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Items: 50

1.

Talar process fractures: An overview and update of the literature.

Majeed H, McBride DJ.

EFORT Open Rev. 2018 Mar 29;3(3):85-92. doi: 10.1302/2058-5241.3.170040. eCollection 2018 Mar.

2.

Multiple intratendinous ossified deposits of the Achilles tendon: Case report of an unusual pattern of ossification.

Majeed H, Deall C, Mann A, McBride DJ.

Foot Ankle Surg. 2015 Jun;21(2):e33-5. doi: 10.1016/j.fas.2014.12.001. Epub 2015 Jan 19.

PMID:
25937419
3.

Whole exome sequencing of adenoid cystic carcinoma.

Stephens PJ, Davies HR, Mitani Y, Van Loo P, Shlien A, Tarpey PS, Papaemmanuil E, Cheverton A, Bignell GR, Butler AP, Gamble J, Gamble S, Hardy C, Hinton J, Jia M, Jayakumar A, Jones D, Latimer C, McLaren S, McBride DJ, Menzies A, Mudie L, Maddison M, Raine K, Nik-Zainal S, O'Meara S, Teague JW, Varela I, Wedge DC, Whitmore I, Lippman SM, McDermott U, Stratton MR, Campbell PJ, El-Naggar AK, Futreal PA.

J Clin Invest. 2013 Jul;123(7):2965-8. doi: 10.1172/JCI67201. Epub 2013 Jun 17.

4.

Single-cell paired-end genome sequencing reveals structural variation per cell cycle.

Voet T, Kumar P, Van Loo P, Cooke SL, Marshall J, Lin ML, Zamani Esteki M, Van der Aa N, Mateiu L, McBride DJ, Bignell GR, McLaren S, Teague J, Butler A, Raine K, Stebbings LA, Quail MA, D'Hooghe T, Moreau Y, Futreal PA, Stratton MR, Vermeesch JR, Campbell PJ.

Nucleic Acids Res. 2013 Jul;41(12):6119-38. doi: 10.1093/nar/gkt345. Epub 2013 Apr 29.

5.

The landscape of cancer genes and mutational processes in breast cancer.

Stephens PJ, Tarpey PS, Davies H, Van Loo P, Greenman C, Wedge DC, Nik-Zainal S, Martin S, Varela I, Bignell GR, Yates LR, Papaemmanuil E, Beare D, Butler A, Cheverton A, Gamble J, Hinton J, Jia M, Jayakumar A, Jones D, Latimer C, Lau KW, McLaren S, McBride DJ, Menzies A, Mudie L, Raine K, Rad R, Chapman MS, Teague J, Easton D, Langerød A; Oslo Breast Cancer Consortium (OSBREAC), Lee MT, Shen CY, Tee BT, Huimin BW, Broeks A, Vargas AC, Turashvili G, Martens J, Fatima A, Miron P, Chin SF, Thomas G, Boyault S, Mariani O, Lakhani SR, van de Vijver M, van 't Veer L, Foekens J, Desmedt C, Sotiriou C, Tutt A, Caldas C, Reis-Filho JS, Aparicio SA, Salomon AV, Børresen-Dale AL, Richardson AL, Campbell PJ, Futreal PA, Stratton MR.

Nature. 2012 May 16;486(7403):400-4. doi: 10.1038/nature11017.

6.

A validated tumorgraft model reveals activity of dovitinib against renal cell carcinoma.

Sivanand S, Peña-Llopis S, Zhao H, Kucejova B, Spence P, Pavia-Jimenez A, Yamasaki T, McBride DJ, Gillen J, Wolff NC, Morlock L, Lotan Y, Raj GV, Sagalowsky A, Margulis V, Cadeddu JA, Ross MT, Bentley DR, Kabbani W, Xie XJ, Kapur P, Williams NS, Brugarolas J.

Sci Transl Med. 2012 Jun 6;4(137):137ra75. doi: 10.1126/scitranslmed.3003643.

7.

Mutational processes molding the genomes of 21 breast cancers.

