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Effect of a Laminarin Rich Macroalgal Extract on the Caecal and Colonic Microbiota in the Post-Weaned Pig.

Vigors S, O'Doherty JV, Rattigan R, McDonnell MJ, Rajauria G, Sweeney T.

Mar Drugs. 2020 Mar 11;18(3). pii: E157. doi: 10.3390/md18030157.


Whole Gene Sequencing of CFTR Reveals a High Prevalence of the Intronic Variant c.3874-4522A>G in Cystic Fibrosis.

Morris-Rosendahl DJ, Edwards M, McDonnell MJ, John S, Alton EW, Davies JC, Simmonds NJ.

Am J Respir Crit Care Med. 2020 Feb 4. doi: 10.1164/rccm.201908-1541LE. [Epub ahead of print] No abstract available.


Bronchiectasis in India: results from the European Multicentre Bronchiectasis Audit and Research Collaboration (EMBARC) and Respiratory Research Network of India Registry.

Dhar R, Singh S, Talwar D, Mohan M, Tripathi SK, Swarnakar R, Trivedi S, Rajagopala S, D'Souza G, Padmanabhan A, Baburao A, Mahesh PA, Ghewade B, Nair G, Jindal A, Jayadevappa GDH, Sawhney H, Sarmah KR, Saha K, Anantharaj S, Khanna A, Gami S, Shah A, Shah A, Dutt N, Garg H, Vyas S, Venugopal K, Prasad R, Aleemuddin NM, Karmakar S, Singh V, Jindal SK, Sharma S, Prajapat D, Chandrashekaria S, McDonnell MJ, Mishra A, Rutherford R, Ramanathan RP, Goeminne PC, Vasudev P, Dimakou K, Crichton ML, Jayaraj BS, Kungwani R, Das A, Sawhney M, Polverino E, Torres A, Gulecha NS, Shteinberg M, De Soyza A, Mangala A, Shah P, Chauhan NK, Jajodia N, Singhal A, Batra S, Hasan A, Limaye S, Salvi S, Aliberti S, Chalmers JD.

Lancet Glob Health. 2019 Sep;7(9):e1269-e1279. doi: 10.1016/S2214-109X(19)30327-4. Erratum in: Lancet Glob Health. 2019 Dec;7(12):e1621.


Bendopnoea in exercise limited patients with COPD.

McDonnell MJ, Duignan N, Campbell CD, Rutherford RM.

Respir Med. 2019 Jul - Aug;154:141-143. doi: 10.1016/j.rmed.2019.05.011. Epub 2019 Jun 13.


Inadequate assessment of adherence to maintenance medication leads to loss of power and increased costs in trials of severe asthma therapy: results from a systematic literature review and modelling study.

Mokoka MC, McDonnell MJ, MacHale E, Cushen B, Boland F, Cormican S, Doherty C, Doyle F, Costello RW, Greene G.

Eur Respir J. 2019 May 18;53(5). pii: 1802161. doi: 10.1183/13993003.02161-2018. Print 2019 May.


A roadmap for urban evolutionary ecology.

Rivkin LR, Santangelo JS, Alberti M, Aronson MFJ, de Keyzer CW, Diamond SE, Fortin MJ, Frazee LJ, Gorton AJ, Hendry AP, Liu Y, Losos JB, MacIvor JS, Martin RA, McDonnell MJ, Miles LS, Munshi-South J, Ness RW, Newman AEM, Stothart MR, Theodorou P, Thompson KA, Verrelli BC, Whitehead A, Winchell KM, Johnson MTJ.

Evol Appl. 2018 Dec 14;12(3):384-398. doi: 10.1111/eva.12734. eCollection 2019 Mar.


A qualitative synthesis of gastro-oesophageal reflux in bronchiectasis: Current understanding and future risk.

McDonnell MJ, O'Toole D, Ward C, Pearson JP, Lordan JL, De Soyza A, Loebinger M, Chalmers JD, Laffey JG, Rutherford RM.

Respir Med. 2018 Aug;141:132-143. doi: 10.1016/j.rmed.2018.06.031. Epub 2018 Jun 30. Review.


