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Transcriptomics analysis defines global cellular response of Agrobacterium tumefaciens 5A to arsenite exposure regulated through the histidine kinases PhoR and AioS.

Rawle RA, Kang YS, Bothner B, Wang G, McDermott TR.

Environ Microbiol. 2019 Aug;21(8):2659-2676. doi: 10.1111/1462-2920.14577. Epub 2019 Apr 16.


The gut microbiome is required for full protection against acute arsenic toxicity in mouse models.

Coryell M, McAlpine M, Pinkham NV, McDermott TR, Walk ST.

Nat Commun. 2018 Dec 21;9(1):5424. doi: 10.1038/s41467-018-07803-9.


Phosphate starvation response controls genes required to synthesize the phosphate analog arsenate.

Wang Q, Kang YS, Alowaifeer A, Shi K, Fan X, Wang L, Jetter J, Bothner B, Wang G, McDermott TR.

Environ Microbiol. 2018 May;20(5):1782-1793. doi: 10.1111/1462-2920.14108. Epub 2018 Apr 10.


Methylphosphonate metabolism by Pseudomonas sp. populations contributes to the methane oversaturation paradox in an oxic freshwater lake.

Wang Q, Dore JE, McDermott TR.

Environ Microbiol. 2017 Jun;19(6):2366-2378. doi: 10.1111/1462-2920.13747. Epub 2017 May 10.


Arsenite oxidation regulator AioR regulates bacterial chemotaxis towards arsenite in Agrobacterium tumefaciens GW4.

Shi K, Fan X, Qiao Z, Han Y, McDermott TR, Wang Q, Wang G.

Sci Rep. 2017 Mar 3;7:43252. doi: 10.1038/srep43252.


Metabolic response of Agrobacterium tumefaciens 5A to arsenite.

Tokmina-Lukaszewska M, Shi Z, Tripet B, McDermott TR, Copié V, Bothner B, Wang G.

Environ Microbiol. 2017 Feb;19(2):710-721. doi: 10.1111/1462-2920.13615. Epub 2017 Jan 23.


Regulatory Activities of Four ArsR Proteins in Agrobacterium tumefaciens 5A.

Kang YS, Brame K, Jetter J, Bothner BB, Wang G, Thiyagarajan S, McDermott TR.

Appl Environ Microbiol. 2016 May 31;82(12):3471-3480. doi: 10.1128/AEM.00262-16. Print 2016 Jun 15.


Geochemistry and Mixing Drive the Spatial Distribution of Free-Living Archaea and Bacteria in Yellowstone Lake.

Kan J, Clingenpeel S, Dow CL, McDermott TR, Macur RE, Inskeep WP, Nealson KH.

Front Microbiol. 2016 Feb 29;7:210. doi: 10.3389/fmicb.2016.00210. eCollection 2016.


Landscape position influences microbial composition and function via redistribution of soil water across a watershed.

Du Z, Riveros-Iregui DA, Jones RT, McDermott TR, Dore JE, McGlynn BL, Emanuel RE, Li X.

Appl Environ Microbiol. 2015 Dec;81(24):8457-68. doi: 10.1128/AEM.02643-15. Epub 2015 Oct 2.


Proteomics and Genetics for Identification of a Bacterial Antimonite Oxidase in Agrobacterium tumefaciens.

Li J, Wang Q, Li M, Yang B, Shi M, Guo W, McDermott TR, Rensing C, Wang G.

Environ Sci Technol. 2015 May 19;49(10):5980-9. doi: 10.1021/es506318b. Epub 2015 May 8.


Erratum for Wang et al., Arsenite oxidase also functions as an antimonite oxidase.

Wang Q, Warelow TP, Kang YS, Romano C, Osborne TH, Lehr CR, Bothner B, McDermott TR, Santini JM, Wang G.

Appl Environ Microbiol. 2015 May 1;81(9):3278. doi: 10.1128/AEM.00734-15. No abstract available.


Arsenite oxidase also functions as an antimonite oxidase.

Wang Q, Warelow TP, Kang YS, Romano C, Osborne TH, Lehr CR, Bothner B, McDermott TR, Santini JM, Wang G.

Appl Environ Microbiol. 2015 Mar;81(6):1959-65. doi: 10.1128/AEM.02981-14. Epub 2015 Jan 9. Erratum in: Appl Environ Microbiol. 2015 May 1;81(9):3278.


