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Items: 1 to 50 of 137

1.

Effect of environmental salt concentration on the Helicobacter pylori exoproteome.

Caston RR, Loh JT, Voss BJ, McDonald WH, Scholz MB, McClain MS, Cover TL.

J Proteomics. 2019 Jun 30;202:103374. doi: 10.1016/j.jprot.2019.05.002. Epub 2019 May 4.

PMID:
31063819
2.

The in vivo specificity of synaptic Gβ and Gγ subunits to the α2a adrenergic receptor at CNS synapses.

Yim YY, Betke KM, McDonald WH, Gilsbach R, Chen Y, Hyde K, Wang Q, Hein L, Hamm H.

Sci Rep. 2019 Feb 8;9(1):1718. doi: 10.1038/s41598-018-37222-1.

3.

Publisher Correction: Exocyst dynamics during vesicle tethering and fusion.

Ahmed SM, Nishida-Fukuda H, Li Y, McDonald WH, Gradinaru CC, Macara IG.

Nat Commun. 2019 Jan 15;10(1):326. doi: 10.1038/s41467-019-08322-x.

4.

The PathLink Acquired Gestational Tissue Bank: Feasibility of Project PLACENTA.

Linder JE, Batey K, Johnston R, Cohen EM, Wang Y, Wang X, Zaleski NM, Rogers LM, McDonald WH, Reyzer ML, Judd A, Goldstein J, Correa H, Pulley J, Aronoff DM.

J Reprod Biotechnol Fertil. 2018;7:14-27.

5.

Exocyst dynamics during vesicle tethering and fusion.

Ahmed SM, Nishida-Fukuda H, Li Y, McDonald WH, Gradinaru CC, Macara IG.

Nat Commun. 2018 Dec 3;9(1):5140. doi: 10.1038/s41467-018-07467-5. Erratum in: Nat Commun. 2019 Jan 15;10(1):326.

6.

Negative regulation of Candida glabrata Pdr1 by the deubiquitinase subunit Bre5 occurs in a ubiquitin independent manner.

Paul S, McDonald WH, Moye-Rowley WS.

Mol Microbiol. 2018 Oct;110(2):309-323. doi: 10.1111/mmi.14109. Epub 2018 Sep 30.

7.

Novel Method for Noninvasive Sampling of the Distal Airspace in Acute Respiratory Distress Syndrome.

McNeil JB, Shaver CM, Kerchberger VE, Russell DW, Grove BS, Warren MA, Wickersham NE, Ware LB, McDonald WH, Bastarache JA.

Am J Respir Crit Care Med. 2018 Apr 15;197(8):1027-1035. doi: 10.1164/rccm.201707-1474OC.

8.

Ubiquitin turnover and endocytic trafficking in yeast are regulated by Ser57 phosphorylation of ubiquitin.

Lee S, Tumolo JM, Ehlinger AC, Jernigan KK, Qualls-Histed SJ, Hsu PC, McDonald WH, Chazin WJ, MacGurn JA.

Elife. 2017 Nov 13;6. pii: e29176. doi: 10.7554/eLife.29176.

9.

Quantitative Multiple-Reaction Monitoring Proteomic Analysis of Gβ and Gγ Subunits in C57Bl6/J Brain Synaptosomes.

Yim YY, McDonald WH, Hyde K, Cruz-Rodríguez O, Tesmer JJG, Hamm HE.

Biochemistry. 2017 Oct 10;56(40):5405-5416. doi: 10.1021/acs.biochem.7b00433. Epub 2017 Sep 21.

10.

Chromosomal abnormalities and molecular landscape of metastasizing mucinous salivary adenocarcinoma.

Panaccione A, Zhang Y, Mi Y, Mitani Y, Yan G, Prasad ML, McDonald WH, El-Naggar AK, Yarbrough WG, Ivanov SV.

Oral Oncol. 2017 Mar;66:38-45. doi: 10.1016/j.oraloncology.2016.12.011. Epub 2017 Jan 9.

11.

In vivo mapping of a dynamic ribonucleoprotein granule interactome in early Drosophila embryos.

Zheng J, Gao M, Huynh N, Tindell SJ, Vo HD, McDonald WH, Arkov AL.

