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Role of RNase H enzymes in maintaining genome stability in Escherichia coli expressing a steric-gate mutant of pol VICE391.

Walsh E, Henrikus SS, Vaisman A, Makiela-Dzbenska K, Armstrong TJ, Łazowski K, McDonald JP, Goodman MF, van Oijen AM, Jonczyk P, Fijalkowska IJ, Robinson A, Woodgate R.

DNA Repair (Amst). 2019 Dec;84:102685. doi: 10.1016/j.dnarep.2019.102685. Epub 2019 Aug 10.


Challenges in Implementing Optimal Echocardiographic Screening in Cardio-Oncology.

McDonald JP, MacNamara JP, Zaha VG.

Curr Treat Options Cardiovasc Med. 2019 Jul 10;21(8):39. doi: 10.1007/s11936-019-0740-5. Review.


DNA polymerase η contributes to genome-wide lagging strand synthesis.

Kreisel K, Engqvist MKM, Kalm J, Thompson LJ, Boström M, Navarrete C, McDonald JP, Larsson E, Woodgate R, Clausen AR.

Nucleic Acids Res. 2019 Mar 18;47(5):2425-2435. doi: 10.1093/nar/gky1291.


SetRICE391, a negative transcriptional regulator of the integrating conjugative element 391 mutagenic response.

Gonzalez M, Huston D, McLenigan MP, McDonald JP, Garcia AM, Borden KS, Woodgate R.

DNA Repair (Amst). 2019 Jan;73:99-109. doi: 10.1016/j.dnarep.2018.11.007. Epub 2018 Nov 16.


DNA polymerase IV primarily operates outside of DNA replication forks in Escherichia coli.

Henrikus SS, Wood EA, McDonald JP, Cox MM, Woodgate R, Goodman MF, van Oijen AM, Robinson A.

PLoS Genet. 2018 Jan 19;14(1):e1007161. doi: 10.1371/journal.pgen.1007161. eCollection 2018 Jan.


DNA polymerase ι: The long and the short of it!

Frank EG, McLenigan MP, McDonald JP, Huston D, Mead S, Woodgate R.

DNA Repair (Amst). 2017 Oct;58:47-51. doi: 10.1016/j.dnarep.2017.08.006. Epub 2017 Aug 19.


Mouse DNA polymerase ι lacking the forty-two amino acids encoded by exon-2 is catalytically inactive in vitro.

Frank EG, McDonald JP, Yang W, Woodgate R.

DNA Repair (Amst). 2017 Feb;50:71-76. doi: 10.1016/j.dnarep.2016.12.004. Epub 2016 Dec 21.


Insights into the complex levels of regulation imposed on Escherichia coli DNA polymerase V.

Goodman MF, McDonald JP, Jaszczur MM, Woodgate R.

DNA Repair (Amst). 2016 Aug;44:42-50. doi: 10.1016/j.dnarep.2016.05.005. Epub 2016 May 13. Review.


Does rapid maxillary expansion affect nasopharyngeal airway? A prospective Cone Beam Computerised Tomography (CBCT) based study.

Almuzian M, Ju X, Almukhtar A, Ayoub A, Al-Muzian L, McDonald JP.

Surgeon. 2018 Feb;16(1):1-11. doi: 10.1016/j.surge.2015.12.006. Epub 2016 Jan 28.


Beyond Respiratory Depression and Constipation: Adverse Effects of Opioids.

Mcdonald JP, Torrey AJ, Mehta MP, Delima LG.

J Miss State Med Assoc. 2015 Jul;56(7):193-5.


Unlocking the steric gate of DNA polymerase η leads to increased genomic instability in Saccharomyces cerevisiae.

Donigan KA, Cerritelli SM, McDonald JP, Vaisman A, Crouch RJ, Woodgate R.

DNA Repair (Amst). 2015 Nov;35:1-12. doi: 10.1016/j.dnarep.2015.07.002. Epub 2015 Aug 7.


Regulation of Mutagenic DNA Polymerase V Activation in Space and Time.

Robinson A, McDonald JP, Caldas VE, Patel M, Wood EA, Punter CM, Ghodke H, Cox MM, Woodgate R, Goodman MF, van Oijen AM.

PLoS Genet. 2015 Aug 28;11(8):e1005482. doi: 10.1371/journal.pgen.1005482. eCollection 2015 Aug.


Dynamic alterations of the tongue in obstructive sleep apnea-hypopnea syndrome during sleep: analysis using ultrafast MRI.

Wang Y, Mcdonald JP, Liu Y, Pan K, Zhang X, Hu R.

Genet Mol Res. 2014 Jun 17;13(2):4552-63. doi: 10.4238/2014.June.17.7.


Immediate effects of rapid maxillary expansion on the naso-maxillary facial soft tissue using 3D stereophotogrammetry.

Altorkat Y, Khambay BS, McDonald JP, Cross DL, Brocklebank LM, Ju X.

Surgeon. 2016 Apr;14(2):63-8. doi: 10.1016/j.surge.2014.04.005. Epub 2014 Jun 16.


