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Items: 1 to 50 of 100

1.

The gut of the finch: uniqueness of the gut microbiome of the Galápagos vampire finch.

Michel AJ, Ward LM, Goffredi SK, Dawson KS, Baldassarre DT, Brenner A, Gotanda KM, McCormack JE, Mullin SW, O'Neill A, Tender GS, Uy JAC, Yu K, Orphan VJ, Chaves JA.

Microbiome. 2018 Sep 19;6(1):167. doi: 10.1186/s40168-018-0555-8.

2.

Pulmonary contusions in the elderly after blunt trauma: incidence and outcomes.

Bader A, Rahman U, Morris M, McCormack JE, Huang EC, Zawin M, Vosswinkel JA, Jawa RS.

J Surg Res. 2018 Oct;230:110-116. doi: 10.1016/j.jss.2018.04.049. Epub 2018 May 25.

PMID:
30100025
3.

Genome-wide SNP data and morphology support the distinction of two new species of Kovarikia Soleglad, Fet & Graham, 2014 endemic to California (Scorpiones, Vaejovidae).

Bryson RW Jr, Wood DA, Graham MR, Soleglad ME, McCormack JE.

Zookeys. 2018 Feb 22;(739):79-106. doi: 10.3897/zookeys.739.20628. eCollection 2018.

4.

Phylogenomic insights into the diversification of salamanders in the Isthmura bellii group across the Mexican highlands.

Bryson RW Jr, Zarza E, Grummer JA, Parra-Olea G, Flores-Villela O, Klicka J, McCormack JE.

Mol Phylogenet Evol. 2018 Aug;125:78-84. doi: 10.1016/j.ympev.2018.03.024. Epub 2018 Mar 16.

PMID:
29555294
5.

Admission of elderly blunt thoracic trauma patients directly to the intensive care unit improves outcomes.

Pyke OJ Jr, Rubano JA, Vosswinkel JA, McCormack JE, Huang EC, Jawa RS.

J Surg Res. 2017 Nov;219:334-340. doi: 10.1016/j.jss.2017.06.054.

PMID:
29078902
6.

Phylogenetic relationships of diurnal, phytotelm-breeding Melanophryniscus (Anura: Bufonidae) based on mitogenomic data.

Pie MR, Ströher PR, Belmonte-Lopes R, Bornschein MR, Ribeiro LF, Faircloth BC, McCormack JE.

Gene. 2017 Sep 10;628:194-199. doi: 10.1016/j.gene.2017.07.048. Epub 2017 Jul 15.

7.

Risk assessment of the blunt trauma victim: The role of the quick Sequential Organ Failure Assessment Score (qSOFA).

Jawa RS, Vosswinkel JA, McCormack JE, Huang EC, Thode HC Jr, Shapiro MJ, Singer AJ.

Am J Surg. 2017 Sep;214(3):397-401. doi: 10.1016/j.amjsurg.2017.05.011. Epub 2017 Jun 8.

PMID:
28622837
8.

Extremity compartment syndrome following blunt trauma: a level I trauma center's 5-year experience.

Zuchelli D, Divaris N, McCormack JE, Huang EC, Chaudhary ND, Vosswinkel JA, Jawa RS.

J Surg Res. 2017 Sep;217:131-136. doi: 10.1016/j.jss.2017.05.012. Epub 2017 May 10.

PMID:
28595814
9.

Spinal Fractures in Older Adult Patients Admitted After Low-Level Falls: 10-Year Incidence and Outcomes.

Jawa RS, Singer AJ, Rutigliano DN, McCormack JE, Huang EC, Shapiro MJ, Fields SD, Morelli BN, Vosswinkel JA.

J Am Geriatr Soc. 2017 May;65(5):909-915. doi: 10.1111/jgs.14669. Epub 2016 Dec 2.

PMID:
27910090
10.

Implantable cardioverter defibrillators and permanent pacemakers: prevalence and patient outcomes after trauma.

Altieri MS, Almasry I, Jones T, McPhee C, McCormack JE, Huang EC, Eckardt P, Shapiro MJ, Eckardt S, Vosswinkel JA, Jawa RS.

Am J Surg. 2016 Nov;212(5):953-960. doi: 10.1016/j.amjsurg.2016.07.013. Epub 2016 Aug 4.

PMID:
27594656
11.

High phylogenetic utility of an ultraconserved element probe set designed for Arachnida.

Starrett J, Derkarabetian S, Hedin M, Bryson RW Jr, McCormack JE, Faircloth BC.

Mol Ecol Resour. 2017 Jul;17(4):812-823. doi: 10.1111/1755-0998.12621. Epub 2016 Nov 19.

PMID:
27768256
12.

Hidden histories of gene flow in highland birds revealed with genomic markers.

