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Unique MLH1 mutations in colonic adenomas in an obligate germline Lynch syndrome carrier.

Serra S, Capo-Chichi JM, McCarthy AJ, Sabatini P, Chetty R.

J Clin Pathol. 2019 Oct 24. pii: jclinpath-2019-206234. doi: 10.1136/jclinpath-2019-206234. [Epub ahead of print]


Next-generation sequencing reveals fecal contamination and potentially pathogenic bacteria in a major inflow river of Taihu Lake.

Vadde KK, Feng Q, Wang J, McCarthy AJ, Sekar R.

Environ Pollut. 2019 Nov;254(Pt B):113108. doi: 10.1016/j.envpol.2019.113108. Epub 2019 Aug 28.


Traditional serrated adenoma: an overview of pathology and emphasis on molecular pathogenesis.

McCarthy AJ, Serra S, Chetty R.

BMJ Open Gastroenterol. 2019 Jul 24;6(1):e000317. doi: 10.1136/bmjgast-2019-000317. eCollection 2019. Review.


Quantification of Microbial Source Tracking and Pathogenic Bacterial Markers in Water and Sediments of Tiaoxi River (Taihu Watershed).

Vadde KK, McCarthy AJ, Rong R, Sekar R.

Front Microbiol. 2019 Apr 24;10:699. doi: 10.3389/fmicb.2019.00699. eCollection 2019.


Urbanization Impacts the Physicochemical Characteristics and Abundance of Fecal Markers and Bacterial Pathogens in Surface Water.

Yuan T, Vadde KK, Tonkin JD, Wang J, Lu J, Zhang Z, Zhang Y, McCarthy AJ, Sekar R.

Int J Environ Res Public Health. 2019 May 16;16(10). pii: E1739. doi: 10.3390/ijerph16101739.


Metastatic low-grade endometrial stromal sarcoma of uterus presenting as a primary pancreatic tumor: case presentation and literature review.

McCarthy AJ, Clarke BA, McGilvray I, Dickson BC, Khalili K, Chetty R.

Diagn Pathol. 2019 Apr 22;14(1):30. doi: 10.1186/s13000-019-0807-3. Review.


Gut-associated lymphoid tissue or so-called "dome" carcinoma of the colon: Review.

McCarthy AJ, Chetty R.

World J Gastrointest Oncol. 2019 Jan 15;11(1):59-70. doi: 10.4251/wjgo.v11.i1.59.


Colorectal Serrated Neoplasia: An Institutional 12-Year Review Highlights the Impact of a Screening Programme.

McCarthy AJ, O'Reilly SM, Shanley J, Geraghty R, Ryan EJ, Cullen G, Sheahan K.

Gastroenterol Res Pract. 2019 Feb 6;2019:1592306. doi: 10.1155/2019/1592306. eCollection 2019.


Loss of Trefoil Factor 2 Sensitizes Rat Pups to Systemic Infection with the Neonatal Pathogen Escherichia coli K1.

McCarthy AJ, Birchenough GMH, Taylor PW.

Infect Immun. 2019 Apr 23;87(5). pii: e00878-18. doi: 10.1128/IAI.00878-18. Print 2019 Mar.


Neoadjuvant therapy in gynaecological malignancies: What pathologists need to know.

McCarthy AJ, Rouzbahman M, Thiryayi SA, Chapman WB, Clarke BA.

J Clin Pathol. 2019 Feb;72(2):102-111. doi: 10.1136/jclinpath-2018-205634. Review.


Neoadjuvant chemoradiation and rectal cancer.

Chetty R, McCarthy AJ.

J Clin Pathol. 2019 Feb;72(2):97-101. doi: 10.1136/jclinpath-2018-205592. Epub 2018 Dec 28. Review.


Molecular basis determining species specificity for TLR2 inhibition by staphylococcal superantigen-like protein 3 (SSL3).

Koymans KJ, Feitsma LJ, Bisschop A, Huizinga EG, van Strijp JAG, de Haas CJC, McCarthy AJ.

Vet Res. 2018 Nov 28;49(1):115. doi: 10.1186/s13567-018-0609-8.


Heterogenous loss of mismatch repair (MMR) protein expression: a challenge for immunohistochemical interpretation and microsatellite instability (MSI) evaluation.

McCarthy AJ, Capo-Chichi JM, Spence T, Grenier S, Stockley T, Kamel-Reid S, Serra S, Sabatini P, Chetty R.

