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Items: 47

1.

Cardioprotection by the mitochondrial unfolded protein response requires ATF5.

Wang YT, Lim Y, McCall MN, Huang KT, Haynes CM, Nehrke K, Brookes PS.

Am J Physiol Heart Circ Physiol. 2019 Aug 1;317(2):H472-H478. doi: 10.1152/ajpheart.00244.2019. Epub 2019 Jul 5.

PMID:
31274354
2.

Aims, Study Design, and Enrollment Results From the Assessing Predictors of Infant Respiratory Syncytial Virus Effects and Severity Study.

Walsh EE, Mariani TJ, Chu C, Grier A, Gill SR, Qiu X, Wang L, Holden-Wiltse J, Corbett A, Thakar J, Benoodt L, McCall MN, Topham DJ, Falsey AR, Caserta MT.

JMIR Res Protoc. 2019 Jun 6;8(6):e12907. doi: 10.2196/12907.

3.

Identification of the novel Ido1 imprinted locus and its potential epigenetic role in pregnancy loss.

Spinelli P, Latchney SE, Reed JM, Fields A, Baier BS, Lu X, McCall MN, Murphy SP, Mak W, Susiarjo M.

Hum Mol Genet. 2019 Feb 15;28(4):662-674. doi: 10.1093/hmg/ddy383.

PMID:
30403776
4.

Systematic exploration of cell morphological phenotypes associated with a transcriptomic query.

Nassiri I, McCall MN.

Nucleic Acids Res. 2018 Nov 2;46(19):e116. doi: 10.1093/nar/gky626.

5.

xMD-miRNA-seq to generate near in vivo miRNA expression estimates in colon epithelial cells.

Rosenberg AZ, Wright C, Fox-Talbot K, Rajpurohit A, Williams C, Porter C, Kovbasnjuk O, McCall MN, Shin JH, Halushka MK.

Sci Rep. 2018 Jun 28;8(1):9783. doi: 10.1038/s41598-018-28198-z.

6.

Kras and Tp53 Mutations Cause Cholangiocyte- and Hepatocyte-Derived Cholangiocarcinoma.

Hill MA, Alexander WB, Guo B, Kato Y, Patra K, O'Dell MR, McCall MN, Whitney-Miller CL, Bardeesy N, Hezel AF.

Cancer Res. 2018 Aug 15;78(16):4445-4451. doi: 10.1158/0008-5472.CAN-17-1123. Epub 2018 Jun 5.

7.

Big Strides in Cellular MicroRNA Expression.

Halushka MK, Fromm B, Peterson KJ, McCall MN.

Trends Genet. 2018 Mar;34(3):165-167. doi: 10.1016/j.tig.2017.12.015. Epub 2018 Jan 18. Review.

8.

Toward the human cellular microRNAome.

McCall MN, Kim MS, Adil M, Patil AH, Lu Y, Mitchell CJ, Leal-Rojas P, Xu J, Kumar M, Dawson VL, Dawson TM, Baras AS, Rosenberg AZ, Arking DE, Burns KH, Pandey A, Halushka MK.

Genome Res. 2017 Oct;27(10):1769-1781. doi: 10.1101/gr.222067.117. Epub 2017 Sep 6.

9.

Optical Coherence Tomography Predictors of Risk for Progression to Non-Neovascular Atrophic Age-Related Macular Degeneration.

Sleiman K, Veerappan M, Winter KP, McCall MN, Yiu G, Farsiu S, Chew EY, Clemons T, Toth CA; Age-Related Eye Disease Study 2 Ancillary Spectral Domain Optical Coherence Tomography Study Group.

Ophthalmology. 2017 Dec;124(12):1764-1777. doi: 10.1016/j.ophtha.2017.06.032. Epub 2017 Aug 26.

10.

Complex Sources of Variation in Tissue Expression Data: Analysis of the GTEx Lung Transcriptome.

McCall MN, Illei PB, Halushka MK.

Am J Hum Genet. 2016 Sep 1;99(3):624-635. doi: 10.1016/j.ajhg.2016.07.007.

11.

A microRNA biomarker of hepatocellular carcinoma recurrence following liver transplantation accounting for within-patient heterogeneity.