Nik-Zainal S, Alexandrov LB, Wedge DC, Van Loo P, Greenman CD, Raine K, Jones D, Hinton J, Marshall J, Stebbings LA, Menzies A, Martin S, Leung K, Chen L, Leroy C, Ramakrishna M, Rance R, Lau KW, Mudie LJ, Varela I, McBride DJ, Bignell GR, Cooke SL, Shlien A, Gamble J, Whitmore I, Maddison M, Tarpey PS, Davies HR, Papaemmanuil E, Stephens PJ, McLaren S, Butler AP, Teague JW, Jönsson G, Garber JE, Silver D, Miron P, Fatima A, Boyault S, Langerød A, Tutt A, Martens JW, Aparicio SA, Borg Å, Salomon AV, Thomas G, Børresen-Dale AL, Richardson AL, Neuberger MS, Futreal PA, Campbell PJ, Stratton MR; Breast Cancer Working Group of the International Cancer Genome Consortium.

Cell. 2012 May 25;149(5):979-93. doi: 10.1016/j.cell.2012.04.024. Epub 2012 May 17.

8.

The life history of 21 breast cancers.

Nik-Zainal S, Van Loo P, Wedge DC, Alexandrov LB, Greenman CD, Lau KW, Raine K, Jones D, Marshall J, Ramakrishna M, Shlien A, Cooke SL, Hinton J, Menzies A, Stebbings LA, Leroy C, Jia M, Rance R, Mudie LJ, Gamble SJ, Stephens PJ, McLaren S, Tarpey PS, Papaemmanuil E, Davies HR, Varela I, McBride DJ, Bignell GR, Leung K, Butler AP, Teague JW, Martin S, Jönsson G, Mariani O, Boyault S, Miron P, Fatima A, Langerød A, Aparicio SA, Tutt A, Sieuwerts AM, Borg Å, Thomas G, Salomon AV, Richardson AL, Børresen-Dale AL, Futreal PA, Stratton MR, Campbell PJ; Breast Cancer Working Group of the International Cancer Genome Consortium.

Cell. 2012 May 25;149(5):994-1007. doi: 10.1016/j.cell.2012.04.023. Epub 2012 May 17. Erratum in: Cell. 2015 Aug 13;162(4):924.

9.

Tandem duplication of chromosomal segments is common in ovarian and breast cancer genomes.

McBride DJ, Etemadmoghadam D, Cooke SL, Alsop K, George J, Butler A, Cho J, Galappaththige D, Greenman C, Howarth KD, Lau KW, Ng CK, Raine K, Teague J, Wedge DC, Cancer Study Group AO, Caubit X, Stratton MR, Brenton JD, Campbell PJ, Futreal PA, Bowtell DD.

J Pathol. 2012 Aug;227(4):446-55. doi: 10.1002/path.4042. Epub 2012 Jul 2.

10.

Genome sequencing and analysis of the Tasmanian devil and its transmissible cancer.

Murchison EP, Schulz-Trieglaff OB, Ning Z, Alexandrov LB, Bauer MJ, Fu B, Hims M, Ding Z, Ivakhno S, Stewart C, Ng BL, Wong W, Aken B, White S, Alsop A, Becq J, Bignell GR, Cheetham RK, Cheng W, Connor TR, Cox AJ, Feng ZP, Gu Y, Grocock RJ, Harris SR, Khrebtukova I, Kingsbury Z, Kowarsky M, Kreiss A, Luo S, Marshall J, McBride DJ, Murray L, Pearse AM, Raine K, Rasolonjatovo I, Shaw R, Tedder P, Tregidgo C, Vilella AJ, Wedge DC, Woods GM, Gormley N, Humphray S, Schroth G, Smith G, Hall K, Searle SM, Carter NP, Papenfuss AT, Futreal PA, Campbell PJ, Yang F, Bentley DR, Evers DJ, Stratton MR.

Cell. 2012 Feb 17;148(4):780-91. doi: 10.1016/j.cell.2011.11.065.

