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Zoonotic Source Attribution of Salmonella enterica Serotype Typhimurium Using Genomic Surveillance Data, United States.

Zhang S, Li S, Gu W, den Bakker H, Boxrud D, Taylor A, Roe C, Driebe E, Engelthaler DM, Allard M, Brown E, McDermott P, Zhao S, Bruce BB, Trees E, Fields PI, Deng X.

Emerg Infect Dis. 2019 Jan;25(1):82-91. doi: 10.3201/eid2501.180835.


Increased Weight Gain During the Long Interdialytic Period Is Associated with Minor Effects on Blood Pressure Control in Clinically Stable In-Centre Haemodialysis Patients.

Shantier M, Martin WP, Singh R, McDermott P, Gallen R, Suleiman S, Reddan DN, Giblin L, Lappin D, O'Meara YM, Griffin MD.

Nephron. 2018 Nov 9:1-11. doi: 10.1159/000494221. [Epub ahead of print]


Using machine learning to predict antimicrobial minimum inhibitory concentrations and associated genomic features for nontyphoidal Salmonella.

Nguyen M, Long SW, McDermott PF, Olsen RJ, Olson R, Stevens RL, Tyson GH, Zhao S, Davis JJ.

J Clin Microbiol. 2018 Oct 17. pii: JCM.01260-18. doi: 10.1128/JCM.01260-18. [Epub ahead of print]


Novel linezolid resistance plasmids in Enterococcus from food animals in the USA.

Tyson GH, Sabo JL, Hoffmann M, Hsu CH, Mukherjee S, Hernandez J, Tillman G, Wasilenko JL, Haro J, Simmons M, Wilson Egbe W, White PL, Dessai U, Mcdermott PF.

J Antimicrob Chemother. 2018 Dec 1;73(12):3254-3258. doi: 10.1093/jac/dky369.


Whole-Genome Sequence Analysis of CTX-M Containing Escherichia coli Isolates from Retail Meats and Cattle in the United States.

Tadesse DA, Li C, Mukherjee S, Hsu CH, Bodeis Jones S, Gaines SA, Kabera C, Loneragan GH, Torrence M, Harhay DM, McDermott PF, Zhao S.

Microb Drug Resist. 2018 Sep;24(7):939-948. doi: 10.1089/mdr.2018.0206. Epub 2018 Aug 27.


A Population-Based Surveillance Study of Shared Genotypes of Escherichia coli Isolates from Retail Meat and Suspected Cases of Urinary Tract Infections.

Yamaji R, Friedman CR, Rubin J, Suh J, Thys E, McDermott P, Hung-Fan M, Riley LW.

mSphere. 2018 Aug 15;3(4). pii: e00179-18. doi: 10.1128/mSphere.00179-18.


Antimicrobial Resistance in Nontyphoidal Salmonella.

McDermott PF, Zhao S, Tate H.

Microbiol Spectr. 2018 Jul;6(4). doi: 10.1128/microbiolspec.ARBA-0014-2017.


Present and Future Surveillance of Antimicrobial Resistance in Animals: Principles and Practices.

Simjee S, McDermott P, Trott DJ, Chuanchuen R.

Microbiol Spectr. 2018 Jul;6(4). doi: 10.1128/microbiolspec.ARBA-0028-2017.


ACTing in Partnership to Accelerate Impact.

Harrison K, Robinson J, Marks L, Blander J, McDermott P.

J Acquir Immune Defic Syndr. 2018 Aug 15;78 Suppl 2:S65-S70. doi: 10.1097/QAI.0000000000001729.


Identification and Characterization of Conjugative Plasmids That Encode Ciprofloxacin Resistance in Salmonella.

Chen K, Dong N, Zhao S, Liu L, Li R, Xie M, Lin D, Wai-Chi Chan E, Meng J, McDermott PF, Chen S.

Antimicrob Agents Chemother. 2018 Jul 27;62(8). pii: e00575-18. doi: 10.1128/AAC.00575-18. Print 2018 Aug.


Sequence Analysis of IncA/C and IncI1 Plasmids Isolated from Multidrug-Resistant Salmonella Newport Using Single-Molecule Real-Time Sequencing.

