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Items: 1 to 50 of 150

1.

Biotic interactions are an unexpected yet critical control on the complexity of an abiotically driven polar ecosystem.

Lee CK, Laughlin DC, Bottos EM, Caruso T, Joy K, Barrett JE, Brabyn L, Nielsen UN, Adams BJ, Wall DH, Hopkins DW, Pointing SB, McDonald IR, Cowan DA, Banks JC, Stichbury GA, Jones I, Zawar-Reza P, Katurji M, Hogg ID, Sparrow AD, Storey BC, Allan Green TG, Cary SC.

Commun Biol. 2019 Feb 15;2:62. doi: 10.1038/s42003-018-0274-5. eCollection 2019.

2.

Microbial biogeography of 925 geothermal springs in New Zealand.

Power JF, Carere CR, Lee CK, Wakerley GLJ, Evans DW, Button M, White D, Climo MD, Hinze AM, Morgan XC, McDonald IR, Cary SC, Stott MB.

Nat Commun. 2018 Jul 23;9(1):2876. doi: 10.1038/s41467-018-05020-y.

3.

Microbial community dynamics in Inferno Crater Lake, a thermally fluctuating geothermal spring.

Ward L, Taylor MW, Power JF, Scott BJ, McDonald IR, Stott MB.

ISME J. 2017 May;11(5):1158-1167. doi: 10.1038/ismej.2016.193. Epub 2017 Jan 10.

4.

The Chthonomonas calidirosea Genome Is Highly Conserved across Geographic Locations and Distinct Chemical and Microbial Environments in New Zealand's Taupō Volcanic Zone.

Lee KC, Stott MB, Dunfield PF, Huttenhower C, McDonald IR, Morgan XC.

Appl Environ Microbiol. 2016 May 31;82(12):3572-81. doi: 10.1128/AEM.00139-16. Print 2016 Jun 15.

5.

Thermorudis pharmacophila sp. nov., a novel member of the class Thermomicrobia isolated from geothermal soil, and emended descriptions of Thermomicrobium roseum, Thermomicrobium carboxidum, Thermorudis peleae and Sphaerobacter thermophilus.

Houghton KM, Morgan XC, Lagutin K, MacKenzie AD, Vyssotskii M, Mitchell KA, McDonald IR, Morgan HW, Power JF, Moreau JW, Hanssen E, Stott MB.

Int J Syst Evol Microbiol. 2015 Dec;65(12):4479-87. doi: 10.1099/ijsem.0.000598. Epub 2015 Sep 14.

PMID:
26374291
6.

Benthic microbial communities of coastal terrestrial and ice shelf Antarctic meltwater ponds.

Archer SD, McDonald IR, Herbold CW, Lee CK, Cary CS.

Front Microbiol. 2015 May 27;6:485. doi: 10.3389/fmicb.2015.00485. eCollection 2015.

7.

Characterisation of bacterioplankton communities in the meltwater ponds of Bratina Island, Victoria Land, Antarctica.

Archer SD, McDonald IR, Herbold CW, Cary SC.

FEMS Microbiol Ecol. 2014 Aug;89(2):451-64. doi: 10.1111/1574-6941.12358. Epub 2014 Jun 17.

8.

Evidence of global-scale aeolian dispersal and endemism in isolated geothermal microbial communities of Antarctica.

Herbold CW, Lee CK, McDonald IR, Cary SC.

Nat Commun. 2014 May 20;5:3875. doi: 10.1038/ncomms4875.

PMID:
24846491
9.

Effect of long-term starvation on the survival, recovery, and carbon utilization profiles of a bovine Escherichia coli O157:H7 isolate from New Zealand.

Xavier RN, Morgan HW, McDonald IR, Withers H.

Appl Environ Microbiol. 2014 Jul;80(14):4383-90. doi: 10.1128/AEM.00045-14. Epub 2014 May 9.

10.

Influence of soil properties on archaeal diversity and distribution in the McMurdo Dry Valleys, Antarctica.

Richter I, Herbold CW, Lee CK, McDonald IR, Barrett JE, Cary SC.

FEMS Microbiol Ecol. 2014 Aug;89(2):347-59. doi: 10.1111/1574-6941.12322. Epub 2014 Apr 16.

11.

Genomic analysis of Chthonomonas calidirosea, the first sequenced isolate of the phylum Armatimonadetes.