FEBS Open Bio. 2016 Oct 25;6(12):1248-1256. doi: 10.1002/2211-5463.12144. eCollection 2016 Dec.

12.

Oral colostrum priming shortens hospitalization without changing the immunomicrobial milieu.

Romano-Keeler J, Azcarate-Peril MA, Weitkamp JH, Slaughter JC, McDonald WH, Meng S, Latuga MS, Wynn JL.

J Perinatol. 2017 Jan;37(1):36-41. doi: 10.1038/jp.2016.161. Epub 2016 Sep 29.

13.

Spatially Directed Proteomics of the Human Lens Outer Cortex Reveals an Intermediate Filament Switch Associated With the Remodeling Zone.

Wenke JL, McDonald WH, Schey KL.

Invest Ophthalmol Vis Sci. 2016 Aug 1;57(10):4108-14. doi: 10.1167/iovs.16-19791.

14.

Accumulation of isolevuglandin-modified protein in normal and fibrotic lung.

Mont S, Davies SS, Roberts Second LJ, Mernaugh RL, McDonald WH, Segal BH, Zackert W, Kropski JA, Blackwell TS, Sekhar KR, Galligan JJ, Massion PP, Marnett LJ, Travis EL, Freeman ML.

Sci Rep. 2016 Apr 27;6:24919. doi: 10.1038/srep24919.

15.

Supporting data for analysis of the Helicobacter pylori exoproteome.

Snider CA, Voss BJ, McDonald WH, Cover TL.

Data Brief. 2015 Oct 17;5:560-3. doi: 10.1016/j.dib.2015.10.008. eCollection 2015 Dec.

16.

Antagonistic roles for the ubiquitin ligase Asr1 and the ubiquitin-specific protease Ubp3 in subtelomeric gene silencing.

McCann TS, Guo Y, McDonald WH, Tansey WP.

Proc Natl Acad Sci U S A. 2016 Feb 2;113(5):1309-14. doi: 10.1073/pnas.1518375113. Epub 2016 Jan 19.

17.

Molecular and Structural Analysis of the Helicobacter pylori cag Type IV Secretion System Core Complex.

Frick-Cheng AE, Pyburn TM, Voss BJ, McDonald WH, Ohi MD, Cover TL.

MBio. 2016 Jan 12;7(1):e02001-15. doi: 10.1128/mBio.02001-15.

18.

Binding of the Covalent Flavin Assembly Factor to the Flavoprotein Subunit of Complex II.

Maklashina E, Rajagukguk S, Starbird CA, McDonald WH, Koganitsky A, Eisenbach M, Iverson TM, Cecchini G.

J Biol Chem. 2016 Feb 5;291(6):2904-16. doi: 10.1074/jbc.M115.690396. Epub 2015 Dec 7.

19.

LMO2 Oncoprotein Stability in T-Cell Leukemia Requires Direct LDB1 Binding.

Layer JH, Alford CE, McDonald WH, Davé UP.

Mol Cell Biol. 2015 Nov 23;36(3):488-506. doi: 10.1128/MCB.00901-15. Print 2016 Feb 1.

20.

Growth phase-dependent composition of the Helicobacter pylori exoproteome.

Snider CA, Voss BJ, McDonald WH, Cover TL.

J Proteomics. 2016 Jan 1;130:94-107. doi: 10.1016/j.jprot.2015.08.025. Epub 2015 Sep 9.

21.

Alteration of the Helicobacter pylori membrane proteome in response to changes in environmental salt concentration.

Voss BJ, Loh JT, Hill S, Rose KL, McDonald WH, Cover TL.

Proteomics Clin Appl. 2015 Dec;9(11-12):1021-34. doi: 10.1002/prca.201400176. Epub 2015 Sep 14.

22.

Iron Toxicity in the Retina Requires Alu RNA and the NLRP3 Inflammasome.

Gelfand BD, Wright CB, Kim Y, Yasuma T, Yasuma R, Li S, Fowler BJ, Bastos-Carvalho A, Kerur N, Uittenbogaard A, Han YS, Lou D, Kleinman ME, McDonald WH, Núñez G, Georgel P, Dunaief JL, Ambati J.

Cell Rep. 2015 Jun 23;11(11):1686-93. doi: 10.1016/j.celrep.2015.05.023. Epub 2015 Jun 11.