Zarza E, Faircloth BC, Tsai WL, Bryson RW Jr, Klicka J, McCormack JE.

Mol Ecol. 2016 Oct;25(20):5144-5157. doi: 10.1111/mec.13813. Epub 2016 Sep 12.

PMID:
27543758
13.

Genomic data reveal ancient microendemism in forest scorpions across the California Floristic Province.

Bryson RW Jr, Savary WE, Zellmer AJ, Bury RB, McCormack JE.

Mol Ecol. 2016 Aug;25(15):3731-51. doi: 10.1111/mec.13707. Epub 2016 Jul 4.

PMID:
27238387
14.

Tranexamic Acid Use in United States Trauma Centers: A National Survey.

Jawa RS, Singer A, Mccormack JE, Huang EC, Rutigliano DN, Vosswinkel JA.

Am Surg. 2016 May;82(5):439-47.

PMID:
27215726
15.

Unplanned intensive care unit admission following trauma.

Rubano JA, Vosswinkel JA, McCormack JE, Huang EC, Shapiro MJ, Jawa RS.

J Crit Care. 2016 Jun;33:174-9. doi: 10.1016/j.jcrc.2016.02.012. Epub 2016 Feb 24.

PMID:
26979911
16.

Implementing and testing the multispecies coalescent model: A valuable paradigm for phylogenomics.

Edwards SV, Xi Z, Janke A, Faircloth BC, McCormack JE, Glenn TC, Zhong B, Wu S, Lemmon EM, Lemmon AR, Leaché AD, Liu L, Davis CC.

Mol Phylogenet Evol. 2016 Jan;94(Pt A):447-62. doi: 10.1016/j.ympev.2015.10.027. Epub 2015 Oct 27. Review.

17.

Sequence capture of ultraconserved elements from bird museum specimens.

McCormack JE, Tsai WL, Faircloth BC.

Mol Ecol Resour. 2016 Sep;16(5):1189-203. doi: 10.1111/1755-0998.12466. Epub 2015 Oct 24.

PMID:
26391430
18.

Preadmission Do Not Resuscitate advanced directive is associated with adverse outcomes following acute traumatic injury.

Jawa RS, Shapiro MJ, McCormack JE, Huang EC, Rutigliano DN, Vosswinkel JA.

Am J Surg. 2015 Nov;210(5):814-21. doi: 10.1016/j.amjsurg.2015.04.007. Epub 2015 Jun 3.

PMID:
26116324
19.

Outcomes following prolonged mechanical ventilation: analysis of a countywide trauma registry.

Rubano JA, Paccione MF, Rutigliano DN, Vosswinkel JA, McCormack JE, Huang EC, Yang J, Shapiro MJ, Jawa RS.

J Trauma Acute Care Surg. 2015 Feb;78(2):289-94. doi: 10.1097/TA.0000000000000515.

PMID:
25757112
20.

The drivers of tropical speciation.

Smith BT, McCormack JE, Cuervo AM, Hickerson MJ, Aleixo A, Cadena CD, Pérez-Emán J, Burney CW, Xie X, Harvey MG, Faircloth BC, Glenn TC, Derryberry EP, Prejean J, Fields S, Brumfield RT.

Nature. 2014 Nov 20;515(7527):406-9. doi: 10.1038/nature13687. Epub 2014 Sep 10.

PMID:
25209666
21.

Early unplanned hospital readmission after acute traumatic injury: the experience at a state-designated level-I trauma center.

Copertino LM, McCormack JE, Rutigliano DN, Huang EC, Shapiro MJ, Vosswinkel JA, Jawa RS.

Am J Surg. 2015 Feb;209(2):268-73. doi: 10.1016/j.amjsurg.2014.06.026. Epub 2014 Aug 7.

PMID:
25194759
22.

Speciation in Western Scrub-Jays, Haldane's rule, and genetic clines in secondary contact.

Gowen FC, Maley JM, Cicero C, Peterson AT, Faircloth BC, Warr TC, McCormack JE.

BMC Evol Biol. 2014 Jun 17;14:135. doi: 10.1186/1471-2148-14-135.

23.

Next-generation phylogenetics takes root.

McCormack JE, Faircloth BC.

Mol Ecol. 2013 Jan;22(1):19-20. No abstract available.

PMID:
23383410
24.

A phylogeny of birds based on over 1,500 loci collected by target enrichment and high-throughput sequencing.

McCormack JE, Harvey MG, Faircloth BC, Crawford NG, Glenn TC, Brumfield RT.

PLoS One. 2013;8(1):e54848. doi: 10.1371/journal.pone.0054848. Epub 2013 Jan 29.

25.

More than 1000 ultraconserved elements provide evidence that turtles are the sister group of archosaurs.