Three novel virophage genomes discovered from Yellowstone Lake metagenomes.

Zhou J, Sun D, Childers A, McDermott TR, Wang Y, Liles MR.

J Virol. 2015 Jan 15;89(2):1278-85. doi: 10.1128/JVI.03039-14. Epub 2014 Nov 12.


Involvement of the Acr3 and DctA anti-porters in arsenite oxidation in Agrobacterium tumefaciens 5A.

Kang YS, Shi Z, Bothner B, Wang G, McDermott TR.

Environ Microbiol. 2015 Jun;17(6):1950-62. doi: 10.1111/1462-2920.12468. Epub 2014 Apr 28.


Fate of arsenate following arsenite oxidation in Agrobacterium tumefaciens GW4.

Wang Q, Qin D, Zhang S, Wang L, Li J, Rensing C, McDermott TR, Wang G.

Environ Microbiol. 2015 Jun;17(6):1926-40. doi: 10.1111/1462-2920.12465. Epub 2014 Apr 28.


In situ gene expression profiling of the thermoacidophilic alga Cyanidioschyzon in relation to visible and ultraviolet irradiance.

Skorupa DJ, Castenholz RW, Mazurie A, Carey C, Rosenzweig F, McDermott TR.

Environ Microbiol. 2014 Jun;16(6):1627-41. doi: 10.1111/1462-2920.12317. Epub 2013 Nov 26.


Yellowstone lake nanoarchaeota.

Clingenpeel S, Kan J, Macur RE, Woyke T, Lovalvo D, Varley J, Inskeep WP, Nealson K, McDermott TR.

Front Microbiol. 2013 Sep 11;4:274. doi: 10.3389/fmicb.2013.00274. eCollection 2013.


Cyanidiales diversity in Yellowstone National Park.

Skorupa DJ, Reeb V, Castenholz RW, Bhattacharya D, McDermott TR.

Lett Appl Microbiol. 2013 Nov;57(5):459-66. doi: 10.1111/lam.12135. Epub 2013 Aug 5.


Metagenome sequence analysis of filamentous microbial communities obtained from geochemically distinct geothermal channels reveals specialization of three aquificales lineages.

Takacs-Vesbach C, Inskeep WP, Jay ZJ, Herrgard MJ, Rusch DB, Tringe SG, Kozubal MA, Hamamura N, Macur RE, Fouke BW, Reysenbach AL, McDermott TR, Jennings Rd, Hengartner NW, Xie G.

Front Microbiol. 2013 May 29;4:84. doi: 10.3389/fmicb.2013.00084. eCollection 2013.


Comparative genomic analysis of phylogenetically closely related Hydrogenobaculum sp. isolates from Yellowstone National Park.

Romano C, D'Imperio S, Woyke T, Mavromatis K, Lasken R, Shock EL, McDermott TR.

Appl Environ Microbiol. 2013 May;79(9):2932-43. doi: 10.1128/AEM.03591-12. Epub 2013 Feb 22.


Integrated co-regulation of bacterial arsenic and phosphorus metabolisms.

Kang YS, Heinemann J, Bothner B, Rensing C, McDermott TR.

Environ Microbiol. 2012 Dec;14(12):3097-109. doi: 10.1111/j.1462-2920.2012.02881.x. Epub 2012 Oct 12.


Involvement of RpoN in regulating bacterial arsenite oxidation.

Kang YS, Bothner B, Rensing C, McDermott TR.

Appl Environ Microbiol. 2012 Aug;78(16):5638-45. doi: 10.1128/AEM.00238-12. Epub 2012 Jun 1.


A periplasmic arsenite-binding protein involved in regulating arsenite oxidation.

Liu G, Liu M, Kim EH, Maaty WS, Bothner B, Lei B, Rensing C, Wang G, McDermott TR.

Environ Microbiol. 2012 Jul;14(7):1624-34. doi: 10.1111/j.1462-2920.2011.02672.x. Epub 2011 Dec 19.


Archaea in Yellowstone Lake.

Kan J, Clingenpeel S, Macur RE, Inskeep WP, Lovalvo D, Varley J, Gorby Y, McDermott TR, Nealson K.

ISME J. 2011 Nov;5(11):1784-95. doi: 10.1038/ismej.2011.56. Epub 2011 May 5.


Yellowstone Lake: high-energy geochemistry and rich bacterial diversity.

