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Multireader Determination of Clinically Significant Obstruction Using Hyperpolarized 129Xe-Ventilation MRI.

Ebner L, Virgincar RS, He M, Choudhury KR, Robertson SH, Christe A, Mileto A, Mammarapallil JG, McAdams HP, Driehuys B, Roos JE.

AJR Am J Roentgenol. 2019 Apr;212(4):758-765. doi: 10.2214/AJR.18.20036. Epub 2019 Feb 19.


Pulses of Melanopsin-Directed Contrast Produce Highly Reproducible Pupil Responses That Are Insensitive to a Change in Background Radiance.

McAdams H, Igdalova A, Spitschan M, Brainard DH, Aguirre GK.

Invest Ophthalmol Vis Sci. 2018 Nov 1;59(13):5615-5626. doi: 10.1167/iovs.18-25219.


A protocol for quantifying cardiogenic oscillations in dynamic 129 Xe gas exchange spectroscopy: The effects of idiopathic pulmonary fibrosis.

Bier EA, Robertson SH, Schrank GM, Rackley C, Mammarappallil JG, Rajagopal S, McAdams HP, Driehuys B.

NMR Biomed. 2019 Jan;32(1):e4029. doi: 10.1002/nbm.4029. Epub 2018 Nov 20.


Managing Incidental Findings on Thoracic CT: Mediastinal and Cardiovascular Findings. A White Paper of the ACR Incidental Findings Committee.

Munden RF, Carter BW, Chiles C, MacMahon H, Black WC, Ko JP, McAdams HP, Rossi SE, Leung AN, Boiselle PM, Kent MS, Brown K, Dyer DS, Hartman TE, Goodman EM, Naidich DP, Kazerooni EA, Berland LL, Pandharipande PV.

J Am Coll Radiol. 2018 Aug;15(8):1087-1096. doi: 10.1016/j.jacr.2018.04.029. Epub 2018 Jun 22.


Attenuated resting-state functional connectivity in patients with childhood- and adult-onset schizophrenia.

Watsky RE, Gotts SJ, Berman RA, McAdams HM, Zhou X, Greenstein D, Lalonde FM, Gochman P, Clasen LS, Shora L, Ordóñez AE, Gogtay N, Martin A, Barch DM, Rapoport JL, Liu S.

Schizophr Res. 2018 Jan 6. pii: S0920-9964(18)30003-3. doi: 10.1016/j.schres.2018.01.003. [Epub ahead of print]


Uncovering a third dissolved-phase 129 Xe resonance in the human lung: Quantifying spectroscopic features in healthy subjects and patients with idiopathic pulmonary fibrosis.

Robertson SH, Virgincar RS, Bier EA, He M, Schrank GM, Smigla RM, Rackley C, McAdams HP, Driehuys B.

Magn Reson Med. 2017 Oct;78(4):1306-1315. doi: 10.1002/mrm.26533. Epub 2016 Nov 8.


Quantitative analysis of hyperpolarized 129 Xe gas transfer MRI.

Wang Z, Robertson SH, Wang J, He M, Virgincar RS, Schrank GM, Bier EA, Rajagopal S, Huang YC, O'Riordan TG, Rackley CR, McAdams HP, Driehuys B.

Med Phys. 2017 Jun;44(6):2415-2428. doi: 10.1002/mp.12264. Epub 2017 May 18.


Novel Magnetic Resonance Imaging for Assessment of Bronchial Stenosis in Lung Transplant Recipients.

Mahmood K, Ebner L, He M, Robertson SH, Wang Z, McAdams HP, Wahidi MM, Shofer SL, Huang YT, Driehuys B.

Am J Transplant. 2017 Jul;17(7):1895-1904. doi: 10.1111/ajt.14287. Epub 2017 May 8.


Dynamic translation regulation in Caulobacter cell cycle control.

Schrader JM, Li GW, Childers WS, Perez AM, Weissman JS, Shapiro L, McAdams HH.