Survey of management of iatrogenic bleeding following bronchoscopic sampling.

Scott A, McDonnell MJ, Ahmed M, Flannery A, Mujammil I, Breen D, Rutherford RM.

Eur Respir Rev. 2018 Mar 28;27(147). pii: 170128. doi: 10.1183/16000617.0128-2017. Print 2018 Mar 31. No abstract available.


The independent contribution of Pseudomonas aeruginosa infection to long-term clinical outcomes in bronchiectasis.

Araújo D, Shteinberg M, Aliberti S, Goeminne PC, Hill AT, Fardon TC, Obradovic D, Stone G, Trautmann M, Davis A, Dimakou K, Polverino E, De Soyza A, McDonnell MJ, Chalmers JD.

Eur Respir J. 2018 Jan 31;51(2). pii: 1701953. doi: 10.1183/13993003.01953-2017. Print 2018 Feb.


Characterization of the "Frequent Exacerbator Phenotype" in Bronchiectasis.

Chalmers JD, Aliberti S, Filonenko A, Shteinberg M, Goeminne PC, Hill AT, Fardon TC, Obradovic D, Gerlinger C, Sotgiu G, Operschall E, Rutherford RM, Dimakou K, Polverino E, De Soyza A, McDonnell MJ.

Am J Respir Crit Care Med. 2018 Jun 1;197(11):1410-1420. doi: 10.1164/rccm.201711-2202OC.


Standardised classification of the aetiology of bronchiectasis using an objective algorithm.

Araújo D, Shteinberg M, Aliberti S, Goeminne PC, Hill AT, Fardon T, Obradovic D, Dimakou K, Polverino E, De Soyza A, McDonnell MJ, Chalmers JD.

Eur Respir J. 2017 Dec 14;50(6). pii: 1701289. doi: 10.1183/13993003.01289-2017. Print 2017 Dec. No abstract available.


European Respiratory Society guidelines for the management of adult bronchiectasis.

Polverino E, Goeminne PC, McDonnell MJ, Aliberti S, Marshall SE, Loebinger MR, Murris M, Cantón R, Torres A, Dimakou K, De Soyza A, Hill AT, Haworth CS, Vendrell M, Ringshausen FC, Subotic D, Wilson R, Vilaró J, Stallberg B, Welte T, Rohde G, Blasi F, Elborn S, Almagro M, Timothy A, Ruddy T, Tonia T, Rigau D, Chalmers JD.

Eur Respir J. 2017 Sep 9;50(3). pii: 1700629. doi: 10.1183/13993003.00629-2017. Print 2017 Sep.


Gastrointestinal stromal tumours (GISTs): an insight into clinical practice with review of literature.

McDonnell MJ, Punnoose S, Viswanath YKS, Wadd NJ, Dhar A.

Frontline Gastroenterol. 2017 Jan;8(1):19-25. doi: 10.1136/flgastro-2015-100670. Epub 2016 Jul 19.


Patterns of Disease in Patients with Middle-Lobe Predominant Bronchiectasis.

McDonnell MJ, Ahmed M, Das J, O'Mahony M, Breen D, O'Regan A, Gilmartin JJ, Bruzzi J, Rutherford RM.

Respiration. 2017;93(6):406-414. doi: 10.1159/000464252. Epub 2017 Apr 20.


Seaweed extracts and galacto-oligosaccharides improve intestinal health in pigs following Salmonella Typhimurium challenge.

Bouwhuis MA, McDonnell MJ, Sweeney T, Mukhopadhya A, O'Shea CJ, O'Doherty JV.

Animal. 2017 Sep;11(9):1488-1496. doi: 10.1017/S1751731117000118. Epub 2017 Feb 13.


Bronchiectasis Rheumatoid Overlap Syndrome Is an Independent Risk Factor for Mortality in Patients With Bronchiectasis: A Multicenter Cohort Study.

De Soyza A, McDonnell MJ, Goeminne PC, Aliberti S, Lonni S, Davison J, Dupont LJ, Fardon TC, Rutherford RM, Hill AT, Chalmers JD.

Chest. 2017 Jun;151(6):1247-1254. doi: 10.1016/j.chest.2016.12.024. Epub 2017 Jan 16.