Clingenpeel S, Macur RE, Kan J, Inskeep WP, Lovalvo D, Varley J, Mathur E, Nealson K, Gorby Y, Jiang H, LaFracois T, McDermott TR.

Environ Microbiol. 2011 Aug;13(8):2172-85. doi: 10.1111/j.1462-2920.2011.02466.x. Epub 2011 Mar 30.


Life and death with arsenic. Arsenic life: an analysis of the recent report "A bacterium that can grow by using arsenic instead of phosphorus".

Rosen BP, Ajees AA, McDermott TR.

Bioessays. 2011 May;33(5):350-7. doi: 10.1002/bies.201100012. Epub 2011 Mar 8. No abstract available.


Complete genome sequence of 'Thermobaculum terrenum' type strain (YNP1).

Kiss H, Cleland D, Lapidus A, Lucas S, Del Rio TG, Nolan M, Tice H, Han C, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Ovchinnikova G, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Lu M, Brettin T, Detter JC, Göker M, Tindall BJ, Beck B, McDermott TR, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Cheng JF.

Stand Genomic Sci. 2010 Oct 27;3(2):153-62. doi: 10.4056/sigs.1153107.


Good to the bone: microbial community thrives within bone cavities of a bison carcass at Yellowstone National Park.

Reeb V, Kolel A, McDermott TR, Bhattacharya D.

Environ Microbiol. 2011 Sep;13(9):2403-15. doi: 10.1111/j.1462-2920.2010.02359.x. Epub 2010 Nov 2.


A geothermal-linked biological oasis in Yellowstone Lake, Yellowstone National Park, Wyoming.

Lovalvo D, Clingenpeel SR, McGinnis S, Macur RE, Varley JD, Inskeep WP, Glime J, Nealson K, McDermott TR.

Geobiology. 2010 Sep;8(4):327-36. doi: 10.1111/j.1472-4669.2010.00244.x. Epub 2010 May 10.


Cloning and in situ expression studies of the Hydrogenobaculum arsenite oxidase genes.

Clingenpeel SR, D'Imperio S, Oduro H, Druschel GK, McDermott TR.

Appl Environ Microbiol. 2009 May;75(10):3362-5. doi: 10.1128/AEM.00336-09. Epub 2009 Mar 20.


Biotransformation of arsenic by a Yellowstone thermoacidophilic eukaryotic alga.

Qin J, Lehr CR, Yuan C, Le XC, McDermott TR, Rosen BP.

Proc Natl Acad Sci U S A. 2009 Mar 31;106(13):5213-7. doi: 10.1073/pnas.0900238106. Epub 2009 Mar 10.


Relative importance of H2 and H2S as energy sources for primary production in geothermal springs.

D'Imperio S, Lehr CR, Oduro H, Druschel G, Kühl M, McDermott TR.

Appl Environ Microbiol. 2008 Sep;74(18):5802-8. doi: 10.1128/AEM.00852-08. Epub 2008 Jul 18.


Biogeographic and phylogenetic diversity of thermoacidophilic cyanidiales in Yellowstone National Park, Japan, and New Zealand.

Toplin JA, Norris TB, Lehr CR, McDermott TR, Castenholz RW.

Appl Environ Microbiol. 2008 May;74(9):2822-33. doi: 10.1128/AEM.02741-07. Epub 2008 Mar 14. Erratum in: Appl Environ Microbiol. 2014 Oct;80(19):6256.


Autecology of an arsenite chemolithotroph: sulfide constraints on function and distribution in a geothermal spring.

D'Imperio S, Lehr CR, Breary M, McDermott TR.

Appl Environ Microbiol. 2007 Nov;73(21):7067-74. Epub 2007 Sep 7.


New insights into microbial oxidation of antimony and arsenic.

Lehr CR, Kashyap DR, McDermott TR.

Appl Environ Microbiol. 2007 Apr;73(7):2386-9. Epub 2007 Feb 16.


Regulation of the Phosphate Stress Response in Rhizobium meliloti by PhoB.

Al-Niemi TS, Summers ML, Elkins JG, Kahn ML, McDermott TR.

Appl Environ Microbiol. 1997 Dec;63(12):4978-81.


A Na+:H+ antiporter and a molybdate transporter are essential for arsenite oxidation in Agrobacterium tumefaciens.

Kashyap DR, Botero LM, Lehr C, Hassett DJ, McDermott TR.

