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Survival of Brenneria goodwinii and Gibbsiella quercinecans, associated with acute oak decline, in rainwater and forest soil.

Pettifor BJ, Doonan J, Denman S, McDonald JE.

Syst Appl Microbiol. 2020 Jan 3:126052. doi: 10.1016/j.syapm.2019.126052. [Epub ahead of print]


Extraction of Microbial and Host DNA, RNA, and Proteins from Oak Bark Tissue.

Broberg M, McDonald JE.

Methods Protoc. 2019 Feb 5;2(1). pii: E15. doi: 10.3390/mps2010015.


Two-Step Concentration of Complex Water Samples for the Detection of Viruses.

Farkas K, McDonald JE, Malham SK, Jones DL.

Methods Protoc. 2018 Sep 10;1(3). pii: E35. doi: 10.3390/mps1030035.


A Novel Approach to Helping People with Glaucoma Use Their Drops Routinely.

McDonald JE, Dickinson JK.

Optom Vis Sci. 2019 May;96(5):331-334. doi: 10.1097/OPX.0000000000001366. Review.


Critical Evaluation of CrAssphage as a Molecular Marker for Human-Derived Wastewater Contamination in the Aquatic Environment.

Farkas K, Adriaenssens EM, Walker DI, McDonald JE, Malham SK, Jones DL.

Food Environ Virol. 2019 Jun;11(2):113-119. doi: 10.1007/s12560-019-09369-1. Epub 2019 Feb 13.


Use of equine amniotic membrane free-island grafts for treatment of a midstromal corneal ulcer and descemetocele in a snow leopard (Panthera uncia).

Knollinger AM, McDonald JE, Carpenter NA, Crook EK.

J Am Vet Med Assoc. 2018 Dec 15;253(12):1623-1629. doi: 10.2460/javma.253.12.1623.


Genomic analysis of bacteria in the Acute Oak Decline pathobiome.

Doonan J, Denman S, Pachebat JA, McDonald JE.

Microb Genom. 2019 Jan;5(1). doi: 10.1099/mgen.0.000240.


Artelle et al. (2018) miss the science underlying North American wildlife management.

Mawdsley JR, Organ JF, Decker DJ, Forstchen AB, Regan RJ, Riley SJ, Boyce MS, McDonald JE Jr, Dwyer C, Mahoney SP.

Sci Adv. 2018 Oct 3;4(10):eaat8281. doi: 10.1126/sciadv.aat8281. eCollection 2018 Oct.


Seasonal and diurnal surveillance of treated and untreated wastewater for human enteric viruses.

Farkas K, Marshall M, Cooper D, McDonald JE, Malham SK, Peters DE, Maloney JD, Jones DL.

Environ Sci Pollut Res Int. 2018 Nov;25(33):33391-33401. doi: 10.1007/s11356-018-3261-y. Epub 2018 Sep 27.


Vision Care and Diabetes.

McDonald JE.

Home Healthc Now. 2018 Jul/Aug;36(4):258-259. doi: 10.1097/NHH.0000000000000710. No abstract available.


The presence of large focal lesions is a strong independent prognostic factor in multiple myeloma.

Rasche L, Angtuaco EJ, Alpe TL, Gershner GH, McDonald JE, Samant RS, Kumar M, Van Hemert R, Epstein J, Deshpande S, Tytarenko R, Yaccoby S, Hillengass J, Thanendrarajan S, Schinke C, van Rhee F, Zangari M, Walker BA, Barlogie B, Morgan GJ, Davies FE, Weinhold N.

Blood. 2018 Jul 5;132(1):59-66. doi: 10.1182/blood-2018-04-842880. Epub 2018 May 21.


Seasonal and spatial dynamics of enteric viruses in wastewater and in riverine and estuarine receiving waters.

Farkas K, Cooper DM, McDonald JE, Malham SK, de Rougemont A, Jones DL.

Sci Total Environ. 2018 Sep 1;634:1174-1183. doi: 10.1016/j.scitotenv.2018.04.038. Epub 2018 Apr 18.


Comparing human peritoneal fluid and phosphate-buffered saline for drug delivery: do we need bio-relevant media?

Bhusal P, Rahiri JL, Sua B, McDonald JE, Bansal M, Hanning S, Sharma M, Chandramouli K, Harrison J, Procter G, Andrews G, Jones DS, Hill AG, Svirskis D.

Drug Deliv Transl Res. 2018 Jun;8(3):708-718. doi: 10.1007/s13346-018-0513-9.


Treatment to suppression of focal lesions on positron emission tomography-computed tomography is a therapeutic goal in newly diagnosed multiple myeloma.

