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Items: 1 to 50 of 103

1.

Particulate methane monooxygenase contains only mononuclear copper centers.

Ross MO, MacMillan F, Wang J, Nisthal A, Lawton TJ, Olafson BD, Mayo SL, Rosenzweig AC, Hoffman BM.

Science. 2019 May 10;364(6440):566-570. doi: 10.1126/science.aav2572.

PMID:
31073062
2.

ProtaBank: A repository for protein design and engineering data.

Wang CY, Chang PM, Ary ML, Allen BD, Chica RA, Mayo SL, Olafson BD.

Protein Sci. 2019 Mar;28(3):672. doi: 10.1002/pro.3585. No abstract available.

3.

Monomerization of far-red fluorescent proteins.

Wannier TM, Gillespie SK, Hutchins N, McIsaac RS, Wu SY, Shen Y, Campbell RE, Brown KS, Mayo SL.

Proc Natl Acad Sci U S A. 2018 Nov 27;115(48):E11294-E11301. doi: 10.1073/pnas.1807449115. Epub 2018 Nov 13.

4.

ProtaBank: A repository for protein design and engineering data.

Wang CY, Chang PM, Ary ML, Allen BD, Chica RA, Mayo SL, Olafson BD.

Protein Sci. 2018 Jun;27(6):1113-1124. doi: 10.1002/pro.3406. Epub 2018 Apr 30. Erratum in: Protein Sci. 2019 Mar;28(3):672.

5.

A General Tool for Engineering the NAD/NADP Cofactor Preference of Oxidoreductases.

Cahn JK, Werlang CA, Baumschlager A, Brinkmann-Chen S, Mayo SL, Arnold FH.

ACS Synth Biol. 2017 Feb 17;6(2):326-333. doi: 10.1021/acssynbio.6b00188. Epub 2016 Oct 5.

PMID:
27648601
6.

Cell-free protein synthesis enables high yielding synthesis of an active multicopper oxidase.

Li J, Lawton TJ, Kostecki JS, Nisthal A, Fang J, Mayo SL, Rosenzweig AC, Jewett MC.

Biotechnol J. 2016 Feb;11(2):212-8. doi: 10.1002/biot.201500030. Epub 2015 Sep 10.

PMID:
26356243
7.

Computational design of co-assembling protein-DNA nanowires.

Mou Y, Yu JY, Wannier TM, Guo CL, Mayo SL.

Nature. 2015 Sep 10;525(7568):230-3. doi: 10.1038/nature14874. Epub 2015 Sep 2.

PMID:
26331548
8.

Computational design and experimental verification of a symmetric protein homodimer.

Mou Y, Huang PS, Hsu FC, Huang SJ, Mayo SL.

Proc Natl Acad Sci U S A. 2015 Aug 25;112(34):10714-9. doi: 10.1073/pnas.1505072112. Epub 2015 Aug 12.

9.

Engineering Transcriptional Regulator Effector Specificity Using Computational Design and In Vitro Rapid Prototyping: Developing a Vanillin Sensor.

de los Santos EL, Meyerowitz JT, Mayo SL, Murray RM.

ACS Synth Biol. 2016 Apr 15;5(4):287-95. doi: 10.1021/acssynbio.5b00090. Epub 2015 Aug 19.

PMID:
26262913
10.

Using Molecular Dynamics Simulations as an Aid in the Prediction of Domain Swapping of Computationally Designed Protein Variants.

Mou Y, Huang PS, Thomas LM, Mayo SL.

J Mol Biol. 2015 Aug 14;427(16):2697-706. doi: 10.1016/j.jmb.2015.06.006. Epub 2015 Jun 21.

PMID:
26101839
11.

Computational Design of the β-Sheet Surface of a Red Fluorescent Protein Allows Control of Protein Oligomerization.

Wannier TM, Moore MM, Mou Y, Mayo SL.

PLoS One. 2015 Jun 15;10(6):e0130582. doi: 10.1371/journal.pone.0130582. eCollection 2015.

12.

Homeodomain Proteins SIX3 and SIX6 Regulate Gonadotrope-specific Genes During Pituitary Development.

Xie H, Hoffmann HM, Meadows JD, Mayo SL, Trang C, Leming SS, Maruggi C, Davis SW, Larder R, Mellon PL.

Mol Endocrinol. 2015 Jun;29(6):842-55. doi: 10.1210/me.2014-1279. Epub 2015 Apr 27.

13.

The structure of a far-red fluorescent protein, AQ143, shows evidence in support of reported red-shifting chromophore interactions.

Wannier TM, Mayo SL.

Protein Sci. 2014 Aug;23(8):1148-53. doi: 10.1002/pro.2498. Epub 2014 Jun 14.

14.

Precision is essential for efficient catalysis in an evolved Kemp eliminase.

Blomberg R, Kries H, Pinkas DM, Mittl PR, Grütter MG, Privett HK, Mayo SL, Hilvert D.