Xie QY, Almudevar A, Whitney-Miller CL, Barry CT, McCall MN.

BMC Med Genomics. 2016 Apr 8;9:18. doi: 10.1186/s12920-016-0179-4.

12.

A benchmark for microRNA quantification algorithms using the OpenArray platform.

McCall MN, Baras AS, Crits-Christoph A, Ingersoll R, McAlexander MA, Witwer KW, Halushka MK.

BMC Bioinformatics. 2016 Mar 22;17:138. doi: 10.1186/s12859-016-0987-8.

13.

Efficacy of an Fc-modified anti-CD123 antibody (CSL362) combined with chemotherapy in xenograft models of acute myelogenous leukemia in immunodeficient mice.

Lee EM, Yee D, Busfield SJ, McManus JF, Cummings N, Vairo G, Wei A, Ramshaw HS, Powell JA, Lopez AF, Lewis ID, McCall MN, Lock RB.

Haematologica. 2015 Jul;100(7):914-26. doi: 10.3324/haematol.2014.113092.

14.

Lessons from miR-143/145: the importance of cell-type localization of miRNAs.

Kent OA, McCall MN, Cornish TC, Halushka MK.

Nucleic Acids Res. 2014 Jul;42(12):7528-38. doi: 10.1093/nar/gku461. Epub 2014 May 29. Review.

15.

On non-detects in qPCR data.

McCall MN, McMurray HR, Land H, Almudevar A.

Bioinformatics. 2014 Aug 15;30(16):2310-6. doi: 10.1093/bioinformatics/btu239. Epub 2014 Apr 23.

16.

A critical evaluation of microRNA biomarkers in non-neoplastic disease.

Haider BA, Baras AS, McCall MN, Hertel JA, Cornish TC, Halushka MK.

PLoS One. 2014 Feb 26;9(2):e89565. doi: 10.1371/journal.pone.0089565. eCollection 2014.

17.

On the underlying assumptions of threshold Boolean networks as a model for genetic regulatory network behavior.

Tran V, McCall MN, McMurray HR, Almudevar A.

Front Genet. 2013 Dec 11;4:263. doi: 10.3389/fgene.2013.00263. eCollection 2013.

18.

The Gene Expression Barcode 3.0: improved data processing and mining tools.

McCall MN, Jaffee HA, Zelisko SJ, Sinha N, Hooiveld G, Irizarry RA, Zilliox MJ.

Nucleic Acids Res. 2014 Jan;42(Database issue):D938-43. doi: 10.1093/nar/gkt1204. Epub 2013 Nov 22.

19.

ChIP-PED enhances the analysis of ChIP-seq and ChIP-chip data.

Wu G, Yustein JT, McCall MN, Zilliox M, Irizarry RA, Zeller K, Dang CV, Ji H.

Bioinformatics. 2013 May 1;29(9):1182-9. doi: 10.1093/bioinformatics/btt108. Epub 2013 Mar 1.

20.

Estimation of Gene Regulatory Networks.

McCall MN.

Postdoc J. 2013 Jan;1(1):60-69.

21.

fRMA ST: frozen robust multiarray analysis for Affymetrix Exon and Gene ST arrays.

McCall MN, Jaffee HA, Irizarry RA.

Bioinformatics. 2012 Dec 1;28(23):3153-4. doi: 10.1093/bioinformatics/bts588. Epub 2012 Oct 7.

22.

Spectral-domain optical coherence tomography characteristics of intermediate age-related macular degeneration.

Leuschen JN, Schuman SG, Winter KP, McCall MN, Wong WT, Chew EY, Hwang T, Srivastava S, Sarin N, Clemons T, Harrington M, Toth CA.

Ophthalmology. 2013 Jan;120(1):140-50. doi: 10.1016/j.ophtha.2012.07.004. Epub 2012 Sep 8.

23.

Affymetrix GeneChip microarray preprocessing for multivariate analyses.

McCall MN, Almudevar A.

Brief Bioinform. 2012 Sep;13(5):536-46. doi: 10.1093/bib/bbr072. Epub 2011 Dec 30.

24.

MicroRNA profiling of diverse endothelial cell types.