J Bacteriol. 2006 Feb;188(4):1577-84.


Complex regulation of arsenite oxidation in Agrobacterium tumefaciens.

Kashyap DR, Botero LM, Franck WL, Hassett DJ, McDermott TR.

J Bacteriol. 2006 Feb;188(3):1081-8.


Global analysis of cellular factors and responses involved in Pseudomonas aeruginosa resistance to arsenite.

Parvatiyar K, Alsabbagh EM, Ochsner UA, Stegemeyer MA, Smulian AG, Hwang SH, Jackson CR, McDermott TR, Hassett DJ.

J Bacteriol. 2005 Jul;187(14):4853-64.


Poly(A) polymerase modification and reverse transcriptase PCR amplification of environmental RNA.

Botero LM, D'Imperio S, Burr M, McDermott TR, Young M, Hassett DJ.

Appl Environ Microbiol. 2005 Mar;71(3):1267-75.


Classification of isolates from locations in Austria and Yellowstone National Park as Geobacillus tepidamans sp. nov.

Schäffer C, Franck WL, Scheberl A, Kosma P, McDermott TR, Messner P.

Int J Syst Evol Microbiol. 2004 Nov;54(Pt 6):2361-8.


Arsenite-oxidizing Hydrogenobaculum strain isolated from an acid-sulfate-chloride geothermal spring in Yellowstone National Park.

Donahoe-Christiansen J, D'Imperio S, Jackson CR, Inskeep WP, McDermott TR.

Appl Environ Microbiol. 2004 Mar;70(3):1865-8.


Thermobaculum terrenum gen. nov., sp. nov.: a non-phototrophic gram-positive thermophile representing an environmental clone group related to the Chloroflexi (green non-sulfur bacteria) and Thermomicrobia.

Botero LM, Brown KB, Brumefield S, Burr M, Castenholz RW, Young M, McDermott TR.

Arch Microbiol. 2004 Apr;181(4):269-77. Epub 2004 Jan 27.


Bacterial populations associated with the oxidation and reduction of arsenic in an unsaturated soil.

Macur RE, Jackson CR, Botero LM, McDermott TR, Inskeep WP.

Environ Sci Technol. 2004 Jan 1;38(1):104-11.


Anaerobic metabolism and quorum sensing by Pseudomonas aeruginosa biofilms in chronically infected cystic fibrosis airways: rethinking antibiotic treatment strategies and drug targets.

Hassett DJ, Cuppoletti J, Trapnell B, Lymar SV, Rowe JJ, Yoon SS, Hilliard GM, Parvatiyar K, Kamani MC, Wozniak DJ, Hwang SH, McDermott TR, Ochsner UA.

Adv Drug Deliv Rev. 2002 Dec 5;54(11):1425-43. Review.


Soil microbial community structure across a thermal gradient following a geothermal heating event.

Norris TB, Wraith JM, Castenholz RW, McDermott TR.

Appl Environ Microbiol. 2002 Dec;68(12):6300-9.


Pseudomonas aeruginosa anaerobic respiration in biofilms: relationships to cystic fibrosis pathogenesis.

Yoon SS, Hennigan RF, Hilliard GM, Ochsner UA, Parvatiyar K, Kamani MC, Allen HL, DeKievit TR, Gardner PR, Schwab U, Rowe JJ, Iglewski BH, McDermott TR, Mason RP, Wozniak DJ, Hancock RE, Parsek MR, Noah TL, Boucher RC, Hassett DJ.

Dev Cell. 2002 Oct;3(4):593-603.


The long-term effects of UV exclusion on the microbial composition and photosynthetic competence of bacteria in hot-spring microbial mats.

Norris TB, McDermott TR, Castenholz RW.

FEMS Microbiol Ecol. 2002 Mar 1;39(3):193-209. doi: 10.1111/j.1574-6941.2002.tb00922.x.


Microbial populations associated with the reduction and enhanced mobilization of arsenic in mine tailings.

Macur RE, Wheeler JT, McDermott TR, Inskeep WP.

Environ Sci Technol. 2001 Sep 15;35(18):3676-82.


Cloning and characterization of a second acid phosphatase from Sinorhizobium meliloti strain 104A14.

Deng S, Elkins JG, Da LH, Botero LM, McDermott TR.

Arch Microbiol. 2001 Oct;176(4):255-63.


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