Nature. 2013 Nov 21;503(7476):418-21. doi: 10.1038/nature12623. Epub 2013 Oct 16.

PMID:
24132235
15.

Mechanism of an ATP-independent protein disaggregase: II. distinct molecular interactions drive multiple steps during aggregate disassembly.

Jaru-Ampornpan P, Liang FC, Nisthal A, Nguyen TX, Wang P, Shen K, Mayo SL, Shan SO.

J Biol Chem. 2013 May 10;288(19):13431-45. doi: 10.1074/jbc.M113.462861. Epub 2013 Mar 21.

16.

Recovery of red fluorescent protein chromophore maturation deficiency through rational design.

Moore MM, Oteng-Pabi SK, Pandelieva AT, Mayo SL, Chica RA.

PLoS One. 2012;7(12):e52463. doi: 10.1371/journal.pone.0052463. Epub 2012 Dec 20.

17.

GRID: a high-resolution protein structure refinement algorithm.

Chitsaz M, Mayo SL.

J Comput Chem. 2013 Mar 5;34(6):445-50. doi: 10.1002/jcc.23151. Epub 2012 Oct 15.

PMID:
23065773
18.

FOXO1 transcription factor inhibits luteinizing hormone β gene expression in pituitary gonadotrope cells.

Arriola DJ, Mayo SL, Skarra DV, Benson CA, Thackray VG.

J Biol Chem. 2012 Sep 28;287(40):33424-35. Epub 2012 Aug 3.

19.

Structural, kinetic, and thermodynamic studies of specificity designed HIV-1 protease.

Alvizo O, Mittal S, Mayo SL, Schiffer CA.

Protein Sci. 2012 Jul;21(7):1029-41. doi: 10.1002/pro.2086. Epub 2012 Jun 5.

20.

Iterative approach to computational enzyme design.

Privett HK, Kiss G, Lee TM, Blomberg R, Chica RA, Thomas LM, Hilvert D, Houk KN, Mayo SL.

Proc Natl Acad Sci U S A. 2012 Mar 6;109(10):3790-5. doi: 10.1073/pnas.1118082108. Epub 2012 Feb 22.

21.

Comparison of random mutagenesis and semi-rational designed libraries for improved cytochrome P450 BM3-catalyzed hydroxylation of small alkanes.

Chen MM, Snow CD, Vizcarra CL, Mayo SL, Arnold FH.

Protein Eng Des Sel. 2012 Apr;25(4):171-8. doi: 10.1093/protein/gzs004. Epub 2012 Feb 14.

PMID:
22334757
22.

A structural study of Hypocrea jecorina Cel5A.

Lee TM, Farrow MF, Arnold FH, Mayo SL.

Protein Sci. 2011 Nov;20(11):1935-40. doi: 10.1002/pro.730. Epub 2011 Sep 27.

23.

Designed oligomers of cyanovirin-N show enhanced HIV neutralization.

Keeffe JR, Gnanapragasam PN, Gillespie SK, Yong J, Bjorkman PJ, Mayo SL.

Proc Natl Acad Sci U S A. 2011 Aug 23;108(34):14079-84. doi: 10.1073/pnas.1108777108. Epub 2011 Jul 28.

24.

Direct visualization reveals dynamics of a transient intermediate during protein assembly.

Zhang X, Lam VQ, Mou Y, Kimura T, Chung J, Chandrasekar S, Winkler JR, Mayo SL, Shan SO.

Proc Natl Acad Sci U S A. 2011 Apr 19;108(16):6450-5. doi: 10.1073/pnas.1019051108. Epub 2011 Apr 4.

25.

Nerve agent hydrolysis activity designed into a human drug metabolism enzyme.

Hemmert AC, Otto TC, Chica RA, Wierdl M, Edwards JS, Lewis SM, Edwards CC, Tsurkan L, Cadieux CL, Kasten SA, Cashman JR, Mayo SL, Potter PM, Cerasoli DM, Redinbo MR.

PLoS One. 2011 Mar 18;6(3):e17441. doi: 10.1371/journal.pone.0017441. Erratum in: PLoS One. 2012;7(1). doi:10.1371/annotation/c5953f27-95f8-4a1b-a46c-639d90e182ac. Lewis, Steven L [corrected to Lewis, Steven M].

26.

Generation of longer emission wavelength red fluorescent proteins using computationally designed libraries.

Chica RA, Moore MM, Allen BD, Mayo SL.

Proc Natl Acad Sci U S A. 2010 Nov 23;107(47):20257-62. doi: 10.1073/pnas.1013910107. Epub 2010 Nov 8.

27.

Experimental library screening demonstrates the successful application of computational protein design to large structural ensembles.

Allen BD, Nisthal A, Mayo SL.

Proc Natl Acad Sci U S A. 2010 Nov 16;107(46):19838-43. doi: 10.1073/pnas.1012985107. Epub 2010 Nov 2.

28.

An efficient algorithm for multistate protein design based on FASTER.

Allen BD, Mayo SL.