McCall MN, Kent OA, Yu J, Fox-Talbot K, Zaiman AL, Halushka MK.

BMC Med Genomics. 2011 Nov 2;4:78. doi: 10.1186/1755-8794-4-78.

25.

Thawing Frozen Robust Multi-array Analysis (fRMA).

McCall MN, Irizarry RA.

BMC Bioinformatics. 2011 Sep 16;12:369. doi: 10.1186/1471-2105-12-369.

26.

Assessing affymetrix GeneChip microarray quality.

McCall MN, Murakami PN, Lukk M, Huber W, Irizarry RA.

BMC Bioinformatics. 2011 May 7;12:137. doi: 10.1186/1471-2105-12-137.

27.

The Gene Expression Barcode: leveraging public data repositories to begin cataloging the human and murine transcriptomes.

McCall MN, Uppal K, Jaffee HA, Zilliox MJ, Irizarry RA.

Nucleic Acids Res. 2011 Jan;39(Database issue):D1011-5. doi: 10.1093/nar/gkq1259.

28.

Fitting Boolean networks from steady state perturbation data.

Almudevar A, McCall MN, McMurray H, Land H.

Stat Appl Genet Mol Biol. 2011 Oct 5;10(1). pii: /j/sagmb.2011.10.issue-1/1544-6115.1727/1544-6115.1727.xml. doi: 10.2202/1544-6115.1727.

29.

The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models.

Shi L, Campbell G, Jones WD, Campagne F, Wen Z, Walker SJ, Su Z, Chu TM, Goodsaid FM, Pusztai L, Shaughnessy JD Jr, Oberthuer A, Thomas RS, Paules RS, Fielden M, Barlogie B, Chen W, Du P, Fischer M, Furlanello C, Gallas BD, Ge X, Megherbi DB, Symmans WF, Wang MD, Zhang J, Bitter H, Brors B, Bushel PR, Bylesjo M, Chen M, Cheng J, Cheng J, Chou J, Davison TS, Delorenzi M, Deng Y, Devanarayan V, Dix DJ, Dopazo J, Dorff KC, Elloumi F, Fan J, Fan S, Fan X, Fang H, Gonzaludo N, Hess KR, Hong H, Huan J, Irizarry RA, Judson R, Juraeva D, Lababidi S, Lambert CG, Li L, Li Y, Li Z, Lin SM, Liu G, Lobenhofer EK, Luo J, Luo W, McCall MN, Nikolsky Y, Pennello GA, Perkins RG, Philip R, Popovici V, Price ND, Qian F, Scherer A, Shi T, Shi W, Sung J, Thierry-Mieg D, Thierry-Mieg J, Thodima V, Trygg J, Vishnuvajjala L, Wang SJ, Wu J, Wu Y, Xie Q, Yousef WA, Zhang L, Zhang X, Zhong S, Zhou Y, Zhu S, Arasappan D, Bao W, Lucas AB, Berthold F, Brennan RJ, Buness A, Catalano JG, Chang C, Chen R, Cheng Y, Cui J, Czika W, Demichelis F, Deng X, Dosymbekov D, Eils R, Feng Y, Fostel J, Fulmer-Smentek S, Fuscoe JC, Gatto L, Ge W, Goldstein DR, Guo L, Halbert DN, Han J, Harris SC, Hatzis C, Herman D, Huang J, Jensen RV, Jiang R, Johnson CD, Jurman G, Kahlert Y, Khuder SA, Kohl M, Li J, Li L, Li M, Li QZ, Li S, Li Z, Liu J, Liu Y, Liu Z, Meng L, Madera M, Martinez-Murillo F, Medina I, Meehan J, Miclaus K, Moffitt RA, Montaner D, Mukherjee P, Mulligan GJ, Neville P, Nikolskaya T, Ning B, Page GP, Parker J, Parry RM, Peng X, Peterson RL, Phan JH, Quanz B, Ren Y, Riccadonna S, Roter AH, Samuelson FW, Schumacher MM, Shambaugh JD, Shi Q, Shippy R, Si S, Smalter A, Sotiriou C, Soukup M, Staedtler F, Steiner G, Stokes TH, Sun Q, Tan PY, Tang R, Tezak Z, Thorn B, Tsyganova M, Turpaz Y, Vega SC, Visintainer R, von Frese J, Wang C, Wang E, Wang J, Wang W, Westermann F, Willey JC, Woods M, Wu S, Xiao N, Xu J, Xu L, Yang L, Zeng X, Zhang J, Zhang L, Zhang M, Zhao C, Puri RK, Scherf U, Tong W, Wolfinger RD; MAQC Consortium.