Lee KC, Morgan XC, Dunfield PF, Tamas I, McDonald IR, Stott MB.

ISME J. 2014 Jul;8(7):1522-33. doi: 10.1038/ismej.2013.251. Epub 2014 Jan 30.

12.

Phylogenetic delineation of the novel phylum Armatimonadetes (former candidate division OP10) and definition of two novel candidate divisions.

Lee KC, Herbold CW, Dunfield PF, Morgan XC, McDonald IR, Stott MB.

Appl Environ Microbiol. 2013 Apr;79(7):2484-7. doi: 10.1128/AEM.03333-12. Epub 2013 Feb 1.

13.

Groundtruthing next-gen sequencing for microbial ecology-biases and errors in community structure estimates from PCR amplicon pyrosequencing.

Lee CK, Herbold CW, Polson SW, Wommack KE, Williamson SJ, McDonald IR, Cary SC.

PLoS One. 2012;7(9):e44224. doi: 10.1371/journal.pone.0044224. Epub 2012 Sep 6.

14.

Diversity of methyl halide-degrading microorganisms in oceanic and coastal waters.

Cox MJ, Schäfer H, Nightingale PD, McDonald IR, Murrell JC.

FEMS Microbiol Lett. 2012 Sep;334(2):111-8. doi: 10.1111/j.1574-6968.2012.02624.x. Epub 2012 Jul 9.

15.

Electing a candidate: a speculative history of the bacterial phylum OP10.

Dunfield PF, Tamas I, Lee KC, Morgan XC, McDonald IR, Stott MB.

Environ Microbiol. 2012 Dec;14(12):3069-80. doi: 10.1111/j.1462-2920.2012.02742.x. Epub 2012 Apr 13.

PMID:
22497633
16.

Evaluation of lactic acid bacterium from chilli waste as a potential antifungal agent for wood products.

O'Callahan DR, Singh T, McDonald IR.

J Appl Microbiol. 2012 Mar;112(3):436-42. doi: 10.1111/j.1365-2672.2011.05226.x.

17.

Rapid microbial response to the presence of an ancient relic in the Antarctic Dry Valleys.

Tiao G, Lee CK, McDonald IR, Cowan DA, Cary SC.

Nat Commun. 2012 Feb 7;3:660. doi: 10.1038/ncomms1645.

PMID:
22314356
18.

The Inter-Valley Soil Comparative Survey: the ecology of Dry Valley edaphic microbial communities.

Lee CK, Barbier BA, Bottos EM, McDonald IR, Cary SC.

ISME J. 2012 May;6(5):1046-57. doi: 10.1038/ismej.2011.170. Epub 2011 Dec 15.

19.

Nitrate removal, communities of denitrifiers and adverse effects in different carbon substrates for use in denitrification beds.

Warneke S, Schipper LA, Matiasek MG, Scow KM, Cameron S, Bruesewitz DA, McDonald IR.

Water Res. 2011 Nov 1;45(17):5463-75. doi: 10.1016/j.watres.2011.08.007. Epub 2011 Aug 17.

20.

Chthonomonas calidirosea gen. nov., sp. nov., an aerobic, pigmented, thermophilic micro-organism of a novel bacterial class, Chthonomonadetes classis nov., of the newly described phylum Armatimonadetes originally designated candidate division OP10.

Lee KC, Dunfield PF, Morgan XC, Crowe MA, Houghton KM, Vyssotski M, Ryan JL, Lagutin K, McDonald IR, Stott MB.

Int J Syst Evol Microbiol. 2011 Oct;61(Pt 10):2482-90. doi: 10.1099/ijs.0.027235-0. Epub 2010 Nov 19.

PMID:
21097641
21.

Identifying diazotrophs by incorporation of nitrogen from (15)N(2) into RNA.

Addison SL, McDonald IR, Lloyd-Jones G.

Appl Microbiol Biotechnol. 2010 Aug;87(6):2313-22. doi: 10.1007/s00253-010-2731-z. Epub 2010 Jun 26.

PMID:
20582411
22.

On the rocks: the microbiology of Antarctic Dry Valley soils.

Cary SC, McDonald IR, Barrett JE, Cowan DA.

Nat Rev Microbiol. 2010 Feb;8(2):129-38. doi: 10.1038/nrmicro2281. Review.