Analysis of the dynamic changes in the soft palate and uvula in obstructive sleep apnea-hypopnea using ultrafast magnetic resonance imaging.

Wang YL, Mcdonald JP, Liu YH, Pan KF, Zhang XH, Hu RD.

Genet Mol Res. 2014 Jan 24;13(4):8596-608. doi: 10.4238/2014.January.24.16.


Investigating the mechanisms of ribonucleotide excision repair in Escherichia coli.

Vaisman A, McDonald JP, Noll S, Huston D, Loeb G, Goodman MF, Woodgate R.

Mutat Res. 2014 Mar;761:21-33. doi: 10.1016/j.mrfmmm.2014.01.005. Epub 2014 Feb 1.


The novel use of three-dimensional surface models to quantify and visualise the immediate changes of the mid-facial skeleton following rapid maxillary expansion.

Ong SC, Khambay BS, McDonald JP, Cross DL, Brocklebank LM, Ju X.

Surgeon. 2015 Jun;13(3):132-8. doi: 10.1016/j.surge.2013.10.012. Epub 2013 Dec 8.


Removal of misincorporated ribonucleotides from prokaryotic genomes: an unexpected role for nucleotide excision repair.

Vaisman A, McDonald JP, Huston D, Kuban W, Liu L, Van Houten B, Woodgate R.

PLoS Genet. 2013 Nov;9(11):e1003878. doi: 10.1371/journal.pgen.1003878. Epub 2013 Nov 7.


Accommodative movements of the vitreous membrane, choroid, and sclera in young and presbyopic human and nonhuman primate eyes.

Croft MA, Nork TM, McDonald JP, Katz A, Lütjen-Drecoll E, Kaufman PL.

Invest Ophthalmol Vis Sci. 2013 Jul 26;54(7):5049-58. doi: 10.1167/iovs.12-10847.


Extralenticular and lenticular aspects of accommodation and presbyopia in human versus monkey eyes.

Croft MA, McDonald JP, Katz A, Lin TL, Lütjen-Drecoll E, Kaufman PL.

Invest Ophthalmol Vis Sci. 2013 Jul 26;54(7):5035-48. doi: 10.1167/iovs.12-10846.


Ubiquitin mediates the physical and functional interaction between human DNA polymerases η and ι.

McIntyre J, Vidal AE, McLenigan MP, Bomar MG, Curti E, McDonald JP, Plosky BS, Ohashi E, Woodgate R.

Nucleic Acids Res. 2013 Feb 1;41(3):1649-60. doi: 10.1093/nar/gks1277. Epub 2012 Dec 16.


Mechanisms employed by Escherichia coli to prevent ribonucleotide incorporation into genomic DNA by Pol V.

McDonald JP, Vaisman A, Kuban W, Goodman MF, Woodgate R.

PLoS Genet. 2012;8(11):e1003030. doi: 10.1371/journal.pgen.1003030. Epub 2012 Nov 8.


Translesion DNA Synthesis.

Vaisman A, McDonald JP, Woodgate R.

EcoSal Plus. 2012 Nov;5(1). doi: 10.1128/ecosalplus.7.2.2.


A strategy for the expression of recombinant proteins traditionally hard to purify.

Frank EG, McDonald JP, Karata K, Huston D, Woodgate R.

Anal Biochem. 2012 Oct 15;429(2):132-9. doi: 10.1016/j.ab.2012.07.016. Epub 2012 Jul 22.


Escherichia coli UmuC active site mutants: effects on translesion DNA synthesis, mutagenesis and cell survival.

Kuban W, Vaisman A, McDonald JP, Karata K, Yang W, Goodman MF, Woodgate R.

DNA Repair (Amst). 2012 Sep 1;11(9):726-32. doi: 10.1016/j.dnarep.2012.06.005. Epub 2012 Jul 10.


Critical amino acids in Escherichia coli UmuC responsible for sugar discrimination and base-substitution fidelity.

Vaisman A, Kuban W, McDonald JP, Karata K, Yang W, Goodman MF, Woodgate R.

Nucleic Acids Res. 2012 Jul;40(13):6144-57. Epub 2012 Mar 15.


Root resorption before and after orthodontic treatment: a clinical study of contributory factors.

Jiang RP, McDonald JP, Fu MK.

Eur J Orthod. 2010 Dec;32(6):693-7. doi: 10.1093/ejo/cjp165. Epub 2010 Mar 22.


A real-time fluorescence method for enzymatic characterization of specialized human DNA polymerases.

Dorjsuren D, Wilson DM 3rd, Beard WA, McDonald JP, Austin CP, Woodgate R, Wilson SH, Simeonov A.

Nucleic Acids Res. 2009 Oct;37(19):e128. doi: 10.1093/nar/gkp641. Epub 2009 Aug 14.


Age-related changes in centripetal ciliary body movement relative to centripetal lens movement in monkeys.

Croft MA, McDonald JP, Nadkarni NV, Lin TL, Kaufman PL.