Proc Natl Acad Sci U S A. 2016 Nov 1;113(44):E6859-E6867. Epub 2016 Oct 17.


Hyperpolarized 129Xenon Magnetic Resonance Imaging to Quantify Regional Ventilation Differences in Mild to Moderate Asthma: A Prospective Comparison Between Semiautomated Ventilation Defect Percentage Calculation and Pulmonary Function Tests.

Ebner L, He M, Virgincar RS, Heacock T, Kaushik SS, Freemann MS, McAdams HP, Kraft M, Driehuys B.

Invest Radiol. 2017 Feb;52(2):120-127. doi: 10.1097/RLI.0000000000000322.


Cell cycle progression in Caulobacter requires a nucleoid-associated protein with high AT sequence recognition.

Ricci DP, Melfi MD, Lasker K, Dill DL, McAdams HH, Shapiro L.

Proc Natl Acad Sci U S A. 2016 Oct 4;113(40):E5952-E5961. Epub 2016 Sep 19.


Multi-Institutional Evaluation of Digital Tomosynthesis, Dual-Energy Radiography, and Conventional Chest Radiography for the Detection and Management of Pulmonary Nodules.

Dobbins JT 3rd, McAdams HP, Sabol JM, Chakraborty DP, Kazerooni EA, Reddy GP, Vikgren J, Båth M.

Radiology. 2017 Jan;282(1):236-250. doi: 10.1148/radiol.2016150497. Epub 2016 Jul 19.


Abnormalities in hyperpolarized (129)Xe magnetic resonance imaging and spectroscopy in two patients with pulmonary vascular disease.

Dahhan T, Kaushik SS, He M, Mammarappallil JG, Tapson VF, McAdams HP, Sporn TA, Driehuys B, Rajagopal S.

Pulm Circ. 2016 Mar;6(1):126-31. doi: 10.1086/685110.


Percutaneous transthoracic localization of pulmonary nodules under C-arm cone-beam CT virtual navigation guidance.

Kim TH, Park CM, Lee SM, McAdams HP, Kim YT, Goo JM.

Diagn Interv Radiol. 2016 May-Jun;22(3):224-30. doi: 10.5152/dir.2015.15297.


Disrupted sensorimotor and social-cognitive networks underlie symptoms in childhood-onset schizophrenia.

Berman RA, Gotts SJ, McAdams HM, Greenstein D, Lalonde F, Clasen L, Watsky RE, Shora L, Ordonez AE, Raznahan A, Martin A, Gogtay N, Rapoport J.

Brain. 2016 Jan;139(Pt 1):276-91. doi: 10.1093/brain/awv306. Epub 2015 Oct 22.


CauloBrowser: A systems biology resource for Caulobacter crescentus.

Lasker K, Schrader JM, Men Y, Marshik T, Dill DL, McAdams HH, Shapiro L.

Nucleic Acids Res. 2016 Jan 4;44(D1):D640-5. doi: 10.1093/nar/gkv1050. Epub 2015 Oct 17.


Persistent pulmonary subsolid nodules with solid portions of 5 mm or smaller: Their natural course and predictors of interval growth.

Lee JH, Park CM, Lee SM, Kim H, McAdams HP, Goo JM.

Eur Radiol. 2016 Jun;26(6):1529-37. doi: 10.1007/s00330-015-4017-4. Epub 2015 Sep 18.


A Meta-analysis of Transcranial Direct Current Stimulation Studies Examining the Reliability of Effects on Language Measures.

Price AR, McAdams H, Grossman M, Hamilton RH.

Brain Stimul. 2015 Nov-Dec;8(6):1093-100. doi: 10.1016/j.brs.2015.06.013. Epub 2015 Jun 27.


Delayed Development of Brain Connectivity in Adolescents With Schizophrenia and Their Unaffected Siblings.

Zalesky A, Pantelis C, Cropley V, Fornito A, Cocchi L, McAdams H, Clasen L, Greenstein D, Rapoport JL, Gogtay N.