23.

P-REX1 creates a positive feedback loop to activate growth factor receptor, PI3K/AKT and MEK/ERK signaling in breast cancer.

Dillon LM, Bean JR, Yang W, Shee K, Symonds LK, Balko JM, McDonald WH, Liu S, Gonzalez-Angulo AM, Mills GB, Arteaga CL, Miller TW.

Oncogene. 2015 Jul 23;34(30):3968-76. doi: 10.1038/onc.2014.328. Epub 2014 Oct 6.

24.

Short forms of Ste20-related proline/alanine-rich kinase (SPAK) in the kidney are created by aspartyl aminopeptidase (Dnpep)-mediated proteolytic cleavage.

Markadieu N, Rios K, Spiller BW, McDonald WH, Welling PA, Delpire E.

J Biol Chem. 2014 Oct 17;289(42):29273-84. doi: 10.1074/jbc.M114.604009. Epub 2014 Aug 27.

25.

Shotgun proteomics: identification of unique protein profiles of apoptotic bodies from biliary epithelial cells.

Lleo A, Zhang W, McDonald WH, Seeley EH, Leung PS, Coppel RL, Ansari AA, Adams DH, Afford S, Invernizzi P, Gershwin ME.

Hepatology. 2014 Oct;60(4):1314-23. doi: 10.1002/hep.27230. Epub 2014 Jul 31.

26.

Analysis of surface-exposed outer membrane proteins in Helicobacter pylori.

Voss BJ, Gaddy JA, McDonald WH, Cover TL.

J Bacteriol. 2014 Jul;196(13):2455-71. doi: 10.1128/JB.01768-14. Epub 2014 Apr 25.

27.

Sepp1(UF) forms are N-terminal selenoprotein P truncations that have peroxidase activity when coupled with thioredoxin reductase-1.

Kurokawa S, Eriksson S, Rose KL, Wu S, Motley AK, Hill S, Winfrey VP, McDonald WH, Capecchi MR, Atkins JF, Arnér ES, Hill KE, Burk RF.

Free Radic Biol Med. 2014 Apr;69:67-76. doi: 10.1016/j.freeradbiomed.2014.01.010. Epub 2014 Jan 14.

28.

A unique covalent bond in basement membrane is a primordial innovation for tissue evolution.

Fidler AL, Vanacore RM, Chetyrkin SV, Pedchenko VK, Bhave G, Yin VP, Stothers CL, Rose KL, McDonald WH, Clark TA, Borza DB, Steele RE, Ivy MT; Aspirnauts, Hudson JK, Hudson BG.

Proc Natl Acad Sci U S A. 2014 Jan 7;111(1):331-6. doi: 10.1073/pnas.1318499111. Epub 2013 Dec 16.

29.

Global phosphotyrosine proteomics identifies PKCδ as a marker of responsiveness to Src inhibition in colorectal cancer.

McKinley ET, Liu H, McDonald WH, Luo W, Zhao P, Coffey RJ, Hanks SK, Manning HC.

PLoS One. 2013 Nov 8;8(11):e80207. doi: 10.1371/journal.pone.0080207. eCollection 2013.

30.

Proteome informatics research group (iPRG)_2012: a study on detecting modified peptides in a complex mixture.

Chalkley RJ, Bandeira N, Chambers MC, Clauser KR, Cottrell JS, Deutsch EW, Kapp EA, Lam HH, McDonald WH, Neubert TA, Sun RX.

Mol Cell Proteomics. 2014 Jan;13(1):360-71. doi: 10.1074/mcp.M113.032813. Epub 2013 Oct 31.

31.

Identification of proteins at active, stalled, and collapsed replication forks using isolation of proteins on nascent DNA (iPOND) coupled with mass spectrometry.

Sirbu BM, McDonald WH, Dungrawala H, Badu-Nkansah A, Kavanaugh GM, Chen Y, Tabb DL, Cortez D.

J Biol Chem. 2013 Nov 1;288(44):31458-67. doi: 10.1074/jbc.M113.511337. Epub 2013 Sep 18.

32.

Staphylococcus aureus LukAB cytotoxin kills human neutrophils by targeting the CD11b subunit of the integrin Mac-1.

DuMont AL, Yoong P, Day CJ, Alonzo F 3rd, McDonald WH, Jennings MP, Torres VJ.