Cao G, Allard M, Hoffmann M, Muruvanda T, Luo Y, Payne J, Meng K, Zhao S, McDermott P, Brown E, Meng J.

Foodborne Pathog Dis. 2018 Jun;15(6):361-371. doi: 10.1089/fpd.2017.2385. Epub 2018 Apr 5.


Whole-genome sequencing based characterization of antimicrobial resistance in Enterococcus.

Tyson GH, Sabo JL, Rice-Trujillo C, Hernandez J, McDermott PF.

Pathog Dis. 2018 Mar 1;76(2). doi: 10.1093/femspd/fty018.


Think 500, not 50! A scalable approach to student success in STEM.

LaCourse WR, Sutphin KL, Ott LE, Maton KI, McDermott P, Bieberich C, Farabaugh P, Rous P.

BMC Proc. 2017 Dec 4;11(Suppl 12):24. doi: 10.1186/s12919-017-0094-5. eCollection 2017.


A hierarchical spatiotemporal analog forecasting model for count data.

McDermott PL, Wikle CK, Millspaugh J.

Ecol Evol. 2017 Dec 7;8(1):790-800. doi: 10.1002/ece3.3621. eCollection 2018 Jan.


Complete Genome Sequences of 14 Salmonella enterica Serovar Enteritidis Strains Recovered from Human Clinical Cases between 1949 and 1995 in the United States.

Tadesse DA, Hoffmann M, Sarria S, Lam C, Brown E, Allard M, McDermott PF.

Genome Announc. 2018 Jan 4;6(1). pii: e01406-17. doi: 10.1128/genomeA.01406-17.


Latent Growth Curve and Repeated Measures ANOVA Contrasts: What the Models are Telling You.

Rovine MJ, McDermott PA.

Multivariate Behav Res. 2018 Jan-Feb;53(1):90-101. doi: 10.1080/00273171.2017.1387511. Epub 2017 Dec 8.


Engineering Bacillus megaterium for production of functional intracellular materials.

Grage K, McDermott P, Rehm BHA.

Microb Cell Fact. 2017 Nov 22;16(1):211. doi: 10.1186/s12934-017-0823-5.


Evaluating the immediate effects of wearing foot orthotics in children with Joint Hypermobility Syndrome (JHS) by analysis of temperospatial parameters of gait and dynamic balance: A preliminary study.

McDermott P, Wolfe E, Lowry C, Robinson K, French HP.

Gait Posture. 2018 Feb;60:61-64. doi: 10.1016/j.gaitpost.2017.11.005. Epub 2017 Nov 15.


Latent national subpopulations of early education classroom disengagement of children from underresourced families.

McDermott PA, Rovine MJ, Watkins MW, Chao JL, Irwin CW, Reyes R.

J Sch Psychol. 2017 Dec;65:69-82. doi: 10.1016/j.jsp.2017.07.002. Epub 2017 Aug 8.


Cloning and Expression of Novel Aminoglycoside Phosphotransferase Genes from Campylobacter and Their Role in the Resistance to Six Aminoglycosides.

Zhao S, Mukherjee S, Li C, Jones SB, Young S, McDermott PF.

Antimicrob Agents Chemother. 2017 Dec 21;62(1). pii: e01682-17. doi: 10.1128/AAC.01682-17. Print 2018 Jan.


Prevalence and Antimicrobial Resistance of Enterococci Isolated from Retail Meats in the United States, 2002 to 2014.

Tyson GH, Nyirabahizi E, Crarey E, Kabera C, Lam C, Rice-Trujillo C, McDermott PF, Tate H.

Appl Environ Microbiol. 2017 Dec 15;84(1). pii: e01902-17. doi: 10.1128/AEM.01902-17. Print 2018 Jan 1.


Gyrase A Mutations in Campylobacter Associated with Decreased Susceptibility to Different Fluoroquinolones.

Whitehouse CA, Zhao S, Mukherjee S, Tate H, Bodeis-Jones S, Young S, Gaines S, McDermott P.