PMID:
20075927
23.

Stable isotope probing: technical considerations when resolving (15)N-labeled RNA in gradients.

Addison SL, McDonald IR, Lloyd-Jones G.

J Microbiol Methods. 2010 Jan;80(1):70-5. doi: 10.1016/j.mimet.2009.11.002. Epub 2009 Nov 10.

PMID:
19903500
24.

Microbial biodiversity of thermophilic communities in hot mineral soils of Tramway Ridge, Mount Erebus, Antarctica.

Soo RM, Wood SA, Grzymski JJ, McDonald IR, Cary SC.

Environ Microbiol. 2009 Mar;11(3):715-28. doi: 10.1111/j.1462-2920.2009.01859.x.

PMID:
19278453
25.

Microbial community composition in soils of Northern Victoria Land, Antarctica.

Niederberger TD, McDonald IR, Hacker AL, Soo RM, Barrett JE, Wall DH, Cary SC.

Environ Microbiol. 2008 Jul;10(7):1713-24. doi: 10.1111/j.1462-2920.2008.01593.x. Epub 2008 Mar 28.

PMID:
18373679
26.

Venenivibrio stagnispumantis gen. nov., sp. nov., a thermophilic hydrogen-oxidizing bacterium isolated from Champagne Pool, Waiotapu, New Zealand.

Hetzer A, McDonald IR, Morgan HW.

Int J Syst Evol Microbiol. 2008 Feb;58(Pt 2):398-403. doi: 10.1099/ijs.0.64842-0.

PMID:
18218938
27.

Molecular ecology techniques for the study of aerobic methanotrophs.

McDonald IR, Bodrossy L, Chen Y, Murrell JC.

Appl Environ Microbiol. 2008 Mar;74(5):1305-15. doi: 10.1128/AEM.02233-07. Epub 2007 Dec 28. Review. No abstract available.

28.

Howardella ureilytica gen. nov., sp. nov., a Gram-positive, coccoid-shaped bacterium from a sheep rumen.

Cook AR, Riley PW, Murdoch H, Evans PN, McDonald IR.

Int J Syst Evol Microbiol. 2007 Dec;57(Pt 12):2940-5.

PMID:
18048754
29.

Stable-isotope probing implicates Methylophaga spp and novel Gammaproteobacteria in marine methanol and methylamine metabolism.

Neufeld JD, Schäfer H, Cox MJ, Boden R, McDonald IR, Murrell JC.

ISME J. 2007 Oct;1(6):480-91. Epub 2007 Aug 9.

PMID:
18043650
30.

Microbial life in Champagne Pool, a geothermal spring in Waiotapu, New Zealand.

Hetzer A, Morgan HW, McDonald IR, Daughney CJ.

Extremophiles. 2007 Jul;11(4):605-14. Epub 2007 Apr 11.

PMID:
17426919
31.

Identification of a complete methane monooxygenase operon from soil by combining stable isotope probing and metagenomic analysis.

Dumont MG, Radajewski SM, Miguez CB, McDonald IR, Murrell JC.

Environ Microbiol. 2006 Jul;8(7):1240-50.

PMID:
16817932
32.

Ignisphaera aggregans gen. nov., sp. nov., a novel hyperthermophilic crenarchaeote isolated from hot springs in Rotorua and Tokaanu, New Zealand.

Niederberger TD, Götz DK, McDonald IR, Ronimus RS, Morgan HW.

Int J Syst Evol Microbiol. 2006 May;56(Pt 5):965-71.

PMID:
16627639
33.

Methylocystis rosea sp. nov., a novel methanotrophic bacterium from Arctic wetland soil, Svalbard, Norway (78 degrees N).

Wartiainen I, Hestnes AG, McDonald IR, Svenning MM.

Int J Syst Evol Microbiol. 2006 Mar;56(Pt 3):541-7.

PMID:
16514024
34.

Diversity of soluble methane monooxygenase-containing methanotrophs isolated from polluted environments.

McDonald IR, Miguez CB, Rogge G, Bourque D, Wendlandt KD, Groleau D, Murrell JC.

FEMS Microbiol Lett. 2006 Feb;255(2):225-32.

35.

Methylobacter tundripaludum sp. nov., a methane-oxidizing bacterium from Arctic wetland soil on the Svalbard islands, Norway (78 degrees N).

