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Items: 10

1.

Diagnosis of genetic diseases in seriously ill children by rapid whole-genome sequencing and automated phenotyping and interpretation.

Clark MM, Hildreth A, Batalov S, Ding Y, Chowdhury S, Watkins K, Ellsworth K, Camp B, Kint CI, Yacoubian C, Farnaes L, Bainbridge MN, Beebe C, Braun JJA, Bray M, Carroll J, Cakici JA, Caylor SA, Clarke C, Creed MP, Friedman J, Frith A, Gain R, Gaughran M, George S, Gilmer S, Gleeson J, Gore J, Grunenwald H, Hovey RL, Janes ML, Lin K, McDonagh PD, McBride K, Mulrooney P, Nahas S, Oh D, Oriol A, Puckett L, Rady Z, Reese MG, Ryu J, Salz L, Sanford E, Stewart L, Sweeney N, Tokita M, Van Der Kraan L, White S, Wigby K, Williams B, Wong T, Wright MS, Yamada C, Schols P, Reynders J, Hall K, Dimmock D, Veeraraghavan N, Defay T, Kingsmore SF.

Sci Transl Med. 2019 Apr 24;11(489). pii: eaat6177. doi: 10.1126/scitranslmed.aat6177.

PMID:
31019026
2.

Causal modeling using network ensemble simulations of genetic and gene expression data predicts genes involved in rheumatoid arthritis.

Xing H, McDonagh PD, Bienkowska J, Cashorali T, Runge K, Miller RE, Decaprio D, Church B, Roubenoff R, Khalil IG, Carulli J.

PLoS Comput Biol. 2011 Mar;7(3):e1001105. doi: 10.1371/journal.pcbi.1001105. Epub 2011 Mar 10.

3.

Importing statistical measures into Artemis enhances gene identification in the Leishmania genome project.

Aggarwal G, Worthey EA, McDonagh PD, Myler PJ.

BMC Bioinformatics. 2003 Jun 7;4:23. Epub 2003 Jun 7.

4.

The Leishmania genome project: new insights into gene organization and function.

Myler PJ, Beverley SM, Cruz AK, Dobson DE, Ivens AC, McDonagh PD, Madhubala R, Martinez-Calvillo S, Ruiz JC, Saxena A, Sisk E, Sunkin SM, Worthey E, Yan S, Stuart KD.

Med Microbiol Immunol. 2001 Nov;190(1-2):9-12.

PMID:
11770120
5.

Experimental annotation of the human genome using microarray technology.

Shoemaker DD, Schadt EE, Armour CD, He YD, Garrett-Engele P, McDonagh PD, Loerch PM, Leonardson A, Lum PY, Cavet G, Wu LF, Altschuler SJ, Edwards S, King J, Tsang JS, Schimmack G, Schelter JM, Koch J, Ziman M, Marton MJ, Li B, Cundiff P, Ward T, Castle J, Krolewski M, Meyer MR, Mao M, Burchard J, Kidd MJ, Dai H, Phillips JW, Linsley PS, Stoughton R, Scherer S, Boguski MS.

Nature. 2001 Feb 15;409(6822):922-7.

PMID:
11237012
6.

Genomic organization and gene function in Leishmania.

Myler PJ, Sisk E, McDonagh PD, Martinez-Calvillo S, Schnaufer A, Sunkin SM, Yan S, Madhubala R, Ivens A, Stuart K.

Biochem Soc Trans. 2000 Oct;28(5):527-31. Review.

PMID:
11044368
7.

The unusual gene organization of Leishmania major chromosome 1 may reflect novel transcription processes.

McDonagh PD, Myler PJ, Stuart K.

Nucleic Acids Res. 2000 Jul 15;28(14):2800-3.

8.

The role of tyrosine-9 and the C-terminal helix in the catalytic mechanism of Alpha-class glutathione S-transferases.

Allardyce CS, McDonagh PD, Lian LY, Wolf CR, Roberts GC.

Biochem J. 1999 Nov 1;343 Pt 3:525-31.

9.

Determinants of specificity for aflatoxin B1-8,9-epoxide in alpha-class glutathione S-transferases.

McDonagh PD, Judah DJ, Hayes JD, Lian LY, Neal GE, Wolf CR, Roberts GC.

Biochem J. 1999 Apr 1;339 ( Pt 1):95-101.

10.

Crystal structure of the FMN-binding domain of human cytochrome P450 reductase at 1.93 A resolution.

Zhao Q, Modi S, Smith G, Paine M, McDonagh PD, Wolf CR, Tew D, Lian LY, Roberts GC, Driessen HP.

Protein Sci. 1999 Feb;8(2):298-306.

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