Davies FE, Rosenthal A, Rasche L, Petty NM, McDonald JE, Ntambi JA, Steward DM, Panozzo SB, van Rhee F, Zangari M, Schinke CD, Thanendrarajan S, Walker B, Weinhold N, Barlogie B, Hoering A, Morgan GJ.

Haematologica. 2018 Jun;103(6):1047-1053. doi: 10.3324/haematol.2017.177139. Epub 2018 Mar 22.


The use of hyaluronic acid subdermal filler for entropion in canines and felines: 40 cases.

McDonald JE, Knollinger AM.

Vet Ophthalmol. 2019 Mar;22(2):105-115. doi: 10.1111/vop.12566. Epub 2018 Mar 9.


Integrated multi-omic analysis of host-microbiota interactions in acute oak decline.

Broberg M, Doonan J, Mundt F, Denman S, McDonald JE.

Microbiome. 2018 Jan 30;6(1):21. doi: 10.1186/s40168-018-0408-5.


Human anthocyanin bioavailability: effect of intake duration and dosing.

Kalt W, McDonald JE, Vinqvist-Tymchuk MR, Liu Y, Fillmore SAE.

Food Funct. 2017 Dec 13;8(12):4563-4569. doi: 10.1039/c7fo01074e.


Physicochemical Factors Influence the Abundance and Culturability of Human Enteric Pathogens and Fecal Indicator Organisms in Estuarine Water and Sediment.

Hassard F, Andrews A, Jones DL, Parsons L, Jones V, Cox BA, Daldorph P, Brett H, McDonald JE, Malham SK.

Front Microbiol. 2017 Oct 17;8:1996. doi: 10.3389/fmicb.2017.01996. eCollection 2017.


Microbiome and infectivity studies reveal complex polyspecies tree disease in Acute Oak Decline.

Denman S, Doonan J, Ransom-Jones E, Broberg M, Plummer S, Kirk S, Scarlett K, Griffiths AR, Kaczmarek M, Forster J, Peace A, Golyshin PN, Hassard F, Brown N, Kenny JG, McDonald JE.

ISME J. 2018 Feb;12(2):386-399. doi: 10.1038/ismej.2017.170. Epub 2017 Oct 13.


Subtle shifts in microbial communities occur alongside the release of carbon induced by drought and rewetting in contrasting peatland ecosystems.

Potter C, Freeman C, Golyshin PN, Ackermann G, Fenner N, McDonald JE, Ehbair A, Jones TG, Murphy LM, Creer S.

Sci Rep. 2017 Sep 12;7(1):11314. doi: 10.1038/s41598-017-11546-w.


Lignocellulose-Degrading Microbial Communities in Landfill Sites Represent a Repository of Unexplored Biomass-Degrading Diversity.

Ransom-Jones E, McCarthy AJ, Haldenby S, Doonan J, McDonald JE.

mSphere. 2017 Aug 2;2(4). pii: e00300-17. doi: 10.1128/mSphere.00300-17. eCollection 2017 Jul-Aug.


Multilocus sequence typing provides insights into the population structure and evolutionary potential of Brenneria goodwinii, associated with acute oak decline.

Kaczmarek M, Mullett MS, McDonald JE, Denman S.

PLoS One. 2017 Jun 1;12(6):e0178390. doi: 10.1371/journal.pone.0178390. eCollection 2017.


Low expression of hexokinase-2 is associated with false-negative FDG-positron emission tomography in multiple myeloma.

Rasche L, Angtuaco E, McDonald JE, Buros A, Stein C, Pawlyn C, Thanendrarajan S, Schinke C, Samant R, Yaccoby S, Walker BA, Epstein J, Zangari M, van Rhee F, Meissner T, Goldschmidt H, Hemminki K, Houlston R, Barlogie B, Davies FE, Morgan GJ, Weinhold N.

Blood. 2017 Jul 6;130(1):30-34. doi: 10.1182/blood-2017-03-774422. Epub 2017 Apr 21.


Evaluation of Two Triplex One-Step qRT-PCR Assays for the Quantification of Human Enteric Viruses in Environmental Samples.

Farkas K, Peters DE, McDonald JE, de Rougemont A, Malham SK, Jones DL.

Food Environ Virol. 2017 Sep;9(3):342-349. doi: 10.1007/s12560-017-9293-5. Epub 2017 Apr 8.


Fifty important research questions in microbial ecology.

Antwis RE, Griffiths SM, Harrison XA, Aranega-Bou P, Arce A, Bettridge AS, Brailsford FL, de Menezes A, Devaynes A, Forbes KM, Fry EL, Goodhead I, Haskell E, Heys C, James C, Johnston SR, Lewis GR, Lewis Z, Macey MC, McCarthy A, McDonald JE, Mejia-Florez NL, O'Brien D, Orland C, Pautasso M, Reid WDK, Robinson HA, Wilson K, Sutherland WJ.

