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Rethinking the PDH Bypass and GABA Shunt as Thiamin-Deficiency Workarounds.

Joshi J, Folz J, Gregory JF, McCarty DR, Fiehn O, Hanson AD.

Plant Physiol. 2019 Aug 13. pii: pp.00857.2019. doi: 10.1104/pp.19.00857. [Epub ahead of print] No abstract available.


Maize defective kernel5 is a bacterial TamB homologue required for chloroplast envelope biogenesis.

Zhang J, Wu S, Boehlein SK, McCarty DR, Song G, Walley JW, Myers A, Settles AM.

J Cell Biol. 2019 Aug 5;218(8):2638-2658. doi: 10.1083/jcb.201807166. Epub 2019 Jun 24.


Effects of long-term exposure to elevated temperature on Zea mays endosperm development during grain fill.

Boehlein SK, Liu P, Webster A, Ribeiro C, Suzuki M, Wu S, Guan JC, Stewart JD, Tracy WF, Settles AM, McCarty DR, Koch KE, Hannah LC, Hennen-Bierwagen TA, Myers AM.

Plant J. 2019 Jul;99(1):23-40. doi: 10.1111/tpj.14283. Epub 2019 Mar 19.


The maize W22 genome provides a foundation for functional genomics and transposon biology.

Springer NM, Anderson SN, Andorf CM, Ahern KR, Bai F, Barad O, Barbazuk WB, Bass HW, Baruch K, Ben-Zvi G, Buckler ES, Bukowski R, Campbell MS, Cannon EKS, Chomet P, Dawe RK, Davenport R, Dooner HK, Du LH, Du C, Easterling KA, Gault C, Guan JC, Hunter CT, Jander G, Jiao Y, Koch KE, Kol G, Köllner TG, Kudo T, Li Q, Lu F, Mayfield-Jones D, Mei W, McCarty DR, Noshay JM, Portwood JL 2nd, Ronen G, Settles AM, Shem-Tov D, Shi J, Soifer I, Stein JC, Stitzer MC, Suzuki M, Vera DL, Vollbrecht E, Vrebalov JT, Ware D, Wei S, Wimalanathan K, Woodhouse MR, Xiong W, Brutnell TP.

Nat Genet. 2018 Sep;50(9):1282-1288. doi: 10.1038/s41588-018-0158-0. Epub 2018 Jul 30.


Identification of a metabolic disposal route for the oncometabolite S-(2-succino)cysteine in Bacillus subtilis.

Niehaus TD, Folz J, McCarty DR, Cooper AJL, Moraga Amador D, Fiehn O, Hanson AD.

J Biol Chem. 2018 May 25;293(21):8255-8263. doi: 10.1074/jbc.RA118.002925. Epub 2018 Apr 6.


Corrigendum: Divisions of labor in the thiamin biosynthetic pathway among organs of maize.

Guan JC, Hasnain G, Garrett TJ, Chase CD, Gregory J, Hanson AD, McCarty DR.

Front Plant Sci. 2018 Feb 20;9:148. doi: 10.3389/fpls.2018.00148. eCollection 2018.


A plastidial pantoate transporter with a potential role in pantothenate synthesis.

Huang L, Pyc M, Alseekh S, McCarty DR, de Crécy-Lagard V, Gregory JF 3rd, Henry CS, Fernie AR, Mullen RT, Hanson AD.

Biochem J. 2018 Feb 28;475(4):813-825. doi: 10.1042/BCJ20170883.


Restorer-of-Fertility Mutations Recovered in Transposon-Active Lines of S Male-Sterile Maize.

Gabay-Laughnan S, Settles AM, Hannah LC, Porch TG, Becraft PW, McCarty DR, Koch KE, Zhao L, Kamps TL, Chamusco KC, Chase CD.

G3 (Bethesda). 2018 Jan 4;8(1):291-302. doi: 10.1534/g3.117.300304.


Small kernel2 Encodes a Glutaminase in Vitamin B6 Biosynthesis Essential for Maize Seed Development.

Yang YZ, Ding S, Wang Y, Li CL, Shen Y, Meeley R, McCarty DR, Tan BC.

Plant Physiol. 2017 Jun;174(2):1127-1138. doi: 10.1104/pp.16.01295. Epub 2017 Apr 13.


Structure and Origin of the White Cap Locus and Its Role in Evolution of Grain Color in Maize.

Tan BC, Guan JC, Ding S, Wu S, Saunders JW, Koch KE, McCarty DR.

Genetics. 2017 May;206(1):135-150. doi: 10.1534/genetics.116.198911. Epub 2017 Feb 3.