Wartiainen I, Hestnes AG, McDonald IR, Svenning MM.

Int J Syst Evol Microbiol. 2006 Jan;56(Pt 1):109-13.

PMID:
16403874
36.

Regulation of methane oxidation in the facultative methanotroph Methylocella silvestris BL2.

Theisen AR, Ali MH, Radajewski S, Dumont MG, Dunfield PF, McDonald IR, Dedysh SN, Miguez CB, Murrell JC.

Mol Microbiol. 2005 Nov;58(3):682-92.

37.
38.

Aminobacter ciceronei sp. nov. and Aminobacter lissarensis sp. nov., isolated from various terrestrial environments.

McDonald IR, Kämpfer P, Topp E, Warner KL, Cox MJ, Hancock TL, Miller LG, Larkin MJ, Ducrocq V, Coulter C, Harper DB, Murrell JC, Oremland RS.

Int J Syst Evol Microbiol. 2005 Sep;55(Pt 5):1827-32.

PMID:
16166673
39.
40.

Molecular detection and isolation from antarctica of methylotrophic bacteria able to grow with methylated sulfur compounds.

Moosvi SA, McDonald IR, Pearce DA, Kelly DP, Wood AP.

Syst Appl Microbiol. 2005 Aug;28(6):541-54.

PMID:
16104352
41.

Analysis of genes involved in methyl halide degradation in Aminobacter lissarensis CC495.

Warner KL, Larkin MJ, Harper DB, Murrell JC, McDonald IR.

FEMS Microbiol Lett. 2005 Oct 1;251(1):45-51.

42.

Methanotrophic populations in estuarine sediment from Newport Bay, California.

McDonald IR, Smith K, Lidstrom ME.

FEMS Microbiol Lett. 2005 Sep 15;250(2):287-93.

43.

Isolation and molecular detection of methylotrophic bacteria occurring in the human mouth.

Anesti V, McDonald IR, Ramaswamy M, Wade WG, Kelly DP, Wood AP.

Environ Microbiol. 2005 Aug;7(8):1227-38.

PMID:
16011760
44.

Evidence for the presence of a CmuA methyltransferase pathway in novel marine methyl halide-oxidizing bacteria.

Schäfer H, McDonald IR, Nightingale PD, Murrell JC.

Environ Microbiol. 2005 Jun;7(6):839-52.

PMID:
15892703
45.

Bacterial diversity in the bacterioneuston (sea surface microlayer): the bacterioneuston through the looking glass.

Franklin MP, McDonald IR, Bourne DG, Owens NJ, Upstill-Goddard RC, Murrell JC.

Environ Microbiol. 2005 May;7(5):723-36.

PMID:
15819854
46.

Isolation and properties of methanesulfonate-degrading Afipia felis from Antarctica and comparison with other strains of A. felis.

Moosvi SA, Pacheco CC, McDonald IR, De Marco P, Pearce DA, Kelly DP, Wood AP.

Environ Microbiol. 2005 Jan;7(1):22-33.

PMID:
15643932
47.

Molecular diversity of methanotrophs in Transbaikal soda lake sediments and identification of potentially active populations by stable isotope probing.

Lin JL, Radajewski S, Eshinimaev BT, Trotsenko YA, McDonald IR, Murrell JC.

Environ Microbiol. 2004 Oct;6(10):1049-60.

PMID:
15344930
48.

Molecular detection and isolation of facultatively methylotrophic bacteria, including Methylobacterium podarium sp. nov., from the human foot microflora.

Anesti V, Vohra J, Goonetilleka S, McDonald IR, Sträubler B, Stackebrandt E, Kelly DP, Wood AP.

Environ Microbiol. 2004 Aug;6(8):820-30.

PMID:
15250884
49.

Chloromethane-dependent expression of the cmu gene cluster of Hyphomicrobium chloromethanicum.

Borodina E, McDonald IR, Murrell JC.

Appl Environ Microbiol. 2004 Jul;70(7):4177-86.

50.

Analysis of methanotrophic bacteria in Movile Cave by stable isotope probing.

Hutchens E, Radajewski S, Dumont MG, McDonald IR, Murrell JC.

Environ Microbiol. 2004 Feb;6(2):111-20.

PMID:
14756876

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