J Food Prot. 2017 Oct 10:1863-1866. doi: 10.4315/0362-028X.JFP-17-129. [Epub ahead of print]


Comparative Sequence Analysis of Multidrug-Resistant IncA/C Plasmids from Salmonella enterica.

Hoffmann M, Pettengill JB, Gonzalez-Escalona N, Miller J, Ayers SL, Zhao S, Allard MW, McDermott PF, Brown EW, Monday SR.

Front Microbiol. 2017 Aug 7;8:1459. doi: 10.3389/fmicb.2017.01459. eCollection 2017.


National Antimicrobial Resistance Monitoring System: Two Decades of Advancing Public Health Through Integrated Surveillance of Antimicrobial Resistance.

Karp BE, Tate H, Plumblee JR, Dessai U, Whichard JM, Thacker EL, Hale KR, Wilson W, Friedman CR, Griffin PM, McDermott PF.

Foodborne Pathog Dis. 2017 Oct;14(10):545-557. doi: 10.1089/fpd.2017.2283. Epub 2017 Aug 9. Review.


Corrigendum: Allelic variation contributes to bacterial host specificity.

Yue M, Han X, De Masi L, Zhu C, Ma X, Zhang J, Wu R, Schmieder R, Kaushik RS, Fraser GP, Zhao S, McDermott PF, Weill FX, Mainil JG, Arze C, Fricke WF, Edwards RA, Brisson D, Zhang NR, Rankin SC, Schifferli DM.

Nat Commun. 2017 Aug 8;8:15229. doi: 10.1038/ncomms15229.


Identification of Plasmid-Mediated Quinolone Resistance in Salmonella Isolated from Swine Ceca and Retail Pork Chops in the United States.

Tyson GH, Tate HP, Zhao S, Li C, Dessai U, Simmons M, McDermott PF.

Antimicrob Agents Chemother. 2017 Sep 22;61(10). pii: e01318-17. doi: 10.1128/AAC.01318-17. Print 2017 Oct.


Comparative Analysis of Extended-Spectrum-β-Lactamase CTX-M-65-Producing Salmonella enterica Serovar Infantis Isolates from Humans, Food Animals, and Retail Chickens in the United States.

Tate H, Folster JP, Hsu CH, Chen J, Hoffmann M, Li C, Morales C, Tyson GH, Mukherjee S, Brown AC, Green A, Wilson W, Dessai U, Abbott J, Joseph L, Haro J, Ayers S, McDermott PF, Zhao S.

Antimicrob Agents Chemother. 2017 Jun 27;61(7). pii: e00488-17. doi: 10.1128/AAC.00488-17. Print 2017 Jul.


Coding update of the SMFM definition of low risk for cesarean delivery from ICD-9-CM to ICD-10-CM.

Armstrong J, McDermott P, Saade GR, Srinivas SK; Society for Maternal-Fetal Medicine Health Policy and Advocacy Committee; Society for Maternal-Fetal Medicine Coding Committee.

Am J Obstet Gynecol. 2017 Jul;217(1):B2-B12.e56. doi: 10.1016/j.ajog.2017.04.013. Epub 2017 Apr 13.


Thread-Skip: An Undefined Common Observation.

McDermott P, Allan W.

Int J Prosthodont. 2017 May/June;30(3):302–303. doi: 10.11607/ijp.5035. Epub 2017 Mar 20.


Molecular Subtyping and Source Attribution of Campylobacter Isolated from Food Animals.

Tyson GH, Tate HP, Abbott J, Tran TT, Kabera C, Crarey E, Young S, McDermott PF, Sprague G, Campbell M, Adeyemo O, Browne-Silva J, Myers M, Thitaram S, Zhao S.

J Food Prot. 2016 Nov;79(11):1891-1897. doi: 10.4315/0362-028X.JFP-16-195.


Establishing Genotypic Cutoff Values To Measure Antimicrobial Resistance in Salmonella.

Tyson GH, Zhao S, Li C, Ayers S, Sabo JL, Lam C, Miller RA, McDermott PF.

Antimicrob Agents Chemother. 2017 Feb 23;61(3). pii: e02140-16. doi: 10.1128/AAC.02140-16. Print 2017 Mar.


