children with neuromuscular disease.

Mulreany LT, Weiner DJ, McDonough JM, Panitch HB, Allen JL.

J Appl Physiol (1985). 2003 Sep;95(3):931-7.


System for upper airway segmentation and measurement with MR imaging and fuzzy connectedness.

Liu J, Udupa JK, Odhnera D, McDonough JM, Arens R.

Acad Radiol. 2003 Jan;10(1):13-24.


Upper airway size analysis by magnetic resonance imaging of children with obstructive sleep apnea syndrome.

Arens R, McDonough JM, Corbin AM, Rubin NK, Carroll ME, Pack AI, Liu J, Udupa JK.

Am J Respir Crit Care Med. 2003 Jan 1;167(1):65-70. Epub 2002 Oct 11.


Linear dimensions of the upper airway structure during development: assessment by magnetic resonance imaging.

Arens R, McDonough JM, Corbin AM, Hernandez ME, Maislin G, Schwab RJ, Pack AI.

Am J Respir Crit Care Med. 2002 Jan 1;165(1):117-22.


Fractal analysis of eye movements during reading.

Schmeisser ET, McDonough JM, Bond M, Hislop PD, Epstein AD.

Optom Vis Sci. 2001 Nov;78(11):805-14.


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