JAMA Psychiatry. 2015 Sep;72(9):900-8. doi: 10.1001/jamapsychiatry.2015.0226.


Persistent Pure Ground-Glass Nodules Larger Than 5 mm: Differentiation of Invasive Pulmonary Adenocarcinomas From Preinvasive Lesions or Minimally Invasive Adenocarcinomas Using Texture Analysis.

Hwang IP, Park CM, Park SJ, Lee SM, McAdams HP, Jeon YK, Goo JM.

Invest Radiol. 2015 Nov;50(11):798-804. doi: 10.1097/RLI.0000000000000186.


Prognostic value of computed tomography texture features in non-small cell lung cancers treated with definitive concomitant chemoradiotherapy.

Ahn SY, Park CM, Park SJ, Kim HJ, Song C, Lee SM, McAdams HP, Goo JM.

Invest Radiol. 2015 Oct;50(10):719-25. doi: 10.1097/RLI.0000000000000174.


Single-breath clinical imaging of hyperpolarized (129)Xe in the airspaces, barrier, and red blood cells using an interleaved 3D radial 1-point Dixon acquisition.

Kaushik SS, Robertson SH, Freeman MS, He M, Kelly KT, Roos JE, Rackley CR, Foster WM, McAdams HP, Driehuys B.

Magn Reson Med. 2016 Apr;75(4):1434-43. doi: 10.1002/mrm.25675. Epub 2015 May 18.


Hyperpolarized Gas MR Imaging: Technique and Applications.

Roos JE, McAdams HP, Kaushik SS, Driehuys B.

Magn Reson Imaging Clin N Am. 2015 May;23(2):217-29. doi: 10.1016/j.mric.2015.01.003. Review.


Dose and pulse sequence considerations for hyperpolarized (129)Xe ventilation MRI.

He M, Robertson SH, Kaushik SS, Freeman MS, Virgincar RS, Davies J, Stiles J, Foster WM, McAdams HP, Driehuys B.

Magn Reson Imaging. 2015 Sep;33(7):877-85. doi: 10.1016/j.mri.2015.04.005. Epub 2015 Apr 30.


The global regulatory architecture of transcription during the Caulobacter cell cycle.

Zhou B, Schrader JM, Kalogeraki VS, Abeliuk E, Dinh CB, Pham JQ, Cui ZZ, Dill DL, McAdams HH, Shapiro L.

PLoS Genet. 2015 Jan 8;11(1):e1004831. doi: 10.1371/journal.pgen.1004831. eCollection 2015 Jan.


Automated characterization of perceptual quality of clinical chest radiographs: validation and calibration to observer preference.

Samei E, Lin Y, Choudhury KR, McAdams HP.

Med Phys. 2014 Nov;41(11):111918. doi: 10.1118/1.4899183.


Extending semiautomatic ventilation defect analysis for hyperpolarized (129)Xe ventilation MRI.

He M, Kaushik SS, Robertson SH, Freeman MS, Virgincar RS, McAdams HP, Driehuys B.

Acad Radiol. 2014 Dec;21(12):1530-41. doi: 10.1016/j.acra.2014.07.017. Epub 2014 Sep 26.


Comparing fractional anisotropy in patients with childhood-onset schizophrenia, their healthy siblings, and normal volunteers through DTI.

Moran ME, Luscher ZI, McAdams H, Hsu JT, Greenstein D, Clasen L, Ludovici K, Lloyd J, Rapoport J, Mori S, Gogtay N.

Schizophr Bull. 2015 Jan;41(1):66-73. doi: 10.1093/schbul/sbu123. Epub 2014 Sep 12.


The coding and noncoding architecture of the Caulobacter crescentus genome.

Schrader JM, Zhou B, Li GW, Lasker K, Childers WS, Williams B, Long T, Crosson S, McAdams HH, Weissman JS, Shapiro L.

PLoS Genet. 2014 Jul 31;10(7):e1004463. doi: 10.1371/journal.pgen.1004463. eCollection 2014 Jul.


