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Diagnosing and Preventing Hearing Loss in the Genomic Age.

McDermott JH, Molina-Ramírez LP, Bruce IA, Mahaveer A, Turner M, Miele G, Body R, Mahood R, Ulph F, MacLeod R, Harvey K, Booth N, Demain LAM, Wilson P, Black GC, Morton CC, Newman WG.

Trends Hear. 2019 Jan-Dec;23:2331216519878983. doi: 10.1177/2331216519878983.


The Role of EGFR in Influenza Pathogenicity: Multiple Network-Based Approaches to Identify a Key Regulator of Non-lethal Infections.

Mitchell HD, Eisfeld AJ, Stratton KG, Heller NC, Bramer LM, Wen J, McDermott JE, Gralinski LE, Sims AC, Le MQ, Baric RS, Kawaoka Y, Waters KM.

Front Cell Dev Biol. 2019 Sep 20;7:200. doi: 10.3389/fcell.2019.00200. eCollection 2019.


Spurious HbA1c results in patients with diabetes treated with dapsone.

Aljenaee K, Hakami O, Davenport C, Farrell G, Tun TK, Pazderska A, Phelan N, Healy ML, Sreenan S, McDermott JH.

Endocrinol Diabetes Metab Case Rep. 2019 Sep 27;2019. pii: EDM190027. doi: 10.1530/EDM-19-0027. [Epub ahead of print]


Universal and Non-universal Features of Musical Pitch Perception Revealed by Singing.

Jacoby N, Undurraga EA, McPherson MJ, Valdés J, Ossandón T, McDermott JH.

Curr Biol. 2019 Oct 7;29(19):3229-3243.e12. doi: 10.1016/j.cub.2019.08.020. Epub 2019 Sep 19.


The strand-biased mitochondrial DNA methylome and its regulation by DNMT3A.

Dou X, Boyd-Kirkup JD, McDermott J, Zhang X, Li F, Rong B, Zhang R, Miao B, Chen P, Cheng H, Xue J, Bennett D, Wong J, Lan F, Han JJ.

Genome Res. 2019 Oct;29(10):1622-1634. doi: 10.1101/gr.234021.117. Epub 2019 Sep 19.


Unified feature association networks through integration of transcriptomic and proteomic data.

McClure RS, Wendler JP, Adkins JN, Swanstrom J, Baric R, Kaiser BLD, Oxford KL, Waters KM, McDermott JE.

PLoS Comput Biol. 2019 Sep 17;15(9):e1007241. doi: 10.1371/journal.pcbi.1007241. eCollection 2019 Sep.


Development of consonance preferences in Western listeners.

Weiss MW, Cirelli LK, McDermott JH, Trehub SE.

J Exp Psychol Gen. 2019 Sep 12. doi: 10.1037/xge0000680. [Epub ahead of print]


Management of Indiana pouch stones through a percutaneous approach: A single center experience.

Öztürk M, McDermott JC, Laeseke PF, Nakada SY, Hedican SP, Best SL, Kleedehn MG.

Turk J Urol. 2019 Sep 1;45(5):366-371. doi: 10.5152/tud.2019.19049.


Accurate loop calling for 3D genomic data with cLoops.

Cao Y, Chen Z, Chen X, Ai D, Chen G, McDermott J, Huang Y, Xiaoxiao G, Han JJ.

Bioinformatics. 2019 Aug 22. pii: btz651. doi: 10.1093/bioinformatics/btz651. [Epub ahead of print]


Invariance to background noise as a signature of non-primary auditory cortex.

Kell AJE, McDermott JH.

Nat Commun. 2019 Sep 2;10(1):3958. doi: 10.1038/s41467-019-11710-y.


Utilization of Left Ventricular Assist Devices in Vulnerable Adults Across Medicaid Expansion.

Ehsan A, Zeymo A, McDermott J, Shara NM, Sellke FW, Yousefzai R, Al-Refaie WB.

J Surg Res. 2019 Nov;243:503-508. doi: 10.1016/j.jss.2019.05.015. Epub 2019 Aug 1.