Crawford NG, Faircloth BC, McCormack JE, Brumfield RT, Winker K, Glenn TC.

Biol Lett. 2012 Oct 23;8(5):783-6. doi: 10.1098/rsbl.2012.0331. Epub 2012 May 16.

26.

Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes.

St John JA, Braun EL, Isberg SR, Miles LG, Chong AY, Gongora J, Dalzell P, Moran C, Bed'hom B, Abzhanov A, Burgess SC, Cooksey AM, Castoe TA, Crawford NG, Densmore LD, Drew JC, Edwards SV, Faircloth BC, Fujita MK, Greenwold MJ, Hoffmann FG, Howard JM, Iguchi T, Janes DE, Khan SY, Kohno S, de Koning AJ, Lance SL, McCarthy FM, McCormack JE, Merchant ME, Peterson DG, Pollock DD, Pourmand N, Raney BJ, Roessler KA, Sanford JR, Sawyer RH, Schmidt CJ, Triplett EW, Tuberville TD, Venegas-Anaya M, Howard JT, Jarvis ED, Guillette LJ Jr, Glenn TC, Green RE, Ray DA.

Genome Biol. 2012 Jan 31;13(1):415. doi: 10.1186/gb-2012-13-1-415.

27.

Ultraconserved elements anchor thousands of genetic markers spanning multiple evolutionary timescales.

Faircloth BC, McCormack JE, Crawford NG, Harvey MG, Brumfield RT, Glenn TC.

Syst Biol. 2012 Oct;61(5):717-26. doi: 10.1093/sysbio/sys004. Epub 2012 Jan 9.

PMID:
22232343
28.

Ultraconserved elements are novel phylogenomic markers that resolve placental mammal phylogeny when combined with species-tree analysis.

McCormack JE, Faircloth BC, Crawford NG, Gowaty PA, Brumfield RT, Glenn TC.

Genome Res. 2012 Apr;22(4):746-54. doi: 10.1101/gr.125864.111. Epub 2011 Dec 29.

29.

Applications of next-generation sequencing to phylogeography and phylogenetics.

McCormack JE, Hird SM, Zellmer AJ, Carstens BC, Brumfield RT.

Mol Phylogenet Evol. 2013 Feb;66(2):526-38. doi: 10.1016/j.ympev.2011.12.007. Epub 2011 Dec 14. Review.

PMID:
22197804
30.

Next-generation sequencing reveals phylogeographic structure and a species tree for recent bird divergences.

McCormack JE, Maley JM, Hird SM, Derryberry EP, Graves GR, Brumfield RT.

Mol Phylogenet Evol. 2012 Jan;62(1):397-406. doi: 10.1016/j.ympev.2011.10.012. Epub 2011 Oct 31. Erratum in: Mol Phylogenet Evol. 2013 Jan;66(1):440.

PMID:
22063264
31.

Genetic admixture in multidimensional environmental space: asymmetrical niche similarity promotes gene flow in armadillos (Dasypus novemcinctus).

Arteaga MC, McCormack JE, Eguiarte LE, Medellín RA.

Evolution. 2011 Sep;65(9):2470-80. doi: 10.1111/j.1558-5646.2011.01329.x. Epub 2011 May 17.

PMID:
21884050
32.

The relationship between annual hospital volume of trauma patients and in-hospital mortality in New York State.

Marx WH, Simon R, O'Neill P, Shapiro MJ, Cooper AC, Farrell LS, McCormack JE, Bessey PQ, Hannan E.

J Trauma. 2011 Aug;71(2):339-45; discussion 345-6. doi: 10.1097/TA.0b013e3182214055.

PMID:
21825936
33.

Calibrating divergence times on species trees versus gene trees: implications for speciation history of Aphelocoma jays.

McCormack JE, Heled J, Delaney KS, Peterson AT, Knowles LL.

Evolution. 2011 Jan;65(1):184-202. doi: 10.1111/j.1558-5646.2010.01097.x.

34.

Maximum likelihood estimates of species trees: how accuracy of phylogenetic inference depends upon the divergence history and sampling design.

McCormack JE, Huang H, Knowles LL.

Syst Biol. 2009 Oct;58(5):501-8. doi: 10.1093/sysbio/syp045. Epub 2009 Aug 20.

PMID:
20525604
35.

The association between hypothermia, prehospital cooling, and mortality in burn victims.

Singer AJ, Taira BR, Thode HC Jr, McCormack JE, Shapiro M, Aydin A, Lee C.

Acad Emerg Med. 2010 Apr;17(4):456-9. doi: 10.1111/j.1553-2712.2010.00702.x.

36.

Does niche divergence accompany allopatric divergence in Aphelocoma jays as predicted under ecological speciation? Insights from tests with niche models.