Predictive value of C-reactive protein and clinically relevant baseline variables in sarcoidosis.

McDonnell MJ, Saleem MI, Wall D, Gilmartin JJ, Rutherford RM, O'Regan A.

Sarcoidosis Vasc Diffuse Lung Dis. 2016 Dec 23;33(4):331-340.


Comorbidities and the risk of mortality in patients with bronchiectasis: an international multicentre cohort study.

McDonnell MJ, Aliberti S, Goeminne PC, Restrepo MI, Finch S, Pesci A, Dupont LJ, Fardon TC, Wilson R, Loebinger MR, Skrbic D, Obradovic D, De Soyza A, Ward C, Laffey JG, Rutherford RM, Chalmers JD.

Lancet Respir Med. 2016 Dec;4(12):969-979. doi: 10.1016/S2213-2600(16)30320-4. Epub 2016 Nov 16.


High prevalence of stress urinary incontinence in adult patients with bronchiectasis.

Duignan N, McDonnell MJ, Mokoka MC, Rutherford RM.

Ir Med J. 2016 Aug 8;109(7):440.


Characterization of bronchiectasis in the elderly.

Bellelli G, Chalmers JD, Sotgiu G, Dore S, McDonnell MJ, Goeminne PC, Dimakou K, Skrbic D, Lombi A, Pane F, Obradovic D, Fardon TC, Rutherford RM, Pesci A, Aliberti S.

Respir Med. 2016 Oct;119:13-19. doi: 10.1016/j.rmed.2016.08.008. Epub 2016 Aug 17.


Multidimensional severity assessment in bronchiectasis: an analysis of seven European cohorts.

McDonnell MJ, Aliberti S, Goeminne PC, Dimakou K, Zucchetti SC, Davidson J, Ward C, Laffey JG, Finch S, Pesci A, Dupont LJ, Fardon TC, Skrbic D, Obradovic D, Cowman S, Loebinger MR, Rutherford RM, De Soyza A, Chalmers JD.

Thorax. 2016 Dec;71(12):1110-1118. doi: 10.1136/thoraxjnl-2016-208481. Epub 2016 Aug 11.


The ecological future of cities.

McDonnell MJ, MacGregor-Fors I.

Science. 2016 May 20;352(6288):936-8. doi: 10.1126/science.aaf3630. Review.


The generalizability of bronchiectasis randomized controlled trials: A multicentre cohort study.

Chalmers JD, McDonnell MJ, Rutherford R, Davidson J, Finch S, Crichton M, Dupont L, Hill AT, Fardon TC, De Soyza A, Aliberti S, Goeminne P.

Respir Med. 2016 Mar;112:51-8. doi: 10.1016/j.rmed.2016.01.016. Epub 2016 Jan 29.


Clinical phenotypes in adult patients with bronchiectasis.

Aliberti S, Lonni S, Dore S, McDonnell MJ, Goeminne PC, Dimakou K, Fardon TC, Rutherford R, Pesci A, Restrepo MI, Sotgiu G, Chalmers JD.

Eur Respir J. 2016 Apr;47(4):1113-22. doi: 10.1183/13993003.01899-2015. Epub 2016 Feb 4.


Pulse oximetry in general practice: an underutilised assessment tool.

Ryan D, Nestor S, McDonnell MJ, Rutherford RM.

QJM. 2016 Dec;109(12):775-776. doi: 10.1093/qjmed/hcw006. Epub 2016 Jan 27. No abstract available.


Etiology of Non-Cystic Fibrosis Bronchiectasis in Adults and Its Correlation to Disease Severity.

Lonni S, Chalmers JD, Goeminne PC, McDonnell MJ, Dimakou K, De Soyza A, Polverino E, Van de Kerkhove C, Rutherford R, Davison J, Rosales E, Pesci A, Restrepo MI, Torres A, Aliberti S.

Ann Am Thorac Soc. 2015 Dec;12(12):1764-70. doi: 10.1513/AnnalsATS.201507-472OC.


A Comprehensive Analysis of the Impact of Pseudomonas aeruginosa Colonization on Prognosis in Adult Bronchiectasis.