Measuring diffusion limitation with a perfusion-limited gas--hyperpolarized 129Xe gas-transfer spectroscopy in patients with idiopathic pulmonary fibrosis.

Kaushik SS, Freeman MS, Yoon SW, Liljeroth MG, Stiles JV, Roos JE, Foster W, Rackley CR, McAdams HP, Driehuys B.

J Appl Physiol (1985). 2014 Sep 15;117(6):577-85. doi: 10.1152/japplphysiol.00326.2014. Epub 2014 Jul 18.


Abnormal cortical growth in schizophrenia targets normative modules of synchronized development.

Alexander-Bloch AF, Reiss PT, Rapoport J, McAdams H, Giedd JN, Bullmore ET, Gogtay N.

Biol Psychiatry. 2014 Sep 15;76(6):438-46. doi: 10.1016/j.biopsych.2014.02.010. Epub 2014 Feb 22.


The functions of DNA methylation by CcrM in Caulobacter crescentus: a global approach.

Gonzalez D, Kozdon JB, McAdams HH, Shapiro L, Collier J.

Nucleic Acids Res. 2014 Apr;42(6):3720-35. doi: 10.1093/nar/gkt1352. Epub 2014 Jan 7.


Global methylation state at base-pair resolution of the Caulobacter genome throughout the cell cycle.

Kozdon JB, Melfi MD, Luong K, Clark TA, Boitano M, Wang S, Zhou B, Gonzalez D, Collier J, Turner SW, Korlach J, Shapiro L, McAdams HH.

Proc Natl Acad Sci U S A. 2013 Nov 26;110(48):E4658-67. doi: 10.1073/pnas.1319315110. Epub 2013 Nov 11.


Probing the regional distribution of pulmonary gas exchange through single-breath gas- and dissolved-phase 129Xe MR imaging.

Kaushik SS, Freeman MS, Cleveland ZI, Davies J, Stiles J, Virgincar RS, Robertson SH, He M, Kelly KT, Foster WM, McAdams HP, Driehuys B.

J Appl Physiol (1985). 2013 Sep;115(6):850-60. doi: 10.1152/japplphysiol.00092.2013. Epub 2013 Jul 11.


At the boundary of the self: the insular cortex in patients with childhood-onset schizophrenia, their healthy siblings, and normal volunteers.

Moran ME, Weisinger B, Ludovici K, McAdams H, Greenstein D, Gochman P, Miller R, Clasen L, Rapoport J, Gogtay N.

Int J Dev Neurosci. 2014 Feb;32:58-63. doi: 10.1016/j.ijdevneu.2013.05.010. Epub 2013 Jun 11.


Perfluoropropane gas as a magnetic resonance lung imaging contrast agent in humans.

Halaweish AF, Moon RE, Foster WM, Soher BJ, McAdams HP, MacFall JR, Ainslie MD, MacIntyre NR, Charles HC.

Chest. 2013 Oct;144(4):1300-1310. doi: 10.1378/chest.12-2597.


The effect of averaging adjacent planes for artifact reduction in matrix inversion tomosynthesis.

Godfrey DJ, McAdams HP, Dobbins JT 3rd.

Med Phys. 2013 Feb;40(2):021907. doi: 10.1118/1.4773891.


Caulobacter chromosome in vivo configuration matches model predictions for a supercoiled polymer in a cell-like confinement.

Hong SH, Toro E, Mortensen KI, de la Rosa MA, Doniach S, Shapiro L, Spakowitz AJ, McAdams HH.

Proc Natl Acad Sci U S A. 2013 Jan 29;110(5):1674-9. doi: 10.1073/pnas.1220824110. Epub 2013 Jan 14.


Quantitative analysis of hyperpolarized 129Xe ventilation imaging in healthy volunteers and subjects with chronic obstructive pulmonary disease.