FEMS Microbiol Ecol. 2017 May 1;93(5). doi: 10.1093/femsec/fix044.


Determination of Schirmer tear test-1 values in clinically normal alpacas (Vicugña pacos) in North America.

McDonald JE, Knollinger AM, Dees DD, MacLaren NE.

Vet Ophthalmol. 2018 Jan;21(1):101-103. doi: 10.1111/vop.12466. Epub 2017 Mar 14.


Orbital rhabdomyosarcoma and traumatic neuroma following enucleation for a uveal schwannoma in a dog: a case report.

McDonald JE, Knollinger AM, Teixeira LB, Dubielzig RR.

Clin Case Rep. 2017 Feb 3;5(3):300-307. doi: 10.1002/ccr3.842. eCollection 2017 Mar.


Regarding Harolds et al, "Recruitment into a Combined Radiology/Nuclear Medicine Subspecialty".

McDonald JE, Bezold SL, Deloney LA, Jambhekar K.

J Am Coll Radiol. 2017 Apr;14(4):450-451. doi: 10.1016/j.jacr.2017.01.010. Epub 2017 Mar 1. No abstract available.


Critical Review on the Public Health Impact of Norovirus Contamination in Shellfish and the Environment: A UK Perspective.

Hassard F, Sharp JH, Taft H, LeVay L, Harris JP, McDonald JE, Tuson K, Wilson J, Jones DL, Malham SK.

Food Environ Virol. 2017 Jun;9(2):123-141. doi: 10.1007/s12560-017-9279-3. Epub 2017 Feb 7. Review.


Evaluation of Molecular Methods for the Detection and Quantification of Pathogen-Derived Nucleic Acids in Sediment.

Farkas K, Hassard F, McDonald JE, Malham SK, Jones DL.

Front Microbiol. 2017 Jan 24;8:53. doi: 10.3389/fmicb.2017.00053. eCollection 2017.


Flavonoid Metabolites in Human Urine during Blueberry Anthocyanin Intake.

Kalt W, McDonald JE, Liu Y, Fillmore SA.

J Agric Food Chem. 2017 Mar 1;65(8):1582-1591. doi: 10.1021/acs.jafc.6b05455. Epub 2017 Feb 17.


Shotgun Metagenomic Sequencing Analysis of Soft-Rot Enterobacteriaceae in Polymicrobial Communities.

Doonan J, Denman S, McDonald JE, Golyshin PN.

Methods Mol Biol. 2017;1539:85-97.


Abundance and Distribution of Enteric Bacteria and Viruses in Coastal and Estuarine Sediments-a Review.

Hassard F, Gwyther CL, Farkas K, Andrews A, Jones V, Cox B, Brett H, Jones DL, McDonald JE, Malham SK.

Front Microbiol. 2016 Nov 1;7:1692. eCollection 2016. Review.


Assessment of Total Lesion Glycolysis by 18F FDG PET/CT Significantly Improves Prognostic Value of GEP and ISS in Myeloma.

McDonald JE, Kessler MM, Gardner MW, Buros AF, Ntambi JA, Waheed S, van Rhee F, Zangari M, Heuck CJ, Petty N, Schinke C, Thanendrarajan S, Mitchell A, Hoering A, Barlogie B, Morgan GJ, Davies FE.

Clin Cancer Res. 2017 Apr 15;23(8):1981-1987. doi: 10.1158/1078-0432.CCR-16-0235. Epub 2016 Oct 3.


Draft Genome Sequence of Clostridium sp. Strain W14A Isolated from a Cellulose-Degrading Biofilm in a Landfill Leachate Microcosm.

Ransom-Jones E, McDonald JE.

Genome Announc. 2016 Sep 22;4(5). pii: e00985-16. doi: 10.1128/genomeA.00985-16.


Use of Mytilus edulis biosentinels to investigate spatial patterns of norovirus and faecal indicator organism contamination around coastal sewage discharges.

Winterbourn JB, Clements K, Lowther JA, Malham SK, McDonald JE, Jones DL.

Water Res. 2016 Nov 15;105:241-250. doi: 10.1016/j.watres.2016.09.002. Epub 2016 Sep 5.


Isolation studies reveal a shift in the cultivable microbiome of oak affected with Acute Oak Decline.

Denman S, Plummer S, Kirk S, Peace A, McDonald JE.

Syst Appl Microbiol. 2016 Oct;39(7):484-490. doi: 10.1016/j.syapm.2016.07.002. Epub 2016 Aug 6.