McCormack JE, Zellmer AJ, Knowles LL.

Evolution. 2010 May;64(5):1231-44. doi: 10.1111/j.1558-5646.2009.00900.x. Epub 2009 Nov 17.

37.

The effect of adding a second helicopter on trauma-related mortality in a county-based trauma system.

Schiller J, McCormack JE, Tarsia V, Shapiro MJ, Singer AJ, Thode HC Jr, Henry MC.

Prehosp Emerg Care. 2009 Oct-Dec;13(4):437-43. doi: 10.1080/10903120903144825.

PMID:
19731154
38.

Ventilator-associated pneumonia in pediatric trauma patients.

Taira BR, Fenton KE, Lee TK, Meng H, McCormack JE, Huang E, Singer AJ, Scriven RJ, Shapiro MJ.

Pediatr Crit Care Med. 2009 Jul;10(4):491-4. doi: 10.1097/PCC.0b013e3181a3108d.

PMID:
19451852
39.

Landscape genetics of California mule deer (Odocoileus hemionus): the roles of ecological and historical factors in generating differentiation.

Pease KM, Freedman AH, Pollinger JP, McCormack JE, Buermann W, Rodzen J, Banks J, Meredith E, Bleich VC, Schaefer RJ, Jones K, Wayne RK.

Mol Ecol. 2009 May;18(9):1848-62. doi: 10.1111/j.1365-294X.2009.04112.x. Epub 2009 Mar 12.

PMID:
19302356
40.

Let the surgeon sleep: trauma team activation for severe hypotension.

Shapiro MJ, McCormack JE, Jen J.

J Trauma. 2008 Dec;65(6):1245-50; discussion 1250-2. doi: 10.1097/TA.0b013e31818c262f.

PMID:
19077608
41.

Integrating paleoecology and genetics of bird populations in two sky island archipelagos.

McCormack JE, Bowen BS, Smith TB.

BMC Biol. 2008 Jun 27;6:28. doi: 10.1186/1741-7007-6-28.

42.

Niche expansion leads to small-scale adaptive divergence along an elevation gradient in a medium-sized passerine bird.

McCormack JE, Smith TB.

Proc Biol Sci. 2008 Sep 22;275(1647):2155-64. doi: 10.1098/rspb.2008.0470.

43.

Speciation in the highlands of Mexico: genetic and phenotypic divergence in the Mexican jay (Aphelocoma ultramarina).

McCormack JE, Peterson AT, Bonaccorso E, Smith TB.

Mol Ecol. 2008 May;17(10):2505-21. doi: 10.1111/j.1365-294X.2008.03776.x. Epub 2008 Apr 21.

PMID:
18430143
44.

Venous thromboembolic events in hospitalized trauma patients.

Azu MC, McCormack JE, Huang EC, Lee TK, Shapiro MJ.

Am Surg. 2007 Dec;73(12):1228-31.

PMID:
18186377
45.

Recent postglacial range expansion drives the rapid diversification of a songbird lineage in the genus Junco.

Milá B, McCormack JE, Castañeda G, Wayne RK, Smith TB.

Proc Biol Sci. 2007 Nov 7;274(1626):2653-60.

46.

Decompressive craniectomy in pediatric patients with traumatic brain injury with intractable elevated intracranial pressure.

Rutigliano D, Egnor MR, Priebe CJ, McCormack JE, Strong N, Scriven RJ, Lee TK.

J Pediatr Surg. 2006 Jan;41(1):83-7; discussion 83-7.

PMID:
16410113
47.

Venous thromboembolic events in pediatric trauma patients: is prophylaxis necessary?

Azu MC, McCormack JE, Scriven RJ, Brebbia JS, Shapiro MJ, Lee TK.

J Trauma. 2005 Dec;59(6):1345-9.

PMID:
16394907
48.

Rapid prototyping of polymer microsystems via excimer laser ablation of polymeric moulds.

Jensen MF, McCormack JE, Helbo B, Christensen LH, Christensen TR, Geschke O.

Lab Chip. 2004 Aug;4(4):391-5. Epub 2004 May 12.

PMID:
15269810
49.

PRNP contains both intronic and upstream regulatory regions that may influence susceptibility to Creutzfeldt-Jakob Disease.

McCormack JE, Baybutt HN, Everington D, Will RG, Ironside JW, Manson JC.

Gene. 2002 Apr 17;288(1-2):139-46.

PMID:
12034503
50.

Approaches to enhancing the retroviral transduction of human synoviocytes.

Del Vecchio MA, Georgescu HI, McCormack JE, Robbins PD, Evans CH.

Arthritis Res. 2001;3(4):259-63. Epub 2001 May 18.

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