Proc Natl Acad Sci U S A. 2013 Jun 25;110(26):10794-9. doi: 10.1073/pnas.1305121110. Epub 2013 Jun 10.

33.

Electrophilic adduction of ubiquitin activating enzyme E1 by N,N-diethyldithiocarbamate inhibits ubiquitin activation and is accompanied by striatal injury in the rat.

Viquez OM, Caito SW, McDonald WH, Friedman DB, Valentine WM.

Chem Res Toxicol. 2012 Nov 19;25(11):2310-21. doi: 10.1021/tx300198h. Epub 2012 Aug 22.

34.

Dnt1 acts as a mitotic inhibitor of the spindle checkpoint protein dma1 in fission yeast.

Wang Y, Li WZ, Johnson AE, Luo ZQ, Sun XL, Feoktistova A, McDonald WH, McLeod I, Yates JR 3rd, Gould KL, McCollum D, Jin QW.

Mol Biol Cell. 2012 Sep;23(17):3348-56. doi: 10.1091/mbc.E11-12-1020. Epub 2012 Jul 18.

35.

The evolutionary imprint of domestication on genome variation and function of the filamentous fungus Aspergillus oryzae.

Gibbons JG, Salichos L, Slot JC, Rinker DC, McGary KL, King JG, Klich MA, Tabb DL, McDonald WH, Rokas A.

Curr Biol. 2012 Aug 7;22(15):1403-9. doi: 10.1016/j.cub.2012.05.033. Epub 2012 Jul 12.

36.

Long isoform mouse selenoprotein P (Sepp1) supplies rat myoblast L8 cells with selenium via endocytosis mediated by heparin binding properties and apolipoprotein E receptor-2 (ApoER2).

Kurokawa S, Hill KE, McDonald WH, Burk RF.

J Biol Chem. 2012 Aug 17;287(34):28717-26. doi: 10.1074/jbc.M112.383521. Epub 2012 Jul 2.

37.

Azospirillum genomes reveal transition of bacteria from aquatic to terrestrial environments.

Wisniewski-Dyé F, Borziak K, Khalsa-Moyers G, Alexandre G, Sukharnikov LO, Wuichet K, Hurst GB, McDonald WH, Robertson JS, Barbe V, Calteau A, Rouy Z, Mangenot S, Prigent-Combaret C, Normand P, Boyer M, Siguier P, Dessaux Y, Elmerich C, Condemine G, Krishnen G, Kennedy I, Paterson AH, González V, Mavingui P, Zhulin IB.

PLoS Genet. 2011 Dec;7(12):e1002430. doi: 10.1371/journal.pgen.1002430. Epub 2011 Dec 22.

38.

Obesity and altered glucose metabolism impact HDL composition in CETP transgenic mice: a role for ovarian hormones.

Martinez MN, Emfinger CH, Overton M, Hill S, Ramaswamy TS, Cappel DA, Wu K, Fazio S, McDonald WH, Hachey DL, Tabb DL, Stafford JM.

J Lipid Res. 2012 Mar;53(3):379-89. doi: 10.1194/jlr.M019752. Epub 2012 Jan 3.

39.

Helicobacter pylori exploits a unique repertoire of type IV secretion system components for pilus assembly at the bacteria-host cell interface.

Shaffer CL, Gaddy JA, Loh JT, Johnson EM, Hill S, Hennig EE, McClain MS, McDonald WH, Cover TL.

PLoS Pathog. 2011 Sep;7(9):e1002237. doi: 10.1371/journal.ppat.1002237. Epub 2011 Sep 1.

40.

The novel chemical entity YTR107 inhibits recruitment of nucleophosmin to sites of DNA damage, suppressing repair of DNA double-strand breaks and enhancing radiosensitization.

Sekhar KR, Reddy YT, Reddy PN, Crooks PA, Venkateswaran A, McDonald WH, Geng L, Sasi S, Van Der Waal RP, Roti JL, Salleng KJ, Rachakonda G, Freeman ML.

Clin Cancer Res. 2011 Oct 15;17(20):6490-9. doi: 10.1158/1078-0432.CCR-11-1054. Epub 2011 Aug 30.

41.