TNAP limits TGF-β-dependent cardiac and skeletal muscle fibrosis by inactivating the SMAD2/3 transcription factors.

Arnò B, Galli F, Roostalu U, Aldeiri BM, Miyake T, Albertini A, Bragg L, Prehar S, McDermott JC, Cartwright EJ, Cossu G.

J Cell Sci. 2019 Aug 8;132(15). pii: jcs234948. doi: 10.1242/jcs.234948.


Effects of a topically applied anaesthetic on the behaviour, pain sensitivity and weight gain of dairy calves following thermocautery disbudding with a local anaesthetic.

Cuttance EL, Mason WA, Yang DA, Laven RA, McDermott J, Inglis K.

N Z Vet J. 2019 Nov;67(6):295-305. doi: 10.1080/00480169.2019.1640651. Epub 2019 Aug 7.


An Integrative Analysis of Tumor Proteomic and Phosphoproteomic Profiles to Examine the Relationships Between Kinase Activity and Phosphorylation.

Arshad OA, Danna V, Petyuk VA, Piehowski PD, Liu T, Rodland KD, McDermott JE.

Mol Cell Proteomics. 2019 Aug 9;18(8 suppl 1):S26-S36. doi: 10.1074/mcp.RA119.001540. Epub 2019 Jun 21.


Expansion coverage and preferential utilization of cancer surgery among racial and ethnic minorities and low-income groups.

Crocker AB, Zeymo A, McDermott J, Xiao D, Watson TJ, DeLeire T, Shara N, Chan KS, Al-Refaie WB.

Surgery. 2019 Sep;166(3):386-391. doi: 10.1016/j.surg.2019.04.018. Epub 2019 Jun 15.


Prediction of bacterial E3 ubiquitin ligase effectors using reduced amino acid peptide fingerprinting.

McDermott JE, Cort JR, Nakayasu ES, Pruneda JN, Overall C, Adkins JN.

PeerJ. 2019 Jun 7;7:e7055. doi: 10.7717/peerj.7055. eCollection 2019.


Phosphoproteome Analysis Reveals Estrogen-ER Pathway as a Modulator of mTOR Activity Via DEPTOR.

Cuesta R, Gritsenko MA, Petyuk VA, Shukla AK, Tsai CF, Liu T, McDermott JE, Holz MK.

Mol Cell Proteomics. 2019 Aug;18(8):1607-1618. doi: 10.1074/mcp.RA119.001506. Epub 2019 Jun 12.


Divergence in the functional organization of human and macaque auditory cortex revealed by fMRI responses to harmonic tones.

Norman-Haignere SV, Kanwisher N, McDermott JH, Conway BR.

Nat Neurosci. 2019 Jul;22(7):1057-1060. doi: 10.1038/s41593-019-0410-7. Epub 2019 Jun 10.


Effects of Sleep Extension on Inhibitory Control in Children With ADHD: A Pilot Study.

Cremone-Caira A, Root H, Harvey EA, McDermott JM, Spencer RMC.

J Atten Disord. 2019 May 29:1087054719851575. doi: 10.1177/1087054719851575. [Epub ahead of print]


Ribonucleoprotein Capture by in Vivo Expression of a Designer Pentatricopeptide Repeat Protein in Arabidopsis.

McDermott JJ, Watkins KP, Williams-Carrier R, Barkan A.

Plant Cell. 2019 Aug;31(8):1723-1733. doi: 10.1105/tpc.19.00177. Epub 2019 May 23.


Smad7:β-catenin complex regulates myogenic gene transcription.

Tripathi S, Miyake T, McDermott JC.

Cell Death Dis. 2019 May 16;10(6):387. doi: 10.1038/s41419-019-1615-0.


Dose Escalation Study to Assess the Pharmacokinetic Parameters of a Nano-amorphous Oral Sirolimus Formulation in Healthy Volunteers.