J Pathol Clin Res. 2019 Apr;5(2):115-129. doi: 10.1002/cjp2.120. Epub 2018 Dec 19.


Benign Smooth Muscle Tumors (Leiomyomas) of Deep Somatic Soft Tissue.

McCarthy AJ, Chetty R.

Sarcoma. 2018 Sep 9;2018:2071394. doi: 10.1155/2018/2071394. eCollection 2018. Review.


Viromic Analysis of Wastewater Input to a River Catchment Reveals a Diverse Assemblage of RNA Viruses.

Adriaenssens EM, Farkas K, Harrison C, Jones DL, Allison HE, McCarthy AJ.

mSystems. 2018 May 22;3(3). pii: e00025-18. doi: 10.1128/mSystems.00025-18. eCollection 2018 May-Jun.



McCarthy AJ, Chetty R.

J Clin Pathol. 2018 Aug;71(8):661-664. doi: 10.1136/jclinpath-2018-205095. Epub 2018 May 2. Review.


Neural and neurogenic tumours of the gastroenteropancreaticobiliary tract.

McCarthy AJ, Karamchandani DM, Chetty R.

J Clin Pathol. 2018 Jul;71(7):565-578. doi: 10.1136/jclinpath-2017-204895. Epub 2018 Feb 1. Review.


Tumours composed of fat are no longer a simple diagnosis: an overview of fatty tumours with a spindle cell component.

McCarthy AJ, Chetty R.

J Clin Pathol. 2018 Jun;71(6):483-492. doi: 10.1136/jclinpath-2017-204975. Epub 2018 Jan 22. Review.


Well-Differentiated Liposarcoma (Atypical Lipomatous Tumor) Presenting as an Esophageal Polyp.

McCarthy AJ, Carroll P, Vajpeyi R, Darling G, Chetty R.

J Gastrointest Cancer. 2019 Sep;50(3):589-595. doi: 10.1007/s12029-018-0052-0. No abstract available.


Genome-Wide Identification by Transposon Insertion Sequencing of Escherichia coli K1 Genes Essential for In Vitro Growth, Gastrointestinal Colonizing Capacity, and Survival in Serum.

McCarthy AJ, Stabler RA, Taylor PW.

J Bacteriol. 2018 Mar 12;200(7). pii: e00698-17. doi: 10.1128/JB.00698-17. Print 2018 Apr 1.


Classification of eosinophilic disorders of the small and large intestine.

McCarthy AJ, Sheahan K.

Virchows Arch. 2018 Jan;472(1):15-28. doi: 10.1007/s00428-017-2249-1. Epub 2017 Nov 10.


Regulated intramembrane proteolysis: emergent role in cell signalling pathways.

McCarthy AJ, Coleman-Vaughan C, McCarthy JV.

Biochem Soc Trans. 2017 Dec 15;45(6):1185-1202. doi: 10.1042/BST20170002. Epub 2017 Oct 27. Review.


Immune evasion by a staphylococcal inhibitor of myeloperoxidase.

de Jong NWM, Ramyar KX, Guerra FE, Nijland R, Fevre C, Voyich JM, McCarthy AJ, Garcia BL, van Kessel KPM, van Strijp JAG, Geisbrecht BV, Haas PA.

Proc Natl Acad Sci U S A. 2017 Aug 29;114(35):9439-9444. doi: 10.1073/pnas.1707032114. Epub 2017 Aug 14.


Lignocellulose-Degrading Microbial Communities in Landfill Sites Represent a Repository of Unexplored Biomass-Degrading Diversity.

Ransom-Jones E, McCarthy AJ, Haldenby S, Doonan J, McDonald JE.

mSphere. 2017 Aug 2;2(4). pii: e00300-17. doi: 10.1128/mSphere.00300-17. eCollection 2017 Jul-Aug.


Postnatal development of the small intestinal mucosa drives age-dependent, regio-selective susceptibility to Escherichia coli K1 infection.

Birchenough GM, Dalgakiran F, Witcomb LA, Johansson ME, McCarthy AJ, Hansson GC, Taylor PW.

Sci Rep. 2017 Mar 6;7(1):83. doi: 10.1038/s41598-017-00123-w.


Shigatoxin encoding Bacteriophage ϕ24B modulates bacterial metabolism to raise antimicrobial tolerance.

Holt GS, Lodge JK, McCarthy AJ, Graham AK, Young G, Bridge SH, Brown AK, Veses-Garcia M, Lanyon CV, Sails A, Allison HE, Smith DL.