Finch S, McDonnell MJ, Abo-Leyah H, Aliberti S, Chalmers JD.

Ann Am Thorac Soc. 2015 Nov;12(11):1602-11. doi: 10.1513/AnnalsATS.201506-333OC. Review.


Hiatal hernias are correlated with increased severity of non-cystic fibrosis bronchiectasis.

McDonnell MJ, Ahmed M, Das J, Ward C, Mokoka M, Breen DP, O'Regan A, Gilmartin JJ, Bruzzi J, Rutherford RM.

Respirology. 2015 Jul;20(5):749-57. doi: 10.1111/resp.12522. Epub 2015 Apr 14.


Non cystic fibrosis bronchiectasis: A longitudinal retrospective observational cohort study of Pseudomonas persistence and resistance.

McDonnell MJ, Jary HR, Perry A, MacFarlane JG, Hester KL, Small T, Molyneux C, Perry JD, Walton KE, De Soyza A.

Respir Med. 2015 Jun;109(6):716-26. doi: 10.1016/j.rmed.2014.07.021. Epub 2014 Aug 29.


Lack of association between KIR and HLA-C type and susceptibility to idiopathic bronchiectasis.

McDonnell MJ, Anwar GA, Rutherford RM, De Soyza A, Worthy S, Corris PA, Lordan JL, Bourke S, Afolabi G, Ward C, Middleton P, Middleton D.

Respir Med. 2014 Aug;108(8):1127-33. doi: 10.1016/j.rmed.2014.05.017. Epub 2014 Jun 18.


Sarcoidosis complicating treatment with adalimumab for Crohn's disease.

McDonnell MJ, Rutherford RM, O'Regan A.

J Crohns Colitis. 2014 Sep;8(9):1140-1. doi: 10.1016/j.crohns.2014.02.006. Epub 2014 Mar 13. No abstract available.


The bronchiectasis severity index. An international derivation and validation study.

Chalmers JD, Goeminne P, Aliberti S, McDonnell MJ, Lonni S, Davidson J, Poppelwell L, Salih W, Pesci A, Dupont LJ, Fardon TC, De Soyza A, Hill AT.

Am J Respir Crit Care Med. 2014 Mar 1;189(5):576-85. doi: 10.1164/rccm.201309-1575OC.


Pulmonary alveolar proteinosis: report of two cases in the West of Ireland with review of current literature.

McDonnell MJ, Reynolds C, Tormey V, Gilmartin JJ, Rutherford RM.

Ir J Med Sci. 2014 Mar;183(1):123-7. doi: 10.1007/s11845-013-0976-0. Epub 2013 Jun 8. Review.


Non-cystic fibrosis bronchiectasis.

McDonnell MJ, Ward C, Lordan JL, Rutherford RM.

QJM. 2013 Aug;106(8):709-15. doi: 10.1093/qjmed/hct109. Epub 2013 May 30. Review.


An unusual cause of haemoptysis in a smoker.

McDonnell MJ, Garvey J, Lohan DG, O'Sullivan GJ, Redmond K, Jackson JE, Rutherford RM.

Thorax. 2014 Jan;69(1):93, 99-100. doi: 10.1136/thoraxjnl-2013-203476. Epub 2013 May 24. No abstract available.


Phenotyping adults with non-cystic fibrosis bronchiectasis: a prospective observational cohort study.

Anwar GA, McDonnell MJ, Worthy SA, Bourke SC, Afolabi G, Lordan J, Corris PA, DeSoyza A, Middleton P, Ward C, Rutherford RM.

Respir Med. 2013 Jul;107(7):1001-7. doi: 10.1016/j.rmed.2013.04.013. Epub 2013 May 11.


Solitary fibrous tumours of the pleura: report of two cases and literature review.

McDonnell MJ, Hynes S, Connolly C, Gilmartin JJ, Rutherford RM.

Ir J Med Sci. 2013 Dec;182(4):729-33. doi: 10.1007/s11845-013-0952-8. Epub 2013 Apr 23. Review.


Evaluation of carvacrol for the control of Escherichia coli O157 on cattle hide and carcass cuts.

McDonnell MJ, Rivas L, Burgess CM, Fanning S, Duffy G.