MRSA and multidrug-resistant Staphylococcus aureus in U.S. retail meats, 2010-2011.

Ge B, Mukherjee S, Hsu CH, Davis JA, Tran TTT, Yang Q, Abbott JW, Ayers SL, Young SR, Crarey ET, Womack NA, Zhao S, McDermott PF.

Food Microbiol. 2017 Apr;62:289-297. doi: 10.1016/ Epub 2016 Oct 18.


World Health Organization Ranking of Antimicrobials According to Their Importance in Human Medicine: A Critical Step for Developing Risk Management Strategies to Control Antimicrobial Resistance From Food Animal Production.

Collignon PJ, Conly JM, Andremont A, McEwen SA, Aidara-Kane A; World Health Organization Advisory Group, Bogotá Meeting on Integrated Surveillance of Antimicrobial Resistance (WHO-AGISAR), Agerso Y, Andremont A, Collignon P, Conly J, Dang Ninh T, Donado-Godoy P, Fedorka-Cray P, Fernandez H, Galas M, Irwin R, Karp B, Matar G, McDermott P, McEwen S, Mitema E, Reid-Smith R, Scott HM, Singh R, DeWaal CS, Stelling J, Toleman M, Watanabe H, Woo GJ.

Clin Infect Dis. 2016 Oct 15;63(8):1087-1093. doi: 10.1093/cid/ciw475. Epub 2016 Jul 20. Review. Erratum in: Clin Infect Dis. 2016 Dec 1;63(11):1536.


Whole-Genome Sequencing for Detecting Antimicrobial Resistance in Nontyphoidal Salmonella.

McDermott PF, Tyson GH, Kabera C, Chen Y, Li C, Folster JP, Ayers SL, Lam C, Tate HP, Zhao S.

Antimicrob Agents Chemother. 2016 Aug 22;60(9):5515-20. doi: 10.1128/AAC.01030-16. Print 2016 Sep.


GOVERNMENT TRANSPARENCY. Reforms to improve U.S. government accountability.

Howard AB, McDermott P.

Science. 2016 Jul 1;353(6294):35-6. doi: 10.1126/science.aag2886. No abstract available.


The American Society for Radiation Oncology's 2015 Core Physics Curriculum for Radiation Oncology Residents.

Burmeister J, Chen Z, Chetty IJ, Dieterich S, Doemer A, Dominello MM, Howell RM, McDermott P, Nalichowski A, Prisciandaro J, Ritter T, Smith C, Schreiber E, Shafman T, Sutlief S, Xiao Y.

Int J Radiat Oncol Biol Phys. 2016 Jul 15;95(4):1298-303. doi: 10.1016/j.ijrobp.2016.03.012. Epub 2016 Mar 19.


Increased expression of estrogen-related receptor β during adaptation of adult cardiomyocytes to sustained hypoxia.

Cunningham KF, Beeson GC, Beeson CC, McDermott PJ.

Am J Cardiovasc Dis. 2016 May 18;6(2):46-54. eCollection 2016.


Antimicrobial Resistance in Salmonella in the United States from 1948 to 1995.

Tadesse DA, Singh A, Zhao S, Bartholomew M, Womack N, Ayers S, Fields PI, McDermott PF.

Antimicrob Agents Chemother. 2016 Mar 25;60(4):2567-71. doi: 10.1128/AAC.02536-15. Print 2016 Apr.


Transition and protective agency of early childhood learning behaviors as portents of later school attendance and adjustment.

McDermott PA, Rikoon SH, Fantuzzo JW.

J Sch Psychol. 2016 Feb;54:59-75. doi: 10.1016/j.jsp.2015.10.003. Epub 2015 Nov 14.


Using whole-genome sequencing to determine appropriate streptomycin epidemiological cutoffs for Salmonella and Escherichia coli.

Tyson GH, Li C, Ayers S, McDermott PF, Zhao S.

FEMS Microbiol Lett. 2016 Feb;363(4). pii: fnw009. doi: 10.1093/femsle/fnw009. Epub 2016 Jan 17.


Comparing variation in hospital rates of cesarean delivery among low-risk women using 3 different measures.