Sci Rep. 2017 Jan 20;7:40424. doi: 10.1038/srep40424.


Pathoadaptive Mutations of Escherichia coli K1 in Experimental Neonatal Systemic Infection.

McCarthy AJ, Negus D, Martin P, Pechincha C, Oswald E, Stabler RA, Taylor PW.

PLoS One. 2016 Nov 18;11(11):e0166793. doi: 10.1371/journal.pone.0166793. eCollection 2016.


Development and Evaluation of a Molecular Diagnostic Method for Rapid Detection of Histoplasma capsulatum var. farciminosum, the Causative Agent of Epizootic Lymphangitis, in Equine Clinical Samples.

Scantlebury CE, Pinchbeck GL, Loughnane P, Aklilu N, Ashine T, Stringer AP, Gordon L, Marshall M, Christley RM, McCarthy AJ.

J Clin Microbiol. 2016 Dec;54(12):2990-2999. Epub 2016 Oct 5.


The Bacterial Stress-Responsive Hsp90 Chaperone (HtpG) Is Required for the Production of the Genotoxin Colibactin and the Siderophore Yersiniabactin in Escherichia coli.

Garcie C, Tronnet S, Garénaux A, McCarthy AJ, Brachmann AO, Pénary M, Houle S, Nougayrède JP, Piel J, Taylor PW, Dozois CM, Genevaux P, Oswald E, Martin P.

J Infect Dis. 2016 Sep 15;214(6):916-24. doi: 10.1093/infdis/jiw294. Epub 2016 Jul 13.


Characterising the Canine Oral Microbiome by Direct Sequencing of Reverse-Transcribed rRNA Molecules.

McDonald JE, Larsen N, Pennington A, Connolly J, Wallis C, Rooks DJ, Hall N, McCarthy AJ, Allison HE.

PLoS One. 2016 Jun 8;11(6):e0157046. doi: 10.1371/journal.pone.0157046. eCollection 2016.


Rapid genetic restoration of a keystone species exhibiting delayed demographic response.

Cosentino BJ, Schooley RL, Bestelmeyer BT, McCarthy AJ, Sierzega K.

Mol Ecol. 2015 Dec;24(24):6120-33. doi: 10.1111/mec.13469.


Transcriptomic analysis of Shiga-toxigenic bacteriophage carriage reveals a profound regulatory effect on acid resistance in Escherichia coli.

Veses-Garcia M, Liu X, Rigden DJ, Kenny JG, McCarthy AJ, Allison HE.

Appl Environ Microbiol. 2015 Dec;81(23):8118-25. doi: 10.1128/AEM.02034-15. Epub 2015 Sep 18.


Anoxic Biodegradation of Isosaccharinic Acids at Alkaline pH by Natural Microbial Communities.

Rout SP, Charles CJ, Doulgeris C, McCarthy AJ, Rooks DJ, Loughnane JP, Laws AP, Humphreys PN.

PLoS One. 2015 Sep 14;10(9):e0137682. doi: 10.1371/journal.pone.0137682. eCollection 2015.


Bioluminescent imaging reveals novel patterns of colonization and invasion in systemic Escherichia coli K1 experimental infection in the neonatal rat.

Witcomb LA, Collins JW, McCarthy AJ, Frankel G, Taylor PW.

Infect Immun. 2015 Dec;83(12):4528-40. doi: 10.1128/IAI.00953-15. Epub 2015 Sep 8.


The Genotoxin Colibactin Is a Determinant of Virulence in Escherichia coli K1 Experimental Neonatal Systemic Infection.

McCarthy AJ, Martin P, Cloup E, Stabler RA, Oswald E, Taylor PW.

Infect Immun. 2015 Sep;83(9):3704-11. doi: 10.1128/IAI.00716-15. Epub 2015 Jul 6.


Iatrogenic pathology of the intestines.

McCarthy AJ, Lauwers GY, Sheahan K.

Histopathology. 2015 Jan;66(1):15-28. doi: 10.1111/his.12598. Review.


Hickman line fracture in a road traffic accident.

Martin RM, Paterson A, Crone EM, McCarthy AJ.

Pediatr Radiol. 2015 Jul;45(7):1103-4. doi: 10.1007/s00247-014-3254-z. Epub 2015 Jan 24. No abstract available.


Genomic insights into the rapid emergence and evolution of MDR in Staphylococcus pseudintermedius.