Characterization of the MDSC proteome associated with metastatic murine mammary tumors using label-free mass spectrometry and shotgun proteomics.

Boutté AM, McDonald WH, Shyr Y, Yang L, Lin PC.

PLoS One. 2011;6(8):e22446. doi: 10.1371/journal.pone.0022446. Epub 2011 Aug 10.

42.

Glucose autoxidation induces functional damage to proteins via modification of critical arginine residues.

Chetyrkin S, Mathis M, Pedchenko V, Sanchez OA, McDonald WH, Hachey DL, Madu H, Stec D, Hudson B, Voziyan P.

Biochemistry. 2011 Jul 12;50(27):6102-12. doi: 10.1021/bi200757d. Epub 2011 Jun 20.

43.

Bacillus cereus phosphopentomutase is an alkaline phosphatase family member that exhibits an altered entry point into the catalytic cycle.

Panosian TD, Nannemann DP, Watkins GR, Phelan VV, McDonald WH, Wadzinski BE, Bachmann BO, Iverson TM.

J Biol Chem. 2011 Mar 11;286(10):8043-54. doi: 10.1074/jbc.M110.201350. Epub 2010 Dec 30.

44.

Geometric restraint drives on- and off-pathway catalysis by the Escherichia coli menaquinol:fumarate reductase.

Tomasiak TM, Archuleta TL, Andréll J, Luna-Chávez C, Davis TA, Sarwar M, Ham AJ, McDonald WH, Yankovskaya V, Stern HA, Johnston JN, Maklashina E, Cecchini G, Iverson TM.

J Biol Chem. 2011 Jan 28;286(4):3047-56. doi: 10.1074/jbc.M110.192849. Epub 2010 Nov 23.

45.

Dephosphorylation of F-BAR protein Cdc15 modulates its conformation and stimulates its scaffolding activity at the cell division site.

Roberts-Galbraith RH, Ohi MD, Ballif BA, Chen JS, McLeod I, McDonald WH, Gygi SP, Yates JR 3rd, Gould KL.

Mol Cell. 2010 Jul 9;39(1):86-99. doi: 10.1016/j.molcel.2010.06.012.

46.

A high-throughput de novo sequencing approach for shotgun proteomics using high-resolution tandem mass spectrometry.

Pan C, Park BH, McDonald WH, Carey PA, Banfield JF, VerBerkmoes NC, Hettich RL, Samatova NF.

BMC Bioinformatics. 2010 Mar 5;11:118. doi: 10.1186/1471-2105-11-118.

47.

Staphylococcus aureus fur regulates the expression of virulence factors that contribute to the pathogenesis of pneumonia.

Torres VJ, Attia AS, Mason WJ, Hood MI, Corbin BD, Beasley FC, Anderson KL, Stauff DL, McDonald WH, Zimmerman LJ, Friedman DB, Heinrichs DE, Dunman PM, Skaar EP.

Infect Immun. 2010 Apr;78(4):1618-28. doi: 10.1128/IAI.01423-09. Epub 2010 Jan 25.

48.

An analysis pipeline for the inference of protein-protein interaction networks.

Taylor RC, Singhal M, Daly DS, Gilmore J, Cannon WR, Domico K, White AM, Auberry DL, Auberry KJ, Hooker BS, Hurst G, McDermott JE, McDonald WH, Pelletier DA, Schmoyer D, Wiley HS.

Int J Data Min Bioinform. 2009;3(4):409-30.

PMID:
20052905
49.

Evaluation of affinity-tagged protein expression strategies using local and global isotope ratio measurements.

Hervey WJ 4th, Khalsa-Moyers G, Lankford PK, Owens ET, McKeown CK, Lu TY, Foote LJ, Asano KG, Morrell-Falvey JL, McDonald WH, Pelletier DA, Hurst GB.

J Proteome Res. 2009 Jul;8(7):3675-88. doi: 10.1021/pr801088f.

PMID:
19459691
50.

Modulation of the structure, catalytic activity, and fidelity of African swine fever virus DNA polymerase X by a reversible disulfide switch.

Voehler MW, Eoff RL, McDonald WH, Guengerich FP, Stone MP.

J Biol Chem. 2009 Jul 3;284(27):18434-44. doi: 10.1074/jbc.M109.012542. Epub 2009 May 5.

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