Nat Biotechnol. 2010 Aug;28(8):827-38. doi: 10.1038/nbt.1665. Epub 2010 Jul 30.

30.

Performance evaluation of commercial miRNA expression array platforms.

Sah S, McCall MN, Eveleigh D, Wilson M, Irizarry RA.

BMC Res Notes. 2010 Mar 18;3:80. doi: 10.1186/1756-0500-3-80.

31.

Frozen robust multiarray analysis (fRMA).

McCall MN, Bolstad BM, Irizarry RA.

Biostatistics. 2010 Apr;11(2):242-53. doi: 10.1093/biostatistics/kxp059. Epub 2010 Jan 22.

32.

Consolidated strategy for the analysis of microarray spike-in data.

McCall MN, Irizarry RA.

Nucleic Acids Res. 2008 Oct;36(17):e108. doi: 10.1093/nar/gkn430. Epub 2008 Aug 1.

33.

Accelerated cell line development using two-color fluorescence activated cell sorting to select highly expressing antibody-producing clones.

Sleiman RJ, Gray PP, McCall MN, Codamo J, Sunstrom NA.

Biotechnol Bioeng. 2008 Feb 15;99(3):578-87.

PMID:
17680677
34.

Antisense-mediated Inhibition of the plasma membrane calcium-ATPase suppresses proliferation of MCF-7 cells.

Lee WJ, Robinson JA, Holman NA, McCall MN, Roberts-Thomson SJ, Monteith GR.

J Biol Chem. 2005 Jul 22;280(29):27076-84. Epub 2005 May 23.

35.

Dexamethasone inhibits the binding of nuclear factors to the IL-5 promoter in human CD4 T cells.

Quan A, McCall MN, Sewell WA.

J Allergy Clin Immunol. 2001 Sep;108(3):340-8.

PMID:
11544451
36.

In-vivo response to free electron laser incision of the rabbit cornea.

Toth CA, Chiu EK, Winter KP, McCall MN, Bailey SF, Harkrider CJ, Hauger S.

Lasers Surg Med. 2001;29(1):44-52.

PMID:
11500862
37.

Switch recombination and germ-line transcription are division-regulated events in B lymphocytes.

McCall MN, Hodgkin PD.

Biochim Biophys Acta. 1999 Oct 6;1447(1):43-50.

PMID:
10500242
38.

Repressible antisense inhibition in B lymphocytes.

McCall MN.

Biochim Biophys Acta. 1998 Apr 1;1397(1):65-72.

PMID:
9545537
39.

Evaluation of antisense inhibition in a B cell model.

McCall MN, Kuchel MG, Basten A.

Biochem Mol Biol Int. 1997 Jun;42(1):45-56.

PMID:
9192084
40.

Functional heterogeneity of human term cytotrophoblasts revealed by differential sensitivity to extracellular Ca2+ and nucleotides.

Bradbury RA, McCall MN, Brown MJ, Conigrave AD.

J Endocrinol. 1996 Apr;149(1):135-44.

PMID:
8676046
42.

CD45; from alloantigen to mapping of restricted epitopes using recombinant soluble CD45 isoforms.

Barclay AN, McCall MN.

Biochem Soc Trans. 1992 Feb;20(1):161-4. Review. No abstract available.

PMID:
1378795
43.

Identification of methyl resonances in the 1H NMR spectrum of incubated blood cell lysates.

Mendz GL, McCall MN, Kuchel PW.

J Biol Chem. 1989 Feb 5;264(4):2100-7.

44.
45.
46.
47.

The presence of histidine residues at or near the C1q binding site of rabbit immunoglobulin G.

McCall MN, Easterbrook-Smith SB.

Biochim Biophys Acta. 1987 Mar 18;912(1):9-15.

PMID:
3493808

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