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Items: 18

1.

Long-term evolution on complex fitness landscapes when mutation is weak.

McCandlish DM.

Heredity (Edinb). 2018 Nov;121(5):449-465. doi: 10.1038/s41437-018-0142-6. Epub 2018 Sep 19.

PMID:
30232363
2.

Selection for Protein Stability Enriches for Epistatic Interactions.

Posfai A, Zhou J, Plotkin JB, Kinney JB, McCandlish DM.

Genes (Basel). 2018 Aug 21;9(9). pii: E423. doi: 10.3390/genes9090423.

3.

Inferring the shape of global epistasis.

Otwinowski J, McCandlish DM, Plotkin JB.

Proc Natl Acad Sci U S A. 2018 Aug 7;115(32):E7550-E7558. doi: 10.1073/pnas.1804015115. Epub 2018 Jul 23.

PMID:
30037990
4.

Mutational Biases Influence Parallel Adaptation.

Stoltzfus A, McCandlish DM.

Mol Biol Evol. 2017 Sep 1;34(9):2163-2172. doi: 10.1093/molbev/msx180.

5.

The genealogical decomposition of a matrix population model with applications to the aggregation of stages.

Bienvenu F, Ak├žay E, Legendre S, McCandlish DM.

Theor Popul Biol. 2017 Jun;115:69-80. doi: 10.1016/j.tpb.2017.04.002. Epub 2017 May 2.

PMID:
28476403
6.

Assortative mating can impede or facilitate fixation of underdominant alleles.

Newberry MG, McCandlish DM, Plotkin JB.

Theor Popul Biol. 2016 Dec;112:14-21. doi: 10.1016/j.tpb.2016.07.003. Epub 2016 Aug 3.

7.

Epistasis and the Dynamics of Reversion in Molecular Evolution.

McCandlish DM, Shah P, Plotkin JB.

Genetics. 2016 Jul;203(3):1335-51. doi: 10.1534/genetics.116.188961. Epub 2016 May 18.

8.

Transcriptional errors and the drift barrier.

McCandlish DM, Plotkin JB.

Proc Natl Acad Sci U S A. 2016 Mar 22;113(12):3136-8. doi: 10.1073/pnas.1601785113. Epub 2016 Mar 10. No abstract available.

9.

Mutation-biased adaptation in Andean house wrens.

Stoltzfus A, McCandlish DM.

Proc Natl Acad Sci U S A. 2015 Nov 10;112(45):13753-4. doi: 10.1073/pnas.1518490112. Epub 2015 Oct 21. No abstract available.

10.

Detecting epistasis from an ensemble of adapting populations.

McCandlish DM, Otwinowski J, Plotkin JB.

Evolution. 2015 Sep;69(9):2359-70. doi: 10.1111/evo.12735. Epub 2015 Aug 20.

11.

Contingency and entrenchment in protein evolution under purifying selection.

Shah P, McCandlish DM, Plotkin JB.

Proc Natl Acad Sci U S A. 2015 Jun 23;112(25):E3226-35. doi: 10.1073/pnas.1412933112. Epub 2015 Jun 8.

12.

Formal properties of the probability of fixation: identities, inequalities and approximations.

McCandlish DM, Epstein CL, Plotkin JB.

Theor Popul Biol. 2015 Feb;99:98-113. doi: 10.1016/j.tpb.2014.11.004. Epub 2014 Nov 20.

PMID:
25450112
13.

Modeling evolution using the probability of fixation: history and implications.

McCandlish DM, Stoltzfus A.

Q Rev Biol. 2014 Sep;89(3):225-52. Review.

PMID:
25195318
14.

The inevitability of unconditionally deleterious substitutions during adaptation.

McCandlish DM, Epstein CL, Plotkin JB.

Evolution. 2014 May;68(5):1351-64. doi: 10.1111/evo.12350. Epub 2014 Mar 4.

PMID:
24410330
15.

On the findability of genotypes.

McCandlish DM.

Evolution. 2013 Sep;67(9):2592-603. doi: 10.1111/evo.12128. Epub 2013 May 3.

PMID:
24033169
16.

The role of epistasis in protein evolution.

McCandlish DM, Rajon E, Shah P, Ding Y, Plotkin JB.

Nature. 2013 May 30;497(7451):E1-2; discussion E2-3. doi: 10.1038/nature12219. No abstract available.

PMID:
23719465
17.

Visualizing fitness landscapes.

McCandlish DM.

Evolution. 2011 Jun;65(6):1544-58. doi: 10.1111/j.1558-5646.2011.01236.x. Epub 2011 Mar 1.

18.

A novel roll-and-slide mechanism of DNA folding in chromatin: implications for nucleosome positioning.

Tolstorukov MY, Colasanti AV, McCandlish DM, Olson WK, Zhurkin VB.

J Mol Biol. 2007 Aug 17;371(3):725-38. Epub 2007 May 24.

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