Basa-Dénes O, Angi R, Kárpáti B, Jordán T, Ötvös Z, Erdősi N, Ujhelyi A, Ordasi B, Molnár L, McDermott J, Roe C, McKenzie L, Solymosi T, Heltovics G, Glavinas H.

Eur J Drug Metab Pharmacokinet. 2019 May 14. doi: 10.1007/s13318-019-00562-y. [Epub ahead of print]


Proteogenomic Analysis of Human Colon Cancer Reveals New Therapeutic Opportunities.

Vasaikar S, Huang C, Wang X, Petyuk VA, Savage SR, Wen B, Dou Y, Zhang Y, Shi Z, Arshad OA, Gritsenko MA, Zimmerman LJ, McDermott JE, Clauss TR, Moore RJ, Zhao R, Monroe ME, Wang YT, Chambers MC, Slebos RJC, Lau KS, Mo Q, Ding L, Ellis M, Thiagarajan M, Kinsinger CR, Rodriguez H, Smith RD, Rodland KD, Liebler DC, Liu T, Zhang B; Clinical Proteomic Tumor Analysis Consortium.

Cell. 2019 May 2;177(4):1035-1049.e19. doi: 10.1016/j.cell.2019.03.030. Epub 2019 Apr 25.


Epidemiology of Head and Neck Squamous Cell Carcinomas: Impact on Staging and Prevention Strategies.

McDermott JD, Bowles DW.

Curr Treat Options Oncol. 2019 Apr 22;20(5):43. doi: 10.1007/s11864-019-0650-5.


Discrepancies in the Tumor Microenvironment of Spontaneous and Orthotopic Murine Models of Pancreatic Cancer Uncover a New Immunostimulatory Phenotype for B Cells.

Spear S, Candido JB, McDermott JR, Ghirelli C, Maniati E, Beers SA, Balkwill FR, Kocher HM, Capasso M.

Front Immunol. 2019 Mar 27;10:542. doi: 10.3389/fimmu.2019.00542. eCollection 2019.


A review of the propriety of thyroid ultrasound referrals and their follow-up burden.

Davenport C, Alderson J, Yu IG, Magner AC, M O'Brien D, Ghiollagain MN, Kileen S, Heneghan M, Sabah M, Leen E, McDermott JH, Sreenan S, Hickey N, Kyaw-Tun T.

Endocrine. 2019 Sep;65(3):595-600. doi: 10.1007/s12020-019-01920-1. Epub 2019 Apr 6.


Deep neural network models of sensory systems: windows onto the role of task constraints.

Kell AJ, McDermott JH.

Curr Opin Neurobiol. 2019 Apr;55:121-132. doi: 10.1016/j.conb.2019.02.003. Epub 2019 Mar 15. Review.


Across-species differences in pitch perception are consistent with differences in cochlear filtering.

Walker KM, Gonzalez R, Kang JZ, McDermott JH, King AJ.

Elife. 2019 Mar 15;8. pii: e41626. doi: 10.7554/eLife.41626.


Statin use associated with improved overall and cancer specific survival in patients with head and neck cancer.

Gupta A, Stokes W, Eguchi M, Hararah M, Amini A, Mueller A, Morgan R, Bradley C, Raben D, McDermott J, Karam SD.

Oral Oncol. 2019 Mar;90:54-66. doi: 10.1016/j.oraloncology.2019.01.019. Epub 2019 Feb 4.


A case of pembrolizumab-induced severe DKA and hypothyroidism in a patient with metastatic melanoma.

Hakami OA, Ioana J, Ahmad S, Tun TK, Sreenan S, McDermott JH.

Endocrinol Diabetes Metab Case Rep. 2019 Mar 5;2019. pii: EDM180153. doi: 10.1530/EDM-18-0153. [Epub ahead of print]


Extracellular signal-regulated kinases mediate the enhancing effects of inflammatory mediators on resurgent currents in dorsal root ganglion neurons.

Wu B, McDermott JS, Krajewski JL, Knopp KL, Nisenbaum ES, Cummins TR, Tan ZY.