Exp Eye Res. 2009 Dec;89(6):824-32. doi: 10.1016/j.exer.2009.07.009. Epub 2009 Jul 25.


DNA polymerase switching: effects on spontaneous mutagenesis in Escherichia coli.

Curti E, McDonald JP, Mead S, Woodgate R.

Mol Microbiol. 2009 Jan;71(2):315-31. doi: 10.1111/j.1365-2958.2008.06526.x. Epub 2008 Nov 4.


Evaluation of craniofacial effects during rapid maxillary expansion through combined in vivo/in vitro and finite element studies.

Provatidis CG, Georgiopoulos B, Kotinas A, McDonald JP.

Eur J Orthod. 2008 Oct;30(5):437-48. doi: 10.1093/ejo/cjn046.


Surgical intervention and accommodative responses, I: centripetal ciliary body, capsule, and lens movements in rhesus monkeys of various ages.

Croft MA, McDonald JP, James RJ, Heatley GA, Lin TL, Lütjen-Drecoll E, Kaufman PL.

Invest Ophthalmol Vis Sci. 2008 Dec;49(12):5484-94. doi: 10.1167/iovs.08-1916. Epub 2008 Jun 14.


Surgical intervention and accommodative responses, II: forward ciliary body accommodative movement is facilitated by zonular attachments to the lens capsule.

Wasilewski R, McDonald JP, Heatley G, Lütjen-Drecoll E, Kaufman PL, Croft MA.

Invest Ophthalmol Vis Sci. 2008 Dec;49(12):5495-502. doi: 10.1167/iovs.08-1917. Epub 2008 Jun 14.


Eukaryotic Y-family polymerases bypass a 3-methyl-2'-deoxyadenosine analog in vitro and methyl methanesulfonate-induced DNA damage in vivo.

Plosky BS, Frank EG, Berry DA, Vennall GP, McDonald JP, Woodgate R.

Nucleic Acids Res. 2008 Apr;36(7):2152-62. doi: 10.1093/nar/gkn058. Epub 2008 Feb 14.


On the FEM modeling of craniofacial changes during rapid maxillary expansion.

Provatidis C, Georgiopoulos B, Kotinas A, McDonald JP.

Med Eng Phys. 2007 Jun;29(5):566-79. Epub 2007 Jan 22. Erratum in: Med Eng Phys. 2008 Apr;30(3):402.


Design and Development of a THOR Based Small Female Crash Test Dummy.

McDonald JP, Shams T, Rangarajan N, Beach D, Huang TJ, Freemire J, Artis M, Wang Y, Haffner M.

Stapp Car Crash J. 2003 Oct;47:551-70.


Controlling the subcellular localization of DNA polymerases iota and eta via interactions with ubiquitin.

Plosky BS, Vidal AE, Fernández de Henestrosa AR, McLenigan MP, McDonald JP, Mead S, Woodgate R.

EMBO J. 2006 Jun 21;25(12):2847-55. Epub 2006 Jun 8.


Novel thermostable Y-family polymerases: applications for the PCR amplification of damaged or ancient DNAs.

McDonald JP, Hall A, Gasparutto D, Cadet J, Ballantyne J, Woodgate R.

Nucleic Acids Res. 2006 Feb 18;34(4):1102-11. Print 2006.


Changes in natural head position observed immediately and one year after rapid maxillary expansion.

McGuinness NJ, McDonald JP.

Eur J Orthod. 2006 Apr;28(2):126-34. Epub 2005 Sep 12.


Clinical audit of subjects with snoring & sleep apnoea/hypopnoea syndrome fitted with mandibular repositioning splint.

Izci B, McDonald JP, Coleman EL, Mackay TW, Douglas NJ, Engleman HM.

Respir Med. 2005 Mar;99(3):337-46.


A review of surgical treatment for obstructive sleep apnoea/hypopnoea syndrome.

McDonald JP.

Surgeon. 2003 Oct;1(5):259-64. Review.


129-derived strains of mice are deficient in DNA polymerase iota and have normal immunoglobulin hypermutation.

McDonald JP, Frank EG, Plosky BS, Rogozin IB, Masutani C, Hanaoka F, Woodgate R, Gearhart PJ.

J Exp Med. 2003 Aug 18;198(4):635-43.


poliota-dependent lesion bypass in vitro.

Vaisman A, Frank EG, McDonald JP, Tissier A, Woodgate R.

Mutat Res. 2002 Dec 29;510(1-2):9-22. Review.


Randomized crossover trial of two treatments for sleep apnea/hypopnea syndrome: continuous positive airway pressure and mandibular repositioning splint.

Engleman HM, McDonald JP, Graham D, Lello GE, Kingshott RN, Coleman EL, Mackay TW, Douglas NJ.

Am J Respir Crit Care Med. 2002 Sep 15;166(6):855-9.


Altered nucleotide misinsertion fidelity associated with poliota-dependent replication at the end of a DNA template.

Frank EG, Tissier A, McDonald JP, Rapić-Otrin V, Zeng X, Gearhart PJ, Woodgate R.

EMBO J. 2001 Jun 1;20(11):2914-22.

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