Armstrong JC, Kozhimannil KB, McDermott P, Saade GR, Srinivas SK; Society for Maternal-Fetal Medicine Health Policy Committee.

Am J Obstet Gynecol. 2016 Feb;214(2):153-163. doi: 10.1016/j.ajog.2015.10.935. Epub 2015 Dec 1.


How Sutter Health Built a Shared Services Organization Focused on the Future.

Brokloff M, McDermott P, Hegwer LR.

Revenue-cycle Strateg. 2015 Sep;12(7):1-4. No abstract available.


Whole-Genome Sequencing Analysis Accurately Predicts Antimicrobial Resistance Phenotypes in Campylobacter spp.

Zhao S, Tyson GH, Chen Y, Li C, Mukherjee S, Young S, Lam C, Folster JP, Whichard JM, McDermott PF.

Appl Environ Microbiol. 2015 Oct 30;82(2):459-66. doi: 10.1128/AEM.02873-15. Print 2016 Jan 15.


Allelic variation contributes to bacterial host specificity.

Yue M, Han X, De Masi L, Zhu C, Ma X, Zhang J, Wu R, Schmieder R, Kaushik RS, Fraser GP, Zhao S, McDermott PF, Weill FX, Mainil JG, Arze C, Fricke WF, Edwards RA, Brisson D, Zhang NR, Rankin SC, Schifferli DM.

Nat Commun. 2015 Oct 30;6:8754. doi: 10.1038/ncomms9754. Erratum in: Nat Commun. 2017 Aug 08;8:15229.


Genetic and resistance phenotypic subtyping of Salmonella Saintpaul isolates from various food sources and humans: Phylogenetic concordance in combinatory analyses.

Hayford AE, Brown EW, Zhao S, Mammel MK, Gangiredla J, Abbott JW, Friedman SL, Ayers SL, Lewis JL, Lacher DW, McDermott P, Elkins CA.

Infect Genet Evol. 2015 Dec;36:92-107. doi: 10.1016/j.meegid.2015.08.022. Epub 2015 Aug 20.


An Unusual Presentation of Stafne Bone Cyst.

Lee KH, Thiruchelvam JK, McDermott P.

J Maxillofac Oral Surg. 2015 Sep;14(3):841-4. doi: 10.1007/s12663-014-0737-2. Epub 2015 Jan 13.


WGS accurately predicts antimicrobial resistance in Escherichia coli.

Tyson GH, McDermott PF, Li C, Chen Y, Tadesse DA, Mukherjee S, Bodeis-Jones S, Kabera C, Gaines SA, Loneragan GH, Edrington TS, Torrence M, Harhay DM, Zhao S.

J Antimicrob Chemother. 2015 Oct;70(10):2763-9. doi: 10.1093/jac/dkv186. Epub 2015 Jul 3.


Estrogen-Related Receptor α (ERRα) is required for adaptive increases in PGC-1 isoform expression during electrically stimulated contraction of adult cardiomyocytes in sustained hypoxic conditions.

Cunningham KF, Beeson GC, Beeson CC, Baicu CF, Zile MR, McDermott PJ.

Int J Cardiol. 2015;187:393-400. doi: 10.1016/j.ijcard.2015.03.353. Epub 2015 Mar 25.


Complete Sequences of Six IncA/C Plasmids of Multidrug-Resistant Salmonella enterica subsp. enterica Serotype Newport.

Cao G, Allard MW, Hoffmann M, Monday SR, Muruvanda T, Luo Y, Payne J, Rump L, Meng K, Zhao S, McDermott PF, Brown EW, Meng J.

Genome Announc. 2015 Feb 26;3(1). pii: e00027-15. doi: 10.1128/genomeA.00027-15.


Novel gentamicin resistance genes in Campylobacter isolated from humans and retail meats in the USA.

Zhao S, Mukherjee S, Chen Y, Li C, Young S, Warren M, Abbott J, Friedman S, Kabera C, Karlsson M, McDermott PF.

J Antimicrob Chemother. 2015 May;70(5):1314-21. doi: 10.1093/jac/dkv001. Epub 2015 Feb 1.


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