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Items: 33

1.

Comprehensive Single-Shot Proteomics with FAIMS on a Hybrid Orbitrap Mass Spectrometer.

Hebert AS, Prasad S, Belford MW, Bailey DJ, McAlister GC, Abbatiello SE, Huguet R, Wouters ER, Dunyach JJ, Brademan DR, Westphall MS, Coon JJ.

Anal Chem. 2018 Aug 7;90(15):9529-9537. doi: 10.1021/acs.analchem.8b02233. Epub 2018 Jul 18.

2.

Improved Precursor Characterization for Data-Dependent Mass Spectrometry.

Hebert AS, Thöing C, Riley NM, Kwiecien NW, Shiskova E, Huguet R, Cardasis HL, Kuehn A, Eliuk S, Zabrouskov V, Westphall MS, McAlister GC, Coon JJ.

Anal Chem. 2018 Feb 6;90(3):2333-2340. doi: 10.1021/acs.analchem.7b04808. Epub 2018 Jan 11.

3.

A Strategy to Combine Sample Multiplexing with Targeted Proteomics Assays for High-Throughput Protein Signature Characterization.

Erickson BK, Rose CM, Braun CR, Erickson AR, Knott J, McAlister GC, Wühr M, Paulo JA, Everley RA, Gygi SP.

Mol Cell. 2017 Jan 19;65(2):361-370. doi: 10.1016/j.molcel.2016.12.005. Epub 2017 Jan 5.

4.

The Nuclear Proteome of a Vertebrate.

Wühr M, Güttler T, Peshkin L, McAlister GC, Sonnett M, Ishihara K, Groen AC, Presler M, Erickson BK, Mitchison TJ, Kirschner MW, Gygi SP.

Curr Biol. 2015 Oct 19;25(20):2663-71. doi: 10.1016/j.cub.2015.08.047. Epub 2015 Oct 1.

5.

Evaluating multiplexed quantitative phosphopeptide analysis on a hybrid quadrupole mass filter/linear ion trap/orbitrap mass spectrometer.

Erickson BK, Jedrychowski MP, McAlister GC, Everley RA, Kunz R, Gygi SP.

Anal Chem. 2015 Jan 20;87(2):1241-9. doi: 10.1021/ac503934f. Epub 2015 Jan 6.

6.

MultiNotch MS3 enables accurate, sensitive, and multiplexed detection of differential expression across cancer cell line proteomes.

McAlister GC, Nusinow DP, Jedrychowski MP, Wühr M, Huttlin EL, Erickson BK, Rad R, Haas W, Gygi SP.

Anal Chem. 2014 Jul 15;86(14):7150-8. doi: 10.1021/ac502040v. Epub 2014 Jul 3.

7.

Activated ion ETD performed in a modified collision cell on a hybrid QLT-Oribtrap mass spectrometer.

Ledvina AR, Rose CM, McAlister GC, Syka JE, Westphall MS, Griep-Raming J, Schwartz JC, Coon JJ.

J Am Soc Mass Spectrom. 2013 Nov;24(11):1623-33. doi: 10.1007/s13361-013-0621-1. Epub 2013 May 16.

8.

Multipurpose dissociation cell for enhanced ETD of intact protein species.

Rose CM, Russell JD, Ledvina AR, McAlister GC, Westphall MS, Griep-Raming J, Schwartz JC, Coon JJ, Syka JE.

J Am Soc Mass Spectrom. 2013 Jun;24(6):816-27. doi: 10.1007/s13361-013-0622-0. Epub 2013 Apr 23.

9.

Accurate multiplexed proteomics at the MS2 level using the complement reporter ion cluster.

Wühr M, Haas W, McAlister GC, Peshkin L, Rad R, Kirschner MW, Gygi SP.

Anal Chem. 2012 Nov 6;84(21):9214-21. doi: 10.1021/ac301962s. Epub 2012 Oct 25.

10.

The membrane stress response buffers lethal effects of lipid disequilibrium by reprogramming the protein homeostasis network.