Virgincar RS, Cleveland ZI, Kaushik SS, Freeman MS, Nouls J, Cofer GP, Martinez-Jimenez S, He M, Kraft M, Wolber J, McAdams HP, Driehuys B.

NMR Biomed. 2013 Apr;26(4):424-35. doi: 10.1002/nbm.2880. Epub 2012 Oct 13.


Three enhancements to the inference of statistical protein-DNA potentials.

AlQuraishi M, McAdams HH.

Proteins. 2013 Mar;81(3):426-42. doi: 10.1002/prot.24201. Epub 2012 Nov 12.


Gray-scale inversion radiographic display for the detection of pulmonary nodules on chest radiographs.

Lungren MP, Samei E, Barnhart H, McAdams HP, Leder RA, Christensen JD, Wylie JD, Tan JW, Li X, Hurwitz LM.

Clin Imaging. 2012 Sep-Oct;36(5):515-21. doi: 10.1016/j.clinimag.2012.01.009. Epub 2012 Jun 8.


A computerized scheme for lung nodule detection in multiprojection chest radiography.

Guo W, Li Q, Boyce SJ, McAdams HP, Shiraishi J, Doi K, Samei E.

Med Phys. 2012 Apr;39(4):2001-12. doi: 10.1118/1.3694096.


Preliminary evaluation of biplane correlation (BCI) stereographic imaging for lung nodule detection.

Boyce SJ, McAdams HP, Ravin CE, Patz EF Jr, Washington L, Martinez S, Koweek L, Samei E.

J Digit Imaging. 2013 Feb;26(1):109-14. doi: 10.1007/s10278-012-9466-6.


The effects of ambient lighting in chest radiology reading rooms.

Pollard BJ, Samei E, Chawla AS, Beam C, Heyneman LE, Koweek LM, Martinez-Jimenez S, Washington L, Hashimoto N, McAdams HP.

J Digit Imaging. 2012 Aug;25(4):520-6. doi: 10.1007/s10278-012-9459-5.


Compaction and transport properties of newly replicated Caulobacter crescentus DNA.

Hong SH, McAdams HH.

Mol Microbiol. 2011 Dec;82(6):1349-58. doi: 10.1111/j.1365-2958.2011.07899.x. Epub 2011 Nov 16.


Chronic obstructive pulmonary disease: safety and tolerability of hyperpolarized 129Xe MR imaging in healthy volunteers and patients.

Driehuys B, Martinez-Jimenez S, Cleveland ZI, Metz GM, Beaver DM, Nouls JC, Kaushik SS, Firszt R, Willis C, Kelly KT, Wolber J, Kraft M, McAdams HP.

Radiology. 2012 Jan;262(1):279-89. doi: 10.1148/radiol.11102172. Epub 2011 Nov 4.


The three-dimensional architecture of a bacterial genome and its alteration by genetic perturbation.

Umbarger MA, Toro E, Wright MA, Porreca GJ, Baù D, Hong SH, Fero MJ, Zhu LJ, Marti-Renom MA, McAdams HH, Shapiro L, Dekker J, Church GM.

Mol Cell. 2011 Oct 21;44(2):252-64. doi: 10.1016/j.molcel.2011.09.010.


The essential genome of a bacterium.

Christen B, Abeliuk E, Collier JM, Kalogeraki VS, Passarelli B, Coller JA, Fero MJ, McAdams HH, Shapiro L.

Mol Syst Biol. 2011 Aug 30;7:528. doi: 10.1038/msb.2011.58.


Direct inference of protein-DNA interactions using compressed sensing methods.

AlQuraishi M, McAdams HH.

Proc Natl Acad Sci U S A. 2011 Sep 6;108(36):14819-24. doi: 10.1073/pnas.1106460108. Epub 2011 Aug 8.


Fifty years after Jacob and Monod: what are the unanswered questions in molecular biology?

Kirschner MW, Shapiro L, McAdams H, Almouzni G, Sharp PA, Young RA, Alon U.

Mol Cell. 2011 May 20;42(4):403-4. No abstract available.

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