Characterising the Canine Oral Microbiome by Direct Sequencing of Reverse-Transcribed rRNA Molecules.

McDonald JE, Larsen N, Pennington A, Connolly J, Wallis C, Rooks DJ, Hall N, McCarthy AJ, Allison HE.

PLoS One. 2016 Jun 8;11(6):e0157046. doi: 10.1371/journal.pone.0157046. eCollection 2016.


Spatial patterns and environmental constraints on ecosystem services at a catchment scale.

Emmett BA, Cooper D, Smart S, Jackson B, Thomas A, Cosby B, Evans C, Glanville H, McDonald JE, Malham SK, Marshall M, Jarvis S, Rajko-Nenow P, Webb GP, Ward S, Rowe E, Jones L, Vanbergen AJ, Keith A, Carter H, Pereira MG, Hughes S, Lebron I, Wade A, Jones DL.

Sci Total Environ. 2016 Dec 1;572:1586-1600. doi: 10.1016/j.scitotenv.2016.04.004. Epub 2016 May 5.


Comparison of intraocular pressure measurements using rebound (TonoVet® ) and applanation (TonoPen-XL® ) tonometry in clinically normal alpacas (Vicugña pacos).

McDonald JE, Knollinger AM, Dustin Dees D, MacLaren NE.

Vet Ophthalmol. 2017 Mar;20(2):155-159. doi: 10.1111/vop.12384. Epub 2016 Apr 25.


Decay rates of faecal indicator bacteria from sewage and ovine faeces in brackish and freshwater microcosms with contrasting suspended particulate matter concentrations.

Perkins TL, Perrow K, Rajko-Nenow P, Jago CF, Jones DL, Malham SK, McDonald JE.

Sci Total Environ. 2016 Dec 1;572:1645-1652. doi: 10.1016/j.scitotenv.2016.03.076. Epub 2016 Mar 31.


111In-Pentetreotide Imaging in Diffuse Idiopathic Neuroendocrine Hyperplasia of the Lung.

Kuruva M, Shah HR, Dunn AL, McDonald JE.

Clin Nucl Med. 2016 Mar;41(3):239-40. doi: 10.1097/RLU.0000000000001079.


Lessons Learned Establishing a Radiology Resident Education Fund.

Jambhekar K, McDonald JE, Braswell LE, Deloney LA.

J Am Coll Radiol. 2016 Feb;13(2):196-7. doi: 10.1016/j.jacr.2015.06.032. Epub 2015 Sep 26. No abstract available.


Effect of topical latanoprost 0.005% on intraocular pressure and pupil diameter in normal and glaucomatous cats.

McDonald JE, Kiland JA, Kaufman PL, Bentley E, Ellinwood NM, McLellan GJ.

Vet Ophthalmol. 2016 Jul;19 Suppl 1:13-23. doi: 10.1111/vop.12292. Epub 2015 Jul 16.


Ventral transpalpebral anterior orbitotomy: surgical description and report of 3 cases.

McDonald JE, Knollinger AM, Dees DD.

Vet Ophthalmol. 2016 Jan;19(1):81-9. doi: 10.1111/vop.12278. Epub 2015 Apr 30.


Using chemical, microbial and fluorescence techniques to understand contaminant sources and pathways to wetlands in a conservation site.

Rhymes J, Jones L, Lapworth DJ, White D, Fenner N, McDonald JE, Perkins TL.

Sci Total Environ. 2015 Apr 1;511:703-10. doi: 10.1016/j.scitotenv.2014.12.085. Epub 2015 Jan 20.


Sediment composition influences spatial variation in the abundance of human pathogen indicator bacteria within an estuarine environment.

Perkins TL, Clements K, Baas JH, Jago CF, Jones DL, Malham SK, McDonald JE.

PLoS One. 2014 Nov 14;9(11):e112951. doi: 10.1371/journal.pone.0112951. eCollection 2014.


The intergenic transcribed spacer region 1 as a molecular marker for identification and discrimination of Enterobacteriaceae associated with acute oak decline.

Doonan J, Denman S, Gertler C, Pachebat JA, Golyshin PN, McDonald JE.

J Appl Microbiol. 2015 Jan;118(1):193-201. doi: 10.1111/jam.12677. Epub 2014 Nov 27.


Blueberry effects on dark vision and recovery after photobleaching: placebo-controlled crossover studies.

Kalt W, McDonald JE, Fillmore SA, Tremblay F.

J Agric Food Chem. 2014 Nov 19;62(46):11180-9. doi: 10.1021/jf503689c. Epub 2014 Nov 6.


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