Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 163

1.

The RNA Modification Database, RNAMDB: 2011 update.

Cantara WA, Crain PF, Rozenski J, McCloskey JA, Harris KA, Zhang X, Vendeix FA, Fabris D, Agris PF.

Nucleic Acids Res. 2011 Jan;39(Database issue):D195-201. doi: 10.1093/nar/gkq1028. Epub 2010 Nov 10.

2.

Post-transcriptional modifications in the small subunit ribosomal RNA from Thermotoga maritima, including presence of a novel modified cytidine.

Guymon R, Pomerantz SC, Ison JN, Crain PF, McCloskey JA.

RNA. 2007 Mar;13(3):396-403. Epub 2007 Jan 25.

3.

A novel method for sequence placement of modified nucleotides in mixtures of transfer RNA.

Wagner TM, Nair V, Guymon R, Pomerantz SC, Crain PF, Davis DR, McCloskey JA.

Nucleic Acids Symp Ser (Oxf). 2004;(48):263-4.

PMID:
17150579
4.
5.
6.

N6-Acetyladenosine: a new modified nucleoside from Methanopyrus kandleri tRNA.

Sauerwald A, Sitaramaiah D, McCloskey JA, Söll D, Crain PF.

FEBS Lett. 2005 May 23;579(13):2807-10. Epub 2005 Apr 21.

7.

Number, position, and significance of the pseudouridines in the large subunit ribosomal RNA of Haloarcula marismortui and Deinococcus radiodurans.

Del Campo M, Recinos C, Yanez G, Pomerantz SC, Guymon R, Crain PF, McCloskey JA, Ofengand J.

RNA. 2005 Feb;11(2):210-9.

8.

The Small Subunit rRNA Modification Database.

McCloskey JA, Rozenski J.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D135-8.

9.

An aminoacyl-tRNA synthetase that specifically activates pyrrolysine.

Polycarpo C, Ambrogelly A, Bérubé A, Winbush SM, McCloskey JA, Crain PF, Wood JL, Söll D.

Proc Natl Acad Sci U S A. 2004 Aug 24;101(34):12450-4. Epub 2004 Aug 16.

10.

A truncated aminoacyl-tRNA synthetase modifies RNA.

Salazar JC, Ambrogelly A, Crain PF, McCloskey JA, Söll D.

Proc Natl Acad Sci U S A. 2004 May 18;101(20):7536-41. Epub 2004 Apr 19.

11.

Tandem mass spectrometry for structure assignments of wye nucleosides from transfer RNA.

Zhou S, Sitaramaiah D, Pomerantz SC, Crain PF, McCloskey JA.

Nucleosides Nucleotides Nucleic Acids. 2004;23(1-2):41-50.

PMID:
15043135
12.

Structures of two new "minimalist" modified nucleosides from archaeal tRNA.

Zhou S, Sitaramaiah D, Noon KR, Guymon R, Hashizume T, McCloskey JA.

Bioorg Chem. 2004 Apr;32(2):82-91.

PMID:
14990307
13.
14.

Posttranscriptional modification of transfer RNA in the submarine hyperthermophile Pyrolobus fumarii.

McCloskey JA, Liu XH, Crain PF, Bruenger E, Guymon R, Hashizume T, Stetter KO.

Nucleic Acids Symp Ser. 2000;(44):267-8.

PMID:
12903371
15.
16.

SOS: a simple interactive program for ab initio oligonucleotide sequencing by mass spectrometry.

Rozenski J, McCloskey JA.

J Am Soc Mass Spectrom. 2002 Mar;13(3):200-3.

PMID:
11908799
17.

Post-transcriptional modification in archaeal tRNAs: identities and phylogenetic relations of nucleotides from mesophilic and hyperthermophilic Methanococcales.

McCloskey JA, Graham DE, Zhou S, Crain PF, Ibba M, Konisky J, Söll D, Olsen GJ.

Nucleic Acids Res. 2001 Nov 15;29(22):4699-706.

18.

Identities and phylogenetic comparisons of posttranscriptional modifications in 16 S ribosomal RNA from Haloferax volcanii.

Kowalak JA, Bruenger E, Crain PF, McCloskey JA.

J Biol Chem. 2000 Aug 11;275(32):24484-9.

19.

Codon reading patterns in Drosophila melanogaster mitochondria based on their tRNA sequences: a unique wobble rule in animal mitochondria.

Tomita K, Ueda T, Ishiwa S, Crain PF, McCloskey JA, Watanabe K.

Nucleic Acids Res. 1999 Nov 1;27(21):4291-7.

20.

New techniques for the rapid characterization of oligonucleotides by mass spectrometry.

McCloskey JA, Whitehill AB, Rozenski J, Qiu F, Crain PF.

Nucleosides Nucleotides. 1999 Jun-Jul;18(6-7):1549-53.

PMID:
10474232
21.
22.

Determination of nearest neighbors in nucleic acids by mass spectrometry.

Rozenski J, McCloskey JA.

Anal Chem. 1999 Apr 1;71(7):1454-9.

PMID:
10204043
23.

The RNA Modification Database: 1999 update.

Rozenski J, Crain PF, McCloskey JA.

Nucleic Acids Res. 1999 Jan 1;27(1):196-7.

25.