Does Abiotic Stress Cause Functional B Vitamin Deficiency in Plants?

Hanson AD, Beaudoin GA, McCarty DR, Gregory JF 3rd.

Plant Physiol. 2016 Dec;172(4):2082-2097. Epub 2016 Nov 2. Review.


Arabidopsis TH2 Encodes the Orphan Enzyme Thiamin Monophosphate Phosphatase.

Mimura M, Zallot R, Niehaus TD, Hasnain G, Gidda SK, Nguyen TN, Anderson EM, Mullen RT, Brown G, Yakunin AF, de Crécy-Lagard V, Gregory JF 3rd, McCarty DR, Hanson AD.

Plant Cell. 2016 Oct;28(10):2683-2696. Epub 2016 Sep 27.


Essential role of conserved DUF177A protein in plastid 23S rRNA accumulation and plant embryogenesis.

Yang J, Suzuki M, McCarty DR.

J Exp Bot. 2016 Oct;67(18):5447-5460. Epub 2016 Aug 29.


Embryo defective 14 encodes a plastid-targeted cGTPase essential for embryogenesis in maize.

Li C, Shen Y, Meeley R, McCarty DR, Tan BC.

Plant J. 2015 Nov;84(4):785-99. doi: 10.1111/tpj.13045.


Seed filling in domesticated maize and rice depends on SWEET-mediated hexose transport.

Sosso D, Luo D, Li QB, Sasse J, Yang J, Gendrot G, Suzuki M, Koch KE, McCarty DR, Chourey PS, Rogowsky PM, Ross-Ibarra J, Yang B, Frommer WB.

Nat Genet. 2015 Dec;47(12):1489-93. doi: 10.1038/ng.3422. Epub 2015 Nov 2.


Conserved Functions of the MATE Transporter BIG EMBRYO1 in Regulation of Lateral Organ Size and Initiation Rate.

Suzuki M, Sato Y, Wu S, Kang BH, McCarty DR.

Plant Cell. 2015 Aug;27(8):2288-300. doi: 10.1105/tpc.15.00290. Epub 2015 Aug 14.


The maize DWARF1 encodes a gibberellin 3-oxidase and is dual localized to the nucleus and cytosol.

Chen Y, Hou M, Liu L, Wu S, Shen Y, Ishiyama K, Kobayashi M, McCarty DR, Tan BC.

Plant Physiol. 2014 Dec;166(4):2028-39. doi: 10.1104/pp.114.247486. Epub 2014 Oct 23.


Divisions of labor in the thiamin biosynthetic pathway among organs of maize.

Guan JC, Hasnain G, Garrett TJ, Chase CD, Gregory J, Hanson AD, McCarty DR.

Front Plant Sci. 2014 Aug 4;5:370. doi: 10.3389/fpls.2014.00370. eCollection 2014. Erratum in: Front Plant Sci. 2018 Feb 20;9:148.


Arabidopsis and maize RidA proteins preempt reactive enamine/imine damage to branched-chain amino acid biosynthesis in plastids.

Niehaus TD, Nguyen TN, Gidda SK, ElBadawi-Sidhu M, Lambrecht JA, McCarty DR, Downs DM, Cooper AJ, Fiehn O, Mullen RT, Hanson AD.

Plant Cell. 2014 Jul;26(7):3010-22. doi: 10.1105/tpc.114.126854. Epub 2014 Jul 28.


Salvage of the thiamin pyrimidine moiety by plant TenA proteins lacking an active-site cysteine.

Zallot R, Yazdani M, Goyer A, Ziemak MJ, Guan JC, McCarty DR, de Crécy-Lagard V, Gerdes S, Garrett TJ, Benach J, Hunt JF, Shintani DK, Hanson AD.

Biochem J. 2014 Oct 1;463(1):145-55. doi: 10.1042/BJ20140522.


Regulation of the seed to seedling developmental phase transition by the LAFL and VAL transcription factor networks.

Jia H, Suzuki M, McCarty DR.

Wiley Interdiscip Rev Dev Biol. 2014 Jan-Feb;3(1):135-45. doi: 10.1002/wdev.126. Epub 2013 Aug 23.


Distinct functions of COAR and B3 domains of maize VP1 in induction of ectopic gene expression and plant developmental phenotypes in Arabidopsis.

Suzuki M, Wu S, Li Q, McCarty DR.

Plant Mol Biol. 2014 May;85(1-2):179-91. doi: 10.1007/s11103-014-0177-x. Epub 2014 Jan 29.