11.

DNaseI hypersensitivity and ultraconservation reveal novel, interdependent long-range enhancers at the complex Pax6 cis-regulatory region.

McBride DJ, Buckle A, van Heyningen V, Kleinjan DA.

PLoS One. 2011;6(12):e28616. doi: 10.1371/journal.pone.0028616. Epub 2011 Dec 29.

12.

Massive genomic rearrangement acquired in a single catastrophic event during cancer development.

Stephens PJ, Greenman CD, Fu B, Yang F, Bignell GR, Mudie LJ, Pleasance ED, Lau KW, Beare D, Stebbings LA, McLaren S, Lin ML, McBride DJ, Varela I, Nik-Zainal S, Leroy C, Jia M, Menzies A, Butler AP, Teague JW, Quail MA, Burton J, Swerdlow H, Carter NP, Morsberger LA, Iacobuzio-Donahue C, Follows GA, Green AR, Flanagan AM, Stratton MR, Futreal PA, Campbell PJ.

Cell. 2011 Jan 7;144(1):27-40. doi: 10.1016/j.cell.2010.11.055.

13.

The patterns and dynamics of genomic instability in metastatic pancreatic cancer.

Campbell PJ, Yachida S, Mudie LJ, Stephens PJ, Pleasance ED, Stebbings LA, Morsberger LA, Latimer C, McLaren S, Lin ML, McBride DJ, Varela I, Nik-Zainal SA, Leroy C, Jia M, Menzies A, Butler AP, Teague JW, Griffin CA, Burton J, Swerdlow H, Quail MA, Stratton MR, Iacobuzio-Donahue C, Futreal PA.

Nature. 2010 Oct 28;467(7319):1109-13. doi: 10.1038/nature09460.

14.

Use of cancer-specific genomic rearrangements to quantify disease burden in plasma from patients with solid tumors.

McBride DJ, Orpana AK, Sotiriou C, Joensuu H, Stephens PJ, Mudie LJ, Hämäläinen E, Stebbings LA, Andersson LC, Flanagan AM, Durbecq V, Ignatiadis M, Kallioniemi O, Heckman CA, Alitalo K, Edgren H, Futreal PA, Stratton MR, Campbell PJ.

Genes Chromosomes Cancer. 2010 Nov;49(11):1062-9. doi: 10.1002/gcc.20815.

15.

A common variant in fibroblast growth factor binding protein 1 (FGFBP1) is associated with bone mineral density and influences gene expression in vitro.

Hoppman N, McLenithan JC, McBride DJ, Shen H, Bruder J, Bauer RL, Shaffer JR, Liu J, Streeten EA, Shuldiner AR, Kammerer CM, Mitchell BD.

Bone. 2010 Aug;47(2):272-80. doi: 10.1016/j.bone.2010.04.607. Epub 2010 May 5.

16.

Systematic sequencing of renal carcinoma reveals inactivation of histone modifying genes.

Dalgliesh GL, Furge K, Greenman C, Chen L, Bignell G, Butler A, Davies H, Edkins S, Hardy C, Latimer C, Teague J, Andrews J, Barthorpe S, Beare D, Buck G, Campbell PJ, Forbes S, Jia M, Jones D, Knott H, Kok CY, Lau KW, Leroy C, Lin ML, McBride DJ, Maddison M, Maguire S, McLay K, Menzies A, Mironenko T, Mulderrig L, Mudie L, O'Meara S, Pleasance E, Rajasingham A, Shepherd R, Smith R, Stebbings L, Stephens P, Tang G, Tarpey PS, Turrell K, Dykema KJ, Khoo SK, Petillo D, Wondergem B, Anema J, Kahnoski RJ, Teh BT, Stratton MR, Futreal PA.

Nature. 2010 Jan 21;463(7279):360-3. doi: 10.1038/nature08672. Epub 2010 Jan 6.

17.

Complex landscapes of somatic rearrangement in human breast cancer genomes.