Presence and location of modified nucleotides in Escherichia coli tmRNA: structural mimicry with tRNA acceptor branches.

Felden B, Hanawa K, Atkins JF, Himeno H, Muto A, Gesteland RF, McCloskey JA, Crain PF.

EMBO J. 1998 Jun 1;17(11):3188-96.

26.
27.

Applications of mass spectrometry to the characterization of oligonucleotides and nucleic acids.

Crain PF, McCloskey JA.

Curr Opin Biotechnol. 1998 Feb;9(1):25-34. Review.

PMID:
9503584
28.
29.

The RNA modification database--1998.

McCloskey JA, Crain PF.

Nucleic Acids Res. 1998 Jan 1;26(1):196-7.

30.

Biosynthesis of archaeosine, a novel derivative of 7-deazaguanosine specific to archaeal tRNA, proceeds via a pathway involving base replacement on the tRNA polynucleotide chain.

Watanabe M, Matsuo M, Tanaka S, Akimoto H, Asahi S, Nishimura S, Katze JR, Hashizume T, Crain PF, McCloskey JA, Okada N.

J Biol Chem. 1997 Aug 8;272(32):20146-51.

31.

Posttranscriptional modification of tRNA in psychrophilic bacteria.

Dalluge JJ, Hamamoto T, Horikoshi K, Morita RY, Stetter KO, McCloskey JA.

J Bacteriol. 1997 Mar;179(6):1918-23.

32.

Collision-induced dissociation of polyprotonated oligonucleotides produced by electrospray ionization.

Ni J, Mathews MA, McCloskey JA.

Rapid Commun Mass Spectrom. 1997;11(6):535-40.

PMID:
9149429
33.

The RNA modification database.

Crain PF, McCloskey JA.

Nucleic Acids Res. 1997 Jan 1;25(1):126-7.

34.

The effect of backbone charge on the collision-induced dissociation of oligonucleotides.

Bartlett MG, McCloskey JA, Manalili S, Griffey RH.

J Mass Spectrom. 1996 Nov;31(11):1277-83.

PMID:
8946735
35.
36.

Interpretation of oligonucleotide mass spectra for determination of sequence using electrospray ionization and tandem mass spectrometry.

Ni J, Pomerantz C, Rozenski J, Zhang Y, McCloskey JA.

Anal Chem. 1996 Jul 1;68(13):1989-99.

PMID:
9027217
38.
39.

Conformational flexibility in RNA: the role of dihydrouridine.

Dalluge JJ, Hashizume T, Sopchik AE, McCloskey JA, Davis DR.

Nucleic Acids Res. 1996 Mar 15;24(6):1073-9.

40.

Structural characterization of U*-1915 in domain IV from Escherichia coli 23S ribosomal RNA as 3-methylpseudouridine.

Kowalak JA, Bruenger E, Hashizume T, Peltier JM, Ofengand J, McCloskey JA.

Nucleic Acids Res. 1996 Feb 15;24(4):688-93.

41.

Structural feature of the initiator tRNA gene from Pyrodictium occultum and the thermal stability of its gene product, tRNA(imet).

Ushida C, Muramatsu T, Mizushima H, Ueda T, Watanabe K, Stetter KO, Crain PF, McCloskey JA, Kuchino Y.

Biochimie. 1996;78(10):847-55.

PMID:
9116054
42.

The RNA modification database.

Crain PF, McCloskey JA.

Nucleic Acids Res. 1996 Jan 1;24(1):98-9.

43.

Posttranscriptional modification of the central loop of domain V in Escherichia coli 23 S ribosomal RNA.

Kowalak JA, Bruenger E, McCloskey JA.

J Biol Chem. 1995 Jul 28;270(30):17758-64.

45.

Characterization of oligonucleotides and nucleic acids by mass spectrometry.

Limbach PA, Crain PF, McCloskey JA.

Curr Opin Biotechnol. 1995 Feb;6(1):96-102. Review.

PMID:
7534508
46.

Molecular mass measurement of intact ribonucleic acids via electrospray ionization quadrupole mass spectrometry.

Limbach PA, Crain PF, McCloskey JA.

J Am Soc Mass Spectrom. 1995 Jan;6(1):27-39. doi: 10.1016/1044-0305(94)00086-F.

PMID:
24222058
47.

Implications of a functional large ribosomal RNA with only three modified nucleotides.

Sirum-Connolly K, Peltier JM, Crain PF, McCloskey JA, Mason TL.

Biochimie. 1995;77(1-2):30-9.

PMID:
7541254
48.

Structures of posttranscriptionally modified nucleosides from RNA.

Limbach PA, Crain PF, Pomerantz SC, McCloskey JA.

Biochimie. 1995;77(1-2):135-8. No abstract available.

PMID:
7541251
49.

The single pseudouridine residue in Escherichia coli 16S RNA is located at position 516.

Bakin A, Kowalak JA, McCloskey JA, Ofengand J.

Nucleic Acids Res. 1994 Sep 11;22(18):3681-4.

50.

The role of posttranscriptional modification in stabilization of transfer RNA from hyperthermophiles.

Kowalak JA, Dalluge JJ, McCloskey JA, Stetter KO.

Biochemistry. 1994 Jun 28;33(25):7869-76.

PMID:
7516708

Supplemental Content

Loading ...
Support Center