Phenotype to genotype using forward-genetic Mu-seq for identification and functional classification of maize mutants.

Hunter CT, Suzuki M, Saunders J, Wu S, Tasi A, McCarty DR, Koch KE.

Front Plant Sci. 2014 Jan 7;4:545. doi: 10.3389/fpls.2013.00545. eCollection 2014 Jan 7.


Mu-seq: sequence-based mapping and identification of transposon induced mutations.

McCarty DR, Latshaw S, Wu S, Suzuki M, Hunter CT, Avigne WT, Koch KE.

PLoS One. 2013 Oct 23;8(10):e77172. doi: 10.1371/journal.pone.0077172. eCollection 2013.


Distinct roles of LAFL network genes in promoting the embryonic seedling fate in the absence of VAL repression.

Jia H, McCarty DR, Suzuki M.

Plant Physiol. 2013 Nov;163(3):1293-305. doi: 10.1104/pp.113.220988. Epub 2013 Sep 16.


Genetic and molecular analyses of UniformMu transposon insertion lines.

McCarty DR, Suzuki M, Hunter C, Collins J, Avigne WT, Koch KE.

Methods Mol Biol. 2013;1057:157-66. doi: 10.1007/978-1-62703-568-2_11.


The potato tuber, maize endosperm and a chimeric maize-potato ADP-glucose pyrophosphorylase exhibit fundamental differences in Pi inhibition.

Boehlein SK, Shaw JR, McCarty DR, Hwang SK, Stewart JD, Hannah LC.

Arch Biochem Biophys. 2013 Sep 15;537(2):210-6. doi: 10.1016/ Epub 2013 Jul 29.


Embryo defective12 encodes the plastid initiation factor 3 and is essential for embryogenesis in maize.

Shen Y, Li C, McCarty DR, Meeley R, Tan BC.

Plant J. 2013 Jun;74(5):792-804. doi: 10.1111/tpj.12161. Epub 2013 Apr 1.


Identification and characterization of the missing pyrimidine reductase in the plant riboflavin biosynthesis pathway.

Hasnain G, Frelin O, Roje S, Ellens KW, Ali K, Guan JC, Garrett TJ, de Crécy-Lagard V, Gregory JF 3rd, McCarty DR, Hanson AD.

Plant Physiol. 2013 Jan;161(1):48-56. doi: 10.1104/pp.112.208488. Epub 2012 Nov 13.


Diverse roles of strigolactone signaling in maize architecture and the uncoupling of a branching-specific subnetwork.

Guan JC, Koch KE, Suzuki M, Wu S, Latshaw S, Petruff T, Goulet C, Klee HJ, McCarty DR.

Plant Physiol. 2012 Nov;160(3):1303-17. doi: 10.1104/pp.112.204503. Epub 2012 Sep 6.


POPcorn: An Online Resource Providing Access to Distributed and Diverse Maize Project Data.

Cannon EK, Birkett SM, Braun BL, Kodavali S, Jennewein DM, Yilmaz A, Antonescu V, Antonescu C, Harper LC, Gardiner JM, Schaeffer ML, Campbell DA, Andorf CM, Andorf D, Lisch D, Koch KE, McCarty DR, Quackenbush J, Grotewold E, Lushbough CM, Sen TZ, Lawrence CJ.

Int J Plant Genomics. 2011;2011:923035. doi: 10.1155/2011/923035. Epub 2011 Dec 27.


Cellulose Synthase-Like D1 is integral to normal cell division, expansion, and leaf development in maize.

Hunter CT, Kirienko DH, Sylvester AW, Peter GF, McCarty DR, Koch KE.

Plant Physiol. 2012 Feb;158(2):708-24. doi: 10.1104/pp.111.188466. Epub 2011 Nov 28.


Structural insights into maize viviparous14, a key enzyme in the biosynthesis of the phytohormone abscisic acid.

Messing SA, Gabelli SB, Echeverria I, Vogel JT, Guan JC, Tan BC, Klee HJ, McCarty DR, Amzel LM.

Plant Cell. 2010 Sep;22(9):2970-80. doi: 10.1105/tpc.110.074815. Epub 2010 Sep 30.


Genetic resources for maize cell wall biology.

Penning BW, Hunter CT 3rd, Tayengwa R, Eveland AL, Dugard CK, Olek AT, Vermerris W, Koch KE, McCarty DR, Davis MF, Thomas SR, McCann MC, Carpita NC.

Plant Physiol. 2009 Dec;151(4):1703-28. doi: 10.1104/pp.109.136804. Epub 2009 Nov 19.