Foodborne Pathog Dis. 2012 Nov;9(11):1049-52. doi: 10.1089/fpd.2012.1224. Epub 2012 Oct 15.


Exposing an urban ecology straw man: critique of Ramalho and Hobbs.

McDonnell MJ, Hahs AK, Pickett ST.

Trends Ecol Evol. 2012 May;27(5):255-6; author reply 256-7. doi: 10.1016/j.tree.2012.01.009. Epub 2012 Feb 8. No abstract available.


Inhibition of verocytotoxigenic Escherichia coli by antimicrobial peptides caseicin A and B and the factors affecting their antimicrobial activities.

McDonnell MJ, Rivas L, Burgess CM, Fanning S, Duffy G.

Int J Food Microbiol. 2012 Feb 15;153(3):260-8. doi: 10.1016/j.ijfoodmicro.2011.10.001. Epub 2011 Oct 8.


In vivo and ex vivo evaluations of bacteriophages e11/2 and e4/1c for use in the control of Escherichia coli O157:H7.

Rivas L, Coffey B, McAuliffe O, McDonnell MJ, Burgess CM, Coffey A, Ross RP, Duffy G.

Appl Environ Microbiol. 2010 Nov;76(21):7210-6. doi: 10.1128/AEM.01530-10. Epub 2010 Sep 17.


Inhibition of verocytotoxigenic Escherichia coli in model broth and rumen systems by carvacrol and thymol.

Rivas L, McDonnell MJ, Burgess CM, O'Brien M, Navarro-Villa A, Fanning S, Duffy G.

Int J Food Microbiol. 2010 Apr 30;139(1-2):70-8. doi: 10.1016/j.ijfoodmicro.2010.01.029. Epub 2010 Jan 29.


A global synthesis of plant extinction rates in urban areas.

Hahs AK, McDonnell MJ, McCarthy MA, Vesk PA, Corlett RT, Norton BA, Clemants SE, Duncan RP, Thompson K, Schwartz MW, Williams NS.

Ecol Lett. 2009 Nov;12(11):1165-73. doi: 10.1111/j.1461-0248.2009.01372.x. Epub 2009 Aug 31.


Long-lived mesoscopic entanglement outside the Lamb-Dicke regime.

McDonnell MJ, Home JP, Lucas DM, Imreh G, Keitch BC, Szwer DJ, Thomas NR, Webster SC, Stacey DN, Steane AM.

Phys Rev Lett. 2007 Feb 9;98(6):063603. Epub 2007 Feb 7.


Local extinction of grassland plants: the landscape matrix is more important than patch attributes.

Williams NS, Morgan JW, McCarthy MA, McDonnell MJ.

Ecology. 2006 Dec;87(12):3000-6.


High-efficiency detection of a single quantum of angular momentum by suppression of optical pumping.

McDonnell MJ, Stacey JP, Webster SC, Home JP, Ramos A, Lucas DM, Stacey DN, Steane AM.

Phys Rev Lett. 2004 Oct 8;93(15):153601. Epub 2004 Oct 4.


Oxford ion-trap quantum computing project.

Lucas DM, Donald CJ, Home JP, McDonnell MJ, Ramos A, Stacey DN, Stacey JP, Steane AM, Webster SC.

Philos Trans A Math Phys Eng Sci. 2003 Jul 15;361(1808):1401-8.


Changing perspectives in community dynamics: A reply to Waters.

Pickett ST, McDonnell MJ.

Trends Ecol Evol. 1990 Apr;5(4):123-4. doi: 10.1016/0169-5347(90)90168-D. No abstract available.


Changing perspectives in community dynamics: A theory of successional forces.

Pickett ST, McDonnell MJ.

Trends Ecol Evol. 1989 Aug;4(8):241-5. doi: 10.1016/0169-5347(89)90170-5.


Nuclear magnetic resonance imaging of posterior fossa tumors.

Randell CP, Collins AG, Young IR, Haywood R, Thomas DJ, McDonnell MJ, Orr JS, Bydder GM, Steiner RE.

AJR Am J Roentgenol. 1983 Sep;141(3):489-96.


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