Thibault G, Shui G, Kim W, McAlister GC, Ismail N, Gygi SP, Wenk MR, Ng DT.

Mol Cell. 2012 Oct 12;48(1):16-27. doi: 10.1016/j.molcel.2012.08.016. Epub 2012 Sep 20.

11.

Increasing the multiplexing capacity of TMTs using reporter ion isotopologues with isobaric masses.

McAlister GC, Huttlin EL, Haas W, Ting L, Jedrychowski MP, Rogers JC, Kuhn K, Pike I, Grothe RA, Blethrow JD, Gygi SP.

Anal Chem. 2012 Sep 4;84(17):7469-78. doi: 10.1021/ac301572t. Epub 2012 Aug 20.

12.

Instant spectral assignment for advanced decision tree-driven mass spectrometry.

Bailey DJ, Rose CM, McAlister GC, Brumbaugh J, Yu P, Wenger CD, Westphall MS, Thomson JA, Coon JJ.

Proc Natl Acad Sci U S A. 2012 May 29;109(22):8411-6. doi: 10.1073/pnas.1205292109. Epub 2012 May 14.

13.

Infrared multiphoton dissociation for quantitative shotgun proteomics.

Ledvina AR, Lee MV, McAlister GC, Westphall MS, Coon JJ.

Anal Chem. 2012 May 15;84(10):4513-9. doi: 10.1021/ac300367p. Epub 2012 Apr 23.

14.

Analysis of the acidic proteome with negative electron-transfer dissociation mass spectrometry.

McAlister GC, Russell JD, Rumachik NG, Hebert AS, Syka JE, Geer LY, Westphall MS, Pagliarini DJ, Coon JJ.

Anal Chem. 2012 Mar 20;84(6):2875-82. doi: 10.1021/ac203430u. Epub 2012 Mar 1.

15.

Characterizing peptide neutral losses induced by negative electron-transfer dissociation (NETD).

Rumachik NG, McAlister GC, Russell JD, Bailey DJ, Wenger CD, Coon JJ.

J Am Soc Mass Spectrom. 2012 Apr;23(4):718-27. doi: 10.1007/s13361-011-0331-5.

16.

Gas-phase purification enables accurate, multiplexed proteome quantification with isobaric tagging.

Wenger CD, Lee MV, Hebert AS, McAlister GC, Phanstiel DH, Westphall MS, Coon JJ.

Nat Methods. 2011 Oct 2;8(11):933-5. doi: 10.1038/nmeth.1716.

17.

Higher-energy collision-activated dissociation without a dedicated collision cell.

McAlister GC, Phanstiel DH, Brumbaugh J, Westphall MS, Coon JJ.

Mol Cell Proteomics. 2011 May;10(5):O111.009456. doi: 10.1074/mcp.O111.009456. Epub 2011 Mar 10.

18.

Activated-ion electron transfer dissociation improves the ability of electron transfer dissociation to identify peptides in a complex mixture.

Ledvina AR, Beauchene NA, McAlister GC, Syka JE, Schwartz JC, Griep-Raming J, Westphall MS, Coon JJ.

Anal Chem. 2010 Dec 15;82(24):10068-74. doi: 10.1021/ac1020358. Epub 2010 Nov 9.

19.

Development and characterization of a GC-enabled QLT-Orbitrap for high-resolution and high-mass accuracy GC/MS.

Peterson AC, McAlister GC, Quarmby ST, Griep-Raming J, Coon JJ.

Anal Chem. 2010 Oct 15;82(20):8618-28. doi: 10.1021/ac101757m.

PMID:
20815337
20.

Sub-part-per-million precursor and product mass accuracy for high-throughput proteomics on an electron transfer dissociation-enabled orbitrap mass spectrometer.

Wenger CD, McAlister GC, Xia Q, Coon JJ.

Mol Cell Proteomics. 2010 May;9(5):754-63. doi: 10.1074/mcp.M900541-MCP200. Epub 2010 Feb 2.

21.

Analysis of tandem mass spectra by FTMS for improved large-scale proteomics with superior protein quantification.

McAlister GC, Phanstiel D, Wenger CD, Lee MV, Coon JJ.