Stephens PJ, McBride DJ, Lin ML, Varela I, Pleasance ED, Simpson JT, Stebbings LA, Leroy C, Edkins S, Mudie LJ, Greenman CD, Jia M, Latimer C, Teague JW, Lau KW, Burton J, Quail MA, Swerdlow H, Churcher C, Natrajan R, Sieuwerts AM, Martens JW, Silver DP, Langerød A, Russnes HE, Foekens JA, Reis-Filho JS, van 't Veer L, Richardson AL, Børresen-Dale AL, Campbell PJ, Futreal PA, Stratton MR.

Nature. 2009 Dec 24;462(7276):1005-10. doi: 10.1038/nature08645.

18.

A small-cell lung cancer genome with complex signatures of tobacco exposure.

Pleasance ED, Stephens PJ, O'Meara S, McBride DJ, Meynert A, Jones D, Lin ML, Beare D, Lau KW, Greenman C, Varela I, Nik-Zainal S, Davies HR, Ordoñez GR, Mudie LJ, Latimer C, Edkins S, Stebbings L, Chen L, Jia M, Leroy C, Marshall J, Menzies A, Butler A, Teague JW, Mangion J, Sun YA, McLaughlin SF, Peckham HE, Tsung EF, Costa GL, Lee CC, Minna JD, Gazdar A, Birney E, Rhodes MD, McKernan KJ, Stratton MR, Futreal PA, Campbell PJ.

Nature. 2010 Jan 14;463(7278):184-90. doi: 10.1038/nature08629. Epub 2009 Dec 16.

19.

A comprehensive catalogue of somatic mutations from a human cancer genome.

Pleasance ED, Cheetham RK, Stephens PJ, McBride DJ, Humphray SJ, Greenman CD, Varela I, Lin ML, Ordóñez GR, Bignell GR, Ye K, Alipaz J, Bauer MJ, Beare D, Butler A, Carter RJ, Chen L, Cox AJ, Edkins S, Kokko-Gonzales PI, Gormley NA, Grocock RJ, Haudenschild CD, Hims MM, James T, Jia M, Kingsbury Z, Leroy C, Marshall J, Menzies A, Mudie LJ, Ning Z, Royce T, Schulz-Trieglaff OB, Spiridou A, Stebbings LA, Szajkowski L, Teague J, Williamson D, Chin L, Ross MT, Campbell PJ, Bentley DR, Futreal PA, Stratton MR.

Nature. 2010 Jan 14;463(7278):191-6. doi: 10.1038/nature08658. Epub 2009 Dec 16.

20.

Management of calcaneal fractures: systematic review of randomized trials.

Gougoulias N, Khanna A, McBride DJ, Maffulli N.

Br Med Bull. 2009;92:153-67. doi: 10.1093/bmb/ldp030. Review.

PMID:
19734165
21.

Variable bone fragility associated with an Amish COL1A2 variant and a knock-in mouse model.

Daley E, Streeten EA, Sorkin JD, Kuznetsova N, Shapses SA, Carleton SM, Shuldiner AR, Marini JC, Phillips CL, Goldstein SA, Leikin S, McBride DJ Jr.

J Bone Miner Res. 2010 Feb;25(2):247-61. doi: 10.1359/jbmr.090720.

22.

Somatic mutations of the histone H3K27 demethylase gene UTX in human cancer.

van Haaften G, Dalgliesh GL, Davies H, Chen L, Bignell G, Greenman C, Edkins S, Hardy C, O'Meara S, Teague J, Butler A, Hinton J, Latimer C, Andrews J, Barthorpe S, Beare D, Buck G, Campbell PJ, Cole J, Forbes S, Jia M, Jones D, Kok CY, Leroy C, Lin ML, McBride DJ, Maddison M, Maquire S, McLay K, Menzies A, Mironenko T, Mulderrig L, Mudie L, Pleasance E, Shepherd R, Smith R, Stebbings L, Stephens P, Tang G, Tarpey PS, Turner R, Turrell K, Varian J, West S, Widaa S, Wray P, Collins VP, Ichimura K, Law S, Wong J, Yuen ST, Leung SY, Tonon G, DePinho RA, Tai YT, Anderson KC, Kahnoski RJ, Massie A, Khoo SK, Teh BT, Stratton MR, Futreal PA.