J Comput Chem. 2010 Apr 15;31(5):904-16. doi: 10.1002/jcc.21375.

PMID:
19637210
29.

The development of depth perception from motion parallax in infancy.

Nawrot E, Mayo SL, Nawrot M.

Atten Percept Psychophys. 2009 Jan;71(1):194-9. doi: 10.3758/APP.71.1.194.

PMID:
19304609
30.

Evaluating and optimizing computational protein design force fields using fixed composition-based negative design.

Alvizo O, Mayo SL.

Proc Natl Acad Sci U S A. 2008 Aug 26;105(34):12242-7. doi: 10.1073/pnas.0805858105. Epub 2008 Aug 15.

31.

NMR-detected conformational exchange observed in a computationally designed variant of protein Gbeta1.

Crowhurst KA, Mayo SL.

Protein Eng Des Sel. 2008 Sep;21(9):577-87. doi: 10.1093/protein/gzn035. Epub 2008 Jun 26.

PMID:
18586670
32.

An improved pairwise decomposable finite-difference Poisson-Boltzmann method for computational protein design.

Vizcarra CL, Zhang N, Marshall SA, Wingreen NS, Zeng C, Mayo SL.

J Comput Chem. 2008 May;29(7):1153-62.

PMID:
18074340
33.

A de novo designed protein protein interface.

Huang PS, Love JJ, Mayo SL.

Protein Sci. 2007 Dec;16(12):2770-4.

34.

Full-sequence computational design and solution structure of a thermostable protein variant.

Shah PS, Hom GK, Ross SA, Lassila JK, Crowhurst KA, Mayo SL.

J Mol Biol. 2007 Sep 7;372(1):1-6. Epub 2007 Jun 16. Review.

PMID:
17628593
37.

Establishing the entatic state in folding metallated Pseudomonas aeruginosa azurin.

Zong C, Wilson CJ, Shen T, Wittung-Stafshede P, Mayo SL, Wolynes PG.

Proc Natl Acad Sci U S A. 2007 Feb 27;104(9):3159-64. Epub 2007 Feb 14.

38.

Computational protein design promises to revolutionize protein engineering.

Alvizo O, Allen BD, Mayo SL.

Biotechniques. 2007 Jan;42(1):31, 33, 35 passim.

39.

Computationally designed libraries of fluorescent proteins evaluated by preservation and diversity of function.

Treynor TP, Vizcarra CL, Nedelcu D, Mayo SL.

Proc Natl Acad Sci U S A. 2007 Jan 2;104(1):48-53. Epub 2006 Dec 19.

40.

Blue fluorescent proteins with enhanced brightness and photostability from a structurally targeted library.

Mena MA, Treynor TP, Mayo SL, Daugherty PS.

Nat Biotechnol. 2006 Dec;24(12):1569-71. Epub 2006 Nov 19.

PMID:
17115054
41.

Combinatorial methods for small-molecule placement in computational enzyme design.

Lassila JK, Privett HK, Allen BD, Mayo SL.

Proc Natl Acad Sci U S A. 2006 Nov 7;103(45):16710-5. Epub 2006 Oct 30.

42.

Ca2+/calmodulin-dependent protein kinase II (CaMKII) is activated by calmodulin with two bound calciums.

Shifman JM, Choi MH, Mihalas S, Mayo SL, Kennedy MB.

Proc Natl Acad Sci U S A. 2006 Sep 19;103(38):13968-73. Epub 2006 Sep 11.

43.

Simple electrostatic model improves designed protein sequences.

Zollars ES, Marshall SA, Mayo SL.

Protein Sci. 2006 Aug;15(8):2014-8. Epub 2006 Jul 5.

44.

Dramatic performance enhancements for the FASTER optimization algorithm.

Allen BD, Mayo SL.

J Comput Chem. 2006 Jul 30;27(10):1071-5.

PMID:
16685715
45.

Generation and analysis of proline mutants in protein G.

Choi EJ, Mayo SL.

Protein Eng Des Sel. 2006 Jun;19(6):285-9. Epub 2006 Mar 20.

PMID:
16549401
46.

A search algorithm for fixed-composition protein design.

Hom GK, Mayo SL.

J Comput Chem. 2006 Feb;27(3):375-8.

PMID:
16380943
47.

Electrostatics in computational protein design.

Vizcarra CL, Mayo SL.

Curr Opin Chem Biol. 2005 Dec;9(6):622-6. Epub 2005 Oct 28. Review.

PMID:
16257567
48.

Adaptation of a fast Fourier transform-based docking algorithm for protein design.

Huang PS, Love JJ, Mayo SL.

J Comput Chem. 2005 Sep;26(12):1222-32.

PMID:
15962277
49.
50.

Computationally designed variants of Escherichia coli chorismate mutase show altered catalytic activity.

Lassila JK, Keeffe JR, Oelschlaeger P, Mayo SL.

Protein Eng Des Sel. 2005 Apr;18(4):161-3. Epub 2005 Apr 8.

PMID:
15820980

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