Mol Pain. 2019 Jan-Dec;15:1744806919837104. doi: 10.1177/1744806919837104.


Evaluating Dissemination of Adequate Lymphadenectomy for Gastric Cancer in the USA.

Villano AM, Zeymo A, McDermott J, Crocker A, Zeck J, Chan KS, Shara N, Kim S, Al-Refaie WB.

J Gastrointest Surg. 2019 Feb 20. doi: 10.1007/s11605-019-04138-8. [Epub ahead of print]


Development of inhibitory control during childhood and its relations to early temperament and later social anxiety: unique insights provided by latent growth modeling and signal detection theory.

Troller-Renfree SV, Buzzell GA, Bowers ME, Salo VC, Forman-Alberti A, Smith E, Papp LJ, McDermott JM, Pine DS, Henderson HA, Fox NA.

J Child Psychol Psychiatry. 2019 Jun;60(6):622-629. doi: 10.1111/jcpp.13025. Epub 2019 Feb 18.


Immune Cell Types and Secreted Factors Contributing to Inflammation-to-Cancer Transition and Immune Therapy Response.

Chen X, Xu C, Hong S, Xia X, Cao Y, McDermott J, Mu Y, Han JJ.

Cell Rep. 2019 Feb 12;26(7):1965-1977.e4. doi: 10.1016/j.celrep.2019.01.080.


Preparation, Pre-clinical and Clinical Evaluation of a Novel Rapidly Absorbed Celecoxib Formulation.

Angi R, Solymosi T, Erdősi N, Jordán T, Kárpáti B, Basa-Dénes O, Ujhelyi A, McDermott J, Roe C, Mair S, Ötvös Z, Molnár L, Glavinas H.

AAPS PharmSciTech. 2019 Jan 25;20(2):90. doi: 10.1208/s12249-018-1270-2.


Spatially clustering de novo variants in CYFIP2, encoding the cytoplasmic FMRP interacting protein 2, cause intellectual disability and seizures.

Zweier M, Begemann A, McWalter K, Cho MT, Abela L, Banka S, Behring B, Berger A, Brown CW, Carneiro M, Chen J, Cooper GM; Deciphering Developmental Disorders (DDD) Study, Finnila CR, Guillen Sacoto MJ, Henderson A, Hüffmeier U, Joset P, Kerr B, Lesca G, Leszinski GS, McDermott JH, Meltzer MR, Monaghan KG, Mostafavi R, Õunap K, Plecko B, Powis Z, Purcarin G, Reimand T, Riedhammer KM, Schreiber JM, Sirsi D, Wierenga KJ, Wojcik MH, Papuc SM, Steindl K, Sticht H, Rauch A.

Eur J Hum Genet. 2019 May;27(5):747-759. doi: 10.1038/s41431-018-0331-z. Epub 2019 Jan 21.


Detection of hepatitis C virus in an exhumed body identified the origin of a nosocomial transmission that caused multiple fatal diseases.

McDermott J, Parisi SG, Martini I, Boldrin C, Franchin E, Dal Bello F, Gianelli Castiglione A, Boeri E, Sampaolo M, Basso M, Menegazzi P, Tagliaferro L, Palù G, Varnier OE.

J Hosp Infect. 2019 Jul;102(3):332-336. doi: 10.1016/j.jhin.2019.01.004. Epub 2019 Jan 8.


Effects of RNA structure and salt concentration on the affinity and kinetics of interactions between pentatricopeptide repeat proteins and their RNA ligands.

McDermott JJ, Civic B, Barkan A.

PLoS One. 2018 Dec 21;13(12):e0209713. doi: 10.1371/journal.pone.0209713. eCollection 2018.


Regionalization of Retroperitoneal Sarcoma Surgery to High-Volume Hospitals: Missed Opportunities for Outcome Improvement.

Villano AM, Zeymo A, McDermott J, Barrak D, Unger KR, Shara NM, Chan KS, Al-Refaie WB.