Nat Genet. 2009 May;41(5):521-3. doi: 10.1038/ng.349. Epub 2009 Mar 29.

23.

Segregation of type I collagen homo- and heterotrimers in fibrils.

Han S, McBride DJ, Losert W, Leikin S.

J Mol Biol. 2008 Oct 31;383(1):122-32. doi: 10.1016/j.jmb.2008.08.008. Epub 2008 Aug 9.

24.

Autosome-wide linkage analysis of hip structural phenotypes in the Old Order Amish.

Streeten EA, Beck TJ, O'Connell JR, Rampersand E, McBride DJ, Takala SL, Pollin TI, Uusi-Rasi K, Mitchell BD, Shuldiner AR.

Bone. 2008 Sep;43(3):607-12. doi: 10.1016/j.bone.2008.04.005. Epub 2008 Apr 25.

25.

Role of genetic background in determining phenotypic severity throughout postnatal development and at peak bone mass in Col1a2 deficient mice (oim).

Carleton SM, McBride DJ, Carson WL, Huntington CE, Twenter KL, Rolwes KM, Winkelmann CT, Morris JS, Taylor JF, Phillips CL.

Bone. 2008 Apr;42(4):681-94. doi: 10.1016/j.bone.2007.12.215. Epub 2008 Jan 5.

26.

Structural heterogeneity of type I collagen triple helix and its role in osteogenesis imperfecta.

Makareeva E, Mertz EL, Kuznetsova NV, Sutter MB, DeRidder AM, Cabral WA, Barnes AM, McBride DJ, Marini JC, Leikin S.

J Biol Chem. 2008 Feb 22;283(8):4787-98. Epub 2007 Dec 11.

27.

Investigations of the Y chromosome, male founder structure and YSTR mutation rates in the Old Order Amish.

Pollin TI, McBride DJ, Agarwala R, Schäffer AA, Shuldiner AR, Mitchell BD, O'Connell JR.

Hum Hered. 2008;65(2):91-104. Epub 2007 Sep 26.

28.

Ku heterodimer-independent end joining in Trypanosoma brucei cell extracts relies upon sequence microhomology.

Burton P, McBride DJ, Wilkes JM, Barry JD, McCulloch R.

Eukaryot Cell. 2007 Oct;6(10):1773-81. Epub 2007 Aug 10.

29.

Single-nucleotide polymorphisms in the COL1A1 regulatory regions are associated with otosclerosis.

Chen W, Meyer NC, McKenna MJ, Pfister M, McBride DJ Jr, Fukushima K, Thys M, Camp GV, Smith RJ.

Clin Genet. 2007 May;71(5):406-14.

PMID:
17489845
30.
31.

Quantitative trait loci for BMD identified by autosome-wide linkage scan to chromosomes 7q and 21q in men from the Amish Family Osteoporosis Study.

Streeten EA, McBride DJ, Pollin TI, Ryan K, Shapiro J, Ott S, Mitchell BD, Shuldiner AR, O'Connell JR.

J Bone Miner Res. 2006 Sep;21(9):1433-42.

32.

Acute rupture of the Achilles tendon.

Movin T, Ryberg A, McBride DJ, Maffulli N.

Foot Ankle Clin. 2005 Jun;10(2):331-56. Review.

PMID:
15922923
33.

The relationship between parity and bone mineral density in women characterized by a homogeneous lifestyle and high parity.

Streeten EA, Ryan KA, McBride DJ, Pollin TI, Shuldiner AR, Mitchell BD.

J Clin Endocrinol Metab. 2005 Aug;90(8):4536-41. Epub 2005 May 17.

PMID:
15899951
34.

Functional renal artery obstruction following percutaneous kidney biopsy.

Weisbord SD, Ramkumar M, LaPidus SA, McBride DJ, Palevsky PM.