McCarthy AJ, Harrison EM, Stanczak-Mrozek K, Leggett B, Waller A, Holmes MA, Lloyd DH, Lindsay JA, Loeffler A.

J Antimicrob Chemother. 2015 Apr;70(4):997-1007. doi: 10.1093/jac/dku496. Epub 2014 Dec 18.


Non-invasive model of neuropathogenic Escherichia coli infection in the neonatal rat.

Dalgakiran F, Witcomb LA, McCarthy AJ, Birchenough GM, Taylor PW.

J Vis Exp. 2014 Oct 29;(92):e52018. doi: 10.3791/52018.


Extensive horizontal gene transfer during Staphylococcus aureus co-colonization in vivo.

McCarthy AJ, Loeffler A, Witney AA, Gould KA, Lloyd DH, Lindsay JA.

Genome Biol Evol. 2014 Sep 25;6(10):2697-708. doi: 10.1093/gbe/evu214.


Bacterio-plankton transformation of diazepam and 2-amino-5-chlorobenzophenone in river waters.

Tappin AD, Loughnane JP, McCarthy AJ, Fitzsimons MF.

Environ Sci Process Impacts. 2014;16(10):2227-36. doi: 10.1039/c4em00306c.


Fructose transport-deficient Staphylococcus aureus reveals important role of epithelial glucose transporters in limiting sugar-driven bacterial growth in airway surface liquid.

Garnett JP, Braun D, McCarthy AJ, Farrant MR, Baker EH, Lindsay JA, Baines DL.

Cell Mol Life Sci. 2014 Dec;71(23):4665-73. doi: 10.1007/s00018-014-1635-y. Epub 2014 May 9.


Staphylococcus aureus innate immune evasion is lineage-specific: a bioinfomatics study.

McCarthy AJ, Lindsay JA.

Infect Genet Evol. 2013 Oct;19:7-14. doi: 10.1016/j.meegid.2013.06.012. Epub 2013 Jun 19.


Shuffling of mobile genetic elements (MGEs) in successful healthcare-associated MRSA (HA-MRSA).

Lindsay JA, Knight GM, Budd EL, McCarthy AJ.

Mob Genet Elements. 2012 Sep 1;2(5):239-243.


Antimicrobial resistance in some gram-negative bacteria isolated from the bovine ejaculate.

Kilburn C, Rooks DJ, McCarthy AJ, Murray RD.

Reprod Domest Anim. 2013 Jun;48(3):525-8. doi: 10.1111/rda.12127. Epub 2013 Jan 18.


Comparative host specificity of human- and pig- associated Staphylococcus aureus clonal lineages.

Moodley A, Espinosa-Gongora C, Nielsen SS, McCarthy AJ, Lindsay JA, Guardabassi L.

PLoS One. 2012;7(11):e49344. doi: 10.1371/journal.pone.0049344. Epub 2012 Nov 14.


Survival of Staphylococcus aureus ST398 in the human nose after artificial inoculation.

Slingerland BC, Tavakol M, McCarthy AJ, Lindsay JA, Snijders SV, Wagenaar JA, van Belkum A, Vos MC, Verbrugh HA, van Wamel WJ.

PLoS One. 2012;7(11):e48896. doi: 10.1371/journal.pone.0048896. Epub 2012 Nov 14.


Staphylococcus aureus CC398 clade associated with human-to-human transmission.

McCarthy AJ, van Wamel W, Vandendriessche S, Larsen J, Denis O, Garcia-Graells C, Uhlemann AC, Lowy FD, Skov R, Lindsay JA.

Appl Environ Microbiol. 2012 Dec;78(24):8845-8. doi: 10.1128/AEM.02398-12. Epub 2012 Oct 5.


Short communication: Characterization of Shiga toxin 2-carrying bacteriophages induced from Shiga-toxigenic Escherichia coli isolated from Italian dairy products.

Volponi G, Rooks DJ, Smith DL, Picozzi C, Allison HE, Vigentini I, Foschino R, McCarthy AJ.

J Dairy Sci. 2012 Dec;95(12):6949-56. doi: 10.3168/jds.2012-5831. Epub 2012 Sep 19.


Development and application of a method for the purification of free shigatoxigenic bacteriophage from environmental samples.

Rooks DJ, Libberton B, Woodward MJ, Allison HE, McCarthy AJ.

J Microbiol Methods. 2012 Nov;91(2):240-5. doi: 10.1016/j.mimet.2012.08.017. Epub 2012 Sep 4.


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