J Oncol Pract. 2019 Mar;15(3):e247-e261. doi: 10.1200/JOP.18.00349. Epub 2018 Dec 14.


Clocks in the clinic: circadian rhythms in health and disease.

Kelly RM, Healy U, Sreenan S, McDermott JH, Coogan AN.

Postgrad Med J. 2018 Nov;94(1117):653-658. doi: 10.1136/postgradmedj-2018-135719. Epub 2018 Dec 6. Review.


Neural responses to natural and model-matched stimuli reveal distinct computations in primary and nonprimary auditory cortex.

Norman-Haignere SV, McDermott JH.

PLoS Biol. 2018 Dec 3;16(12):e2005127. doi: 10.1371/journal.pbio.2005127. eCollection 2018 Dec.


Widespread roles of enhancer-like transposable elements in cell identity and long-range genomic interactions.

Cao Y, Chen G, Wu G, Zhang X, McDermott J, Chen X, Xu C, Jiang Q, Chen Z, Zeng Y, Ai D, Huang Y, Han JJ.

Genome Res. 2019 Jan;29(1):40-52. doi: 10.1101/gr.235747.118. Epub 2018 Nov 19.


Association Between Lymph Node Ratio and Recurrence and Survival Outcomes in Patients With Oral Cavity Cancer.

Ding D, Stokes W, Eguchi M, Hararah M, Sumner W, Amini A, Goddard J, Somerset H, Bradley C, McDermott J, Raben D, Karam SD.

JAMA Otolaryngol Head Neck Surg. 2019 Jan 1;145(1):53-61. doi: 10.1001/jamaoto.2018.2974.


Short- and Long-term Opioid Use in Patients with Oral and Oropharynx Cancer.

McDermott JD, Eguchi M, Stokes WA, Amini A, Hararah M, Ding D, Valentine A, Bradley CJ, Karam SD.

Otolaryngol Head Neck Surg. 2019 Mar;160(3):409-419. doi: 10.1177/0194599818808513. Epub 2018 Nov 6.


The Prediabetes Diet Plan: How to Reverse Prediabetes and Prevent Diabetes Through Healthy Eating and Exercise.

McDermott J, Rentzepis P, Kwon J.

Clin Diabetes. 2018 Oct;36(4):334-335. doi: 10.2337/cd18-0073. No abstract available.


FMRP recruitment of β-catenin to the translation pre-initiation complex represses translation.

Ehyai S, Miyake T, Williams D, Vinayak J, Bayfield MA, McDermott JC.

EMBO Rep. 2018 Dec;19(12). pii: e45536. doi: 10.15252/embr.201745536. Epub 2018 Oct 25.


Everolimus Use for Intolerance or Failure of Baseline Immunosuppression in Adult Heart and Lung Transplantation.

Kelsh SE, Girgis R, Dickinson M, McDermott JK.

Ann Transplant. 2018 Oct 23;23:744-750. doi: 10.12659/AOT.910952.


Improving network inference algorithms using resampling methods.

Colby SM, McClure RS, Overall CC, Renslow RS, McDermott JE.

BMC Bioinformatics. 2018 Oct 12;19(1):376. doi: 10.1186/s12859-018-2402-0.


Accurate Drug Repositioning through Non-tissue-Specific Core Signatures from Cancer Transcriptomes.

Xu C, Ai D, Shi D, Suo S, Chen X, Yan Y, Cao Y, Zhang R, Sun N, Chen W, McDermott J, Zhang S, Zeng Y, Han JJ.

Cell Rep. 2018 Oct 9;25(2):523-535.e5. doi: 10.1016/j.celrep.2018.09.031.


Comparing outcomes of concurrent chemotherapy regimens in patients 65 years old or older with locally advanced oropharyngeal carcinoma.

Amini A, Eguchi M, Jones BL, Stokes WA, Gupta A, McDermott JD, Massarelli E, Bradley CJ, Karam SD.

Cancer. 2018 Nov 15;124(22):4322-4331. doi: 10.1002/cncr.31740. Epub 2018 Oct 6.


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