Anal Chem. 2010 Jan 1;82(1):316-22. doi: 10.1021/ac902005s.

22.

Infrared photoactivation reduces peptide folding and hydrogen-atom migration following ETD tandem mass spectrometry.

Ledvina AR, McAlister GC, Gardner MW, Smith SI, Madsen JA, Schwartz JC, Stafford GC Jr, Syka JE, Brodbelt JS, Coon JJ.

Angew Chem Int Ed Engl. 2009;48(45):8526-8. doi: 10.1002/anie.200903557. No abstract available.

23.

In vacuo formation of peptide-metal coordination complexes.

McAlister GC, Kiessel SE, Coon JJ.

Int J Mass Spectrom. 2008 Oct 1;276(2-3):149-152.

24.

Post-acquisition ETD spectral processing for increased peptide identifications.

Good DM, Wenger CD, McAlister GC, Bai DL, Hunt DF, Coon JJ.

J Am Soc Mass Spectrom. 2009 Aug;20(8):1435-40. doi: 10.1016/j.jasms.2009.03.006. Epub 2009 Mar 14.

25.

Peptide quantification using 8-plex isobaric tags and electron transfer dissociation tandem mass spectrometry.

Phanstiel D, Unwin R, McAlister GC, Coon JJ.

Anal Chem. 2009 Feb 15;81(4):1693-8. doi: 10.1021/ac8019202.

26.

Decision tree-driven tandem mass spectrometry for shotgun proteomics.

Swaney DL, McAlister GC, Coon JJ.

Nat Methods. 2008 Nov;5(11):959-64. doi: 10.1038/nmeth.1260. Epub 2008 Oct 19.

27.

A proteomics grade electron transfer dissociation-enabled hybrid linear ion trap-orbitrap mass spectrometer.

McAlister GC, Berggren WT, Griep-Raming J, Horning S, Makarov A, Phanstiel D, Stafford G, Swaney DL, Syka JE, Zabrouskov V, Coon JJ.

J Proteome Res. 2008 Aug;7(8):3127-36. doi: 10.1021/pr800264t. Epub 2008 Jul 10.

28.

Valence parity renders z(*)-type ions chemically distinct.

Hubler SL, Jue A, Keith J, McAlister GC, Craciun G, Coon JJ.

J Am Chem Soc. 2008 May 21;130(20):6388-94. doi: 10.1021/ja7099985. Epub 2008 Apr 29.

29.

Mass spectrometry identifies and quantifies 74 unique histone H4 isoforms in differentiating human embryonic stem cells.

Phanstiel D, Brumbaugh J, Berggren WT, Conard K, Feng X, Levenstein ME, McAlister GC, Thomson JA, Coon JJ.

Proc Natl Acad Sci U S A. 2008 Mar 18;105(11):4093-8. doi: 10.1073/pnas.0710515105. Epub 2008 Mar 7.

30.

Dual electrospray ion source for electron-transfer dissociation on a hybrid linear ion trap-orbitrap mass spectrometer.

Williams DK Jr, McAlister GC, Good DM, Coon JJ, Muddiman DC.

Anal Chem. 2007 Oct 15;79(20):7916-9. Epub 2007 Sep 15.

31.

Performance characteristics of electron transfer dissociation mass spectrometry.

Good DM, Wirtala M, McAlister GC, Coon JJ.

Mol Cell Proteomics. 2007 Nov;6(11):1942-51. Epub 2007 Aug 1.

32.

Implementation of electron-transfer dissociation on a hybrid linear ion trap-orbitrap mass spectrometer.

McAlister GC, Phanstiel D, Good DM, Berggren WT, Coon JJ.

Anal Chem. 2007 May 15;79(10):3525-34. Epub 2007 Apr 19.

33.

Supplemental activation method for high-efficiency electron-transfer dissociation of doubly protonated peptide precursors.

Swaney DL, McAlister GC, Wirtala M, Schwartz JC, Syka JE, Coon JJ.

Anal Chem. 2007 Jan 15;79(2):477-85.

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