Functional symmetry of the B3 network controlling seed development.

Suzuki M, McCarty DR.

Curr Opin Plant Biol. 2008 Oct;11(5):548-53. doi: 10.1016/j.pbi.2008.06.015. Epub 2008 Aug 6. Review.


The carotenoid cleavage dioxygenase 1 enzyme has broad substrate specificity, cleaving multiple carotenoids at two different bond positions.

Vogel JT, Tan BC, McCarty DR, Klee HJ.

J Biol Chem. 2008 Apr 25;283(17):11364-73. doi: 10.1074/jbc.M710106200. Epub 2008 Feb 19.


The Maize Viviparous8 locus, encoding a putative ALTERED MERISTEM PROGRAM1-like peptidase, regulates abscisic acid accumulation and coordinates embryo and endosperm development.

Suzuki M, Latshaw S, Sato Y, Settles AM, Koch KE, Hannah LC, Kojima M, Sakakibara H, McCarty DR.

Plant Physiol. 2008 Mar;146(3):1193-206. doi: 10.1104/pp.107.114108. Epub 2008 Jan 18.


Transcript profiling by 3'-untranslated region sequencing resolves expression of gene families.

Eveland AL, McCarty DR, Koch KE.

Plant Physiol. 2008 Jan;146(1):32-44. Epub 2007 Nov 16.


Sequence-indexed mutations in maize using the UniformMu transposon-tagging population.

Settles AM, Holding DR, Tan BC, Latshaw SP, Liu J, Suzuki M, Li L, O'Brien BA, Fajardo DS, Wroclawska E, Tseung CW, Lai J, Hunter CT 3rd, Avigne WT, Baier J, Messing J, Hannah LC, Koch KE, Becraft PW, Larkins BA, McCarty DR.

BMC Genomics. 2007 May 9;8:116.


Abscisic acid and stress signals induce Viviparous1 expression in seed and vegetative tissues of maize.

Cao X, Costa LM, Biderre-Petit C, Kbhaya B, Dey N, Perez P, McCarty DR, Gutierrez-Marcos JF, Becraft PW.

Plant Physiol. 2007 Feb;143(2):720-31. Epub 2007 Jan 5.


Plant carotenoid cleavage oxygenases and their apocarotenoid products.

Auldridge ME, McCarty DR, Klee HJ.

Curr Opin Plant Biol. 2006 Jun;9(3):315-21. Epub 2006 Apr 17. Review.


Characterization of three members of the Arabidopsis carotenoid cleavage dioxygenase family demonstrates the divergent roles of this multifunctional enzyme family.

Auldridge ME, Block A, Vogel JT, Dabney-Smith C, Mila I, Bouzayen M, Magallanes-Lundback M, DellaPenna D, McCarty DR, Klee HJ.

Plant J. 2006 Mar;45(6):982-93.


The maize viviparous15 locus encodes the molybdopterin synthase small subunit.

Suzuki M, Settles AM, Tseung CW, Li QB, Latshaw S, Wu S, Porch TG, Schmelz EA, James MG, McCarty DR.

Plant J. 2006 Jan;45(2):264-74.


Steady-state transposon mutagenesis in inbred maize.

McCarty DR, Settles AM, Suzuki M, Tan BC, Latshaw S, Porch T, Robin K, Baier J, Avigne W, Lai J, Messing J, Koch KE, Hannah LC.

Plant J. 2005 Oct;44(1):52-61.


Quantitative statistical analysis of cis-regulatory sequences in ABA/VP1- and CBF/DREB1-regulated genes of Arabidopsis.

Suzuki M, Ketterling MG, McCarty DR.

Plant Physiol. 2005 Sep;139(1):437-47. Epub 2005 Aug 19.


Genomics of plant cell wall biogenesis.

Yong W, Link B, O'Malley R, Tewari J, Hunter CT, Lu CA, Li X, Bleecker AB, Koch KE, McCann MC, McCarty DR, Patterson SE, Reiter WD, Staiger C, Thomas SR, Vermerris W, Carpita NC.

Planta. 2005 Aug;221(6):747-51. Epub 2005 Jun 25. Review. No abstract available.


Molecular analysis of high-copy insertion sites in maize.

Settles AM, Latshaw S, McCarty DR.

Nucleic Acids Res. 2004 Apr 1;32(6):e54.


Viviparous1 alters global gene expression patterns through regulation of abscisic acid signaling.

Suzuki M, Ketterling MG, Li QB, McCarty DR.

Plant Physiol. 2003 Jul;132(3):1664-77.

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