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Items: 1 to 50 of 141

1.

Computational aspects underlying genome to phenome analysis in plants.

Bolger AM, Poorter H, Dumschott K, Bolger ME, Arend D, Osorio S, Gundlach H, Mayer KFX, Lange M, Scholz U, Usadel B.

Plant J. 2019 Jan;97(1):182-198. doi: 10.1111/tpj.14179.

PMID:
30500991
2.

A promiscuous beta-glucosidase is involved in benzoxazinoid deglycosylation in Lamium galeobdolon.

Hannemann L, Lucaciu CR, Sharma S, Rattei T, Mayer KFX, Gierl A, Frey M.

Phytochemistry. 2018 Dec;156:224-233. doi: 10.1016/j.phytochem.2018.10.012. Epub 2018 Oct 15.

3.

Understanding the Molecular Basis of Salt Sequestration in Epidermal Bladder Cells of Chenopodium quinoa.

Böhm J, Messerer M, Müller HM, Scholz-Starke J, Gradogna A, Scherzer S, Maierhofer T, Bazihizina N, Zