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Items: 42

1.

The GRHL2/ZEB Feedback Loop-A Key Axis in the Regulation of EMT in Breast Cancer.

Mooney SM, Talebian V, Jolly MK, Jia D, Gromala M, Levine H, McConkey BJ.

J Cell Biochem. 2017 Sep;118(9):2559-2570. doi: 10.1002/jcb.25974. Epub 2017 May 3.

PMID:
28266048
2.

Assessing the bioremediation potential of algal species indigenous to oil sands process-affected waters on mixtures of oil sands acid extractable organics.

Ruffell SE, Frank RA, Woodworth AP, Bragg LM, Bauer AE, Deeth LE, Müller KM, Farwell AJ, Dixon DG, Servos MR, McConkey BJ.

Ecotoxicol Environ Saf. 2016 Nov;133:373-80. doi: 10.1016/j.ecoenv.2016.07.034. Epub 2016 Aug 4.

PMID:
27497784
3.

An omics approach to rational feed: Enhancing growth in CHO cultures with NMR metabolomics and 2D-DIGE proteomics.

Blondeel EJM, Ho R, Schulze S, Sokolenko S, Guillemette SR, Slivac I, Durocher Y, Guillemette JG, McConkey BJ, Chang D, Aucoin MG.

J Biotechnol. 2016 Sep 20;234:127-138. doi: 10.1016/j.jbiotec.2016.07.027. Epub 2016 Aug 2.

PMID:
27496566
4.

Pathogen-secreted proteases activate a novel plant immune pathway.

Cheng Z, Li JF, Niu Y, Zhang XC, Woody OZ, Xiong Y, Djonović S, Millet Y, Bush J, McConkey BJ, Sheen J, Ausubel FM.

Nature. 2015 May 14;521(7551):213-6. doi: 10.1038/nature14243. Epub 2015 Mar 2.

5.

Pollux: platform independent error correction of single and mixed genomes.

Marinier E, Brown DG, McConkey BJ.

BMC Bioinformatics. 2015 Jan 16;16:10. doi: 10.1186/s12859-014-0435-6.

6.

Multisubstrate isotope labeling and metagenomic analysis of active soil bacterial communities.

Verastegui Y, Cheng J, Engel K, Kolczynski D, Mortimer S, Lavigne J, Montalibet J, Romantsov T, Hall M, McConkey BJ, Rose DR, Tomashek JJ, Scott BR, Charles TC, Neufeld JD.

MBio. 2014 Jul 15;5(4):e01157-14. doi: 10.1128/mBio.01157-14.

7.

New insights into 1-aminocyclopropane-1-carboxylate (ACC) deaminase phylogeny, evolution and ecological significance.

Nascimento FX, Rossi MJ, Soares CR, McConkey BJ, Glick BR.

PLoS One. 2014 Jun 6;9(6):e99168. doi: 10.1371/journal.pone.0099168. eCollection 2014.

8.

A novel non-canonical forkhead-associated (FHA) domain-binding interface mediates the interaction between Rad53 and Dbf4 proteins.

Matthews LA, Selvaratnam R, Jones DR, Akimoto M, McConkey BJ, Melacini G, Duncker BP, Guarné A.

J Biol Chem. 2014 Jan 31;289(5):2589-99. doi: 10.1074/jbc.M113.517060. Epub 2013 Nov 27.

9.

Prediction of molecular mimicry candidates in human pathogenic bacteria.

Doxey AC, McConkey BJ.

Virulence. 2013 Aug 15;4(6):453-66. doi: 10.4161/viru.25180. Epub 2013 May 28.

10.

Identification of plant growth-promoting bacteria-responsive proteins in cucumber roots under hypoxic stress using a proteomic approach.

Li J, McConkey BJ, Cheng Z, Guo S, Glick BR.

J Proteomics. 2013 Jun 12;84:119-31. doi: 10.1016/j.jprot.2013.03.011. Epub 2013 Apr 6.

PMID:
23568019
11.

Horizontal gene transfer contributed to the evolution of extracellular surface structures: the freshwater polyp Hydra is covered by a complex fibrous cuticle containing glycosaminoglycans and proteins of the PPOD and SWT (sweet tooth) families.

Böttger A, Doxey AC, Hess MW, Pfaller K, Salvenmoser W, Deutzmann R, Geissner A, Pauly B, Altstätter J, Münder S, Heim A, Gabius HJ, McConkey BJ, David CN.

PLoS One. 2012;7(12):e52278. doi: 10.1371/journal.pone.0052278. Epub 2012 Dec 27.

12.

Investigating the role of protein UnkG from the Pseudomonas putida UW4 in the ability of the bacterium to facilitate plant growth.

Jiang W, Cheng Z, McConkey BJ, Glick BR.

Curr Microbiol. 2013 Apr;66(4):331-6. doi: 10.1007/s00284-012-0279-0. Epub 2012 Dec 2.

PMID:
23212206
13.

The evolution of the class A scavenger receptors.

Whelan FJ, Meehan CJ, Golding GB, McConkey BJ, Bowdish DM.

BMC Evol Biol. 2012 Nov 27;12:227. doi: 10.1186/1471-2148-12-227.

14.

Toxic effects of oil sand naphthenic acids on the biomass accumulation of 21 potential phytoplankton remediation candidates.

Woodworth AP, Frank RA, McConkey BJ, Müller KM.

Ecotoxicol Environ Saf. 2012 Dec;86:156-61. doi: 10.1016/j.ecoenv.2012.09.007. Epub 2012 Sep 29.

PMID:
23031586
15.

A quantitative model of the initiation of DNA replication in Saccharomyces cerevisiae predicts the effects of system perturbations.

Gidvani RD, Sudmant P, Li G, DaSilva LF, McConkey BJ, Duncker BP, Ingalls BP.

BMC Syst Biol. 2012 Jun 27;6:78. doi: 10.1186/1752-0509-6-78.

16.

Effects of bacterial ACC deaminase on Brassica napus gene expression.

Stearns JC, Woody OZ, McConkey BJ, Glick BR.

Mol Plant Microbe Interact. 2012 May;25(5):668-76. doi: 10.1094/MPMI-08-11-0213.

17.

Modular evolution and the origins of symmetry: reconstruction of a three-fold symmetric globular protein.

Broom A, Doxey AC, Lobsanov YD, Berthin LG, Rose DR, Howell PL, McConkey BJ, Meiering EM.

Structure. 2012 Jan 11;20(1):161-71. doi: 10.1016/j.str.2011.10.021. Epub 2011 Dec 15.

18.

Nuclear targeting of methyl-recycling enzymes in Arabidopsis thaliana is mediated by specific protein interactions.

Lee S, Doxey AC, McConkey BJ, Moffatt BA.

Mol Plant. 2012 Jan;5(1):231-48. doi: 10.1093/mp/ssr083. Epub 2011 Oct 5.

19.

Differential chromatin proteomics of the MMS-induced DNA damage response in yeast.

Kim DR, Gidvani RD, Ingalls BP, Duncker BP, McConkey BJ.

Proteome Sci. 2011 Oct 4;9:62. doi: 10.1186/1477-5956-9-62.

20.

Proteomics analysis of chinese hamster ovary cells undergoing apoptosis during prolonged cultivation.

Wei YY, Naderi S, Meshram M, Budman H, Scharer JM, Ingalls BP, McConkey BJ.

Cytotechnology. 2011 Dec;63(6):663-77. doi: 10.1007/s10616-011-9385-2. Epub 2011 Aug 19.

21.

Structural motif screening reveals a novel, conserved carbohydrate-binding surface in the pathogenesis-related protein PR-5d.

Doxey AC, Cheng Z, Moffatt BA, McConkey BJ.

BMC Struct Biol. 2010 Aug 3;10:23. doi: 10.1186/1472-6807-10-23.

22.

Apoptosis induction by eIF5A1 involves activation of the intrinsic mitochondrial pathway.

Sun Z, Cheng Z, Taylor CA, McConkey BJ, Thompson JE.

J Cell Physiol. 2010 Jun;223(3):798-809. doi: 10.1002/jcp.22100.

PMID:
20232312
23.

Identification of myopia-related marker proteins in tilapia retinal, RPE, and choroidal tissue following induced form deprivation.

Jostrup R, Shen W, Burrows JT, Sivak JG, McConkey BJ, Singer TD.

Curr Eye Res. 2009 Nov;34(11):966-75. doi: 10.3109/02713680903244138.

PMID:
19958113
24.

Proteome reference map for the plant growth-promoting bacterium Pseudomonas putida UW4.

Cheng Z, Woody OZ, Song J, Glick BR, McConkey BJ.

Proteomics. 2009 Sep;9(17):4271-4. doi: 10.1002/pmic.200900142.

PMID:
19688754
25.

Identification of bacterial proteins mediating the interactions between Pseudomonas putida UW4 and Brassica napus (Canola).

Cheng Z, Duan J, Hao Y, McConkey BJ, Glick BR.

Mol Plant Microbe Interact. 2009 Jun;22(6):686-94. doi: 10.1094/MPMI-22-6-0686.

26.

Proteomic analysis of the response of the plant growth-promoting bacterium Pseudomonas putida UW4 to nickel stress.

Cheng Z, Wei YY, Sung WW, Glick BR, McConkey BJ.

Proteome Sci. 2009 May 7;7:18. doi: 10.1186/1477-5956-7-18.

27.

The origin recognition complex protein family.

Duncker BP, Chesnokov IN, McConkey BJ.

Genome Biol. 2009;10(3):214. doi: 10.1186/gb-2009-10-3-214. Epub 2009 Mar 17. Review.

28.

Assessing the evolution of gene expression using microarray data.

Woody OZ, Doxey AC, McConkey BJ.

Evol Bioinform Online. 2008 Apr 24;4:139-52.

29.

Insights into the evolutionary origins of clostridial neurotoxins from analysis of the Clostridium botulinum strain A neurotoxin gene cluster.

Doxey AC, Lynch MD, Müller KM, Meiering EM, McConkey BJ.

BMC Evol Biol. 2008 Nov 14;8:316. doi: 10.1186/1471-2148-8-316.

30.

Transcriptional regulation of ACC deaminase gene expression in Pseudomonas putida UW4.

Cheng Z, Duncker BP, McConkey BJ, Glick BR.

Can J Microbiol. 2008 Feb;54(2):128-36. doi: 10.1139/w07-128.

PMID:
18388982
31.

TARDBP mutations in individuals with sporadic and familial amyotrophic lateral sclerosis.

Kabashi E, Valdmanis PN, Dion P, Spiegelman D, McConkey BJ, Vande Velde C, Bouchard JP, Lacomblez L, Pochigaeva K, Salachas F, Pradat PF, Camu W, Meininger V, Dupre N, Rouleau GA.

Nat Genet. 2008 May;40(5):572-4. doi: 10.1038/ng.132. Epub 2008 Mar 30.

PMID:
18372902
32.

Functional divergence in the Arabidopsis beta-1,3-glucanase gene family inferred by phylogenetic reconstruction of expression states.

Doxey AC, Yaish MW, Moffatt BA, Griffith M, McConkey BJ.

Mol Biol Evol. 2007 Apr;24(4):1045-55. Epub 2007 Feb 1.

PMID:
17272678
33.

Systems level modeling of the cell cycle using budding yeast.

Ingalls BP, Duncker BP, Kim DR, McConkey BJ.

Cancer Inform. 2007 Dec 11;3:357-70.

34.

Ordered surface carbons distinguish antifreeze proteins and their ice-binding regions.

Doxey AC, Yaish MW, Griffith M, McConkey BJ.

Nat Biotechnol. 2006 Jul;24(7):852-5. Epub 2006 Jul 2.

PMID:
16823370
35.

Cold-active winter rye glucanases with ice-binding capacity.

Yaish MW, Doxey AC, McConkey BJ, Moffatt BA, Griffith M.

Plant Physiol. 2006 Aug;141(4):1459-72. Epub 2006 Jun 30.

36.

Importance of solvent accessibility and contact surfaces in modeling side-chain conformations in proteins.

Eyal E, Najmanovich R, McConkey BJ, Edelman M, Sobolev V.

J Comput Chem. 2004 Apr 15;25(5):712-24.

PMID:
14978714
37.

Discrimination of native protein structures using atom-atom contact scoring.

McConkey BJ, Sobolev V, Edelman M.

Proc Natl Acad Sci U S A. 2003 Mar 18;100(6):3215-20. Epub 2003 Mar 11.

38.

Quantification of protein surfaces, volumes and atom-atom contacts using a constrained Voronoi procedure.

McConkey BJ, Sobolev V, Edelman M.

Bioinformatics. 2002 Oct;18(10):1365-73.

PMID:
12376381
39.

Measurement of short- and long-term toxicity of polycyclic aromatic hydrocarbons using luminescent bacteria.

El-Alawi YS, McConkey BJ, George Dixon D, Greenberg BM.

Ecotoxicol Environ Saf. 2002 Jan;51(1):12-21.

PMID:
11800545
40.

Fractional simplex designs for interaction screening in complex mixtures.

McConkey BJ, Mezey PG, Dixon DG, Greenberg BM.

Biometrics. 2000 Sep;56(3):824-32.

PMID:
10985222
41.

Impacts of structural photomodification on the toxicity of environmental contaminants: anthracene photooxidation products.

Mallakin A, McConkey BJ, Miao G, McKibben B, Snieckus V, Dixon DG, Greenberg BM.

Ecotoxicol Environ Saf. 1999 Jun;43(2):204-12.

PMID:
10375423
42.

Photoinduced toxicity of three polycyclic aromatic hydrocarbons (fluoranthene, pyrene, and naphthalene) to the duckweed Lemna gibba L. G-3.

Ren L, Huang XD, McConkey BJ, Dixon DG, Greenberg BM.

Ecotoxicol Environ Saf. 1994 Jul;28(2):160-71.

PMID:
7525212

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