Nephrol Dial Transplant. 2005 Jun;20(6):1274-5. Epub 2005 Apr 19. No abstract available.

PMID:
15840676
35.
36.

Reduced incidence of hip fracture in the Old Order Amish.

Streeten EA, McBride DJ, Lodge AL, Pollin TI, Stinchcomb DG, Agarwala R, Schäffer AA, Shapiro JR, Shuldiner AR, Mitchell BD.

J Bone Miner Res. 2004 Feb;19(2):308-13. Epub 2003 Dec 16.

37.
38.

Osteogenesis imperfecta murine: interaction between type I collagen homotrimers.

Kuznetsova N, McBride DJ Jr, Leikin S.

J Mol Biol. 2001 Jun 8;309(3):807-15.

PMID:
11397098
39.

Myocardial mechanics and collagen structure in the osteogenesis imperfecta murine (oim).

Weis SM, Emery JL, Becker KD, McBride DJ Jr, Omens JH, McCulloch AD.

Circ Res. 2000 Oct 13;87(8):663-9.

PMID:
11029401
40.

Interventions for treating calcaneal fractures.

Bridgman SA, Dunn KM, McBride DJ, Richards PJ.

Cochrane Database Syst Rev. 2000;(2):CD001161. Review. Update in: Cochrane Database Syst Rev. 2008;(4):CD001161.

PMID:
10796422
41.

Bone geometry and strength measurements in aging mice with the oim mutation.

McBride DJ Jr, Shapiro JR, Dunn MG.

Calcif Tissue Int. 1998 Feb;62(2):172-6.

PMID:
9437052
42.

Altered collagen structure in mouse tail tendon lacking the alpha 2(I) chain.

McBride DJ Jr, Choe V, Shapiro JR, Brodsky B.

J Mol Biol. 1997 Jul 11;270(2):275-84.

PMID:
9236128
43.

OIM and related animal models of osteogenesis imperfecta.

Shapiro JR, Mcbride DJ Jr, Fedarko NS.

Connect Tissue Res. 1995;31(4):265-8. Review.

PMID:
15612365
44.

Confirmation of a G nucleotide deletion in the Cola-2 gene of mice with the osteogenesis imperfecta mutation.

McBride DJ Jr, Shapiro JR.

Genomics. 1994 Mar 1;20(1):135-7. No abstract available.

PMID:
8020944
45.

Ligamentum flavum and apophyseal cysts as an unusual cause of root compression.

McBride DJ.

Br J Clin Pract. 1994 Jan-Feb;48(1):52-3.

PMID:
8179988
46.

Defective pro alpha 2(I) collagen synthesis in a recessive mutation in mice: a model of human osteogenesis imperfecta.

Chipman SD, Sweet HO, McBride DJ Jr, Davisson MT, Marks SC Jr, Shuldiner AR, Wenstrup RJ, Rowe DW, Shapiro JR.

Proc Natl Acad Sci U S A. 1993 Mar 1;90(5):1701-5.

47.

Self-assembly into fibrils of a homotrimer of type I collagen.

McBride DJ Jr, Kadler KE, Hojima Y, Prockop DJ.

Matrix. 1992 Aug;12(4):256-63.

PMID:
1435509
48.

A new 500-kDa form of type I procollagen N-proteinase from chick embryo tendons.

Hojima Y, McKenzie J, Kadler KE, McBride DJ, van der Rest M, Mörgelin MM, Engel J, Prockop DJ.

Matrix Suppl. 1992;1:97-8. No abstract available.

PMID:
1480104
49.

A case of tumour simulating pulp space infection.

Farouk AR, McBride DJ, Bingham J.

Br J Clin Pract. 1990 Dec;44(12):737-8.

PMID:
2102220
50.

Blood transfusion requirements in elderly patients with surgically treated fractures of the femoral neck.

McBride DJ, Stother IG.

J R Coll Surg Edinb. 1988 Dec;33(6):311-3. No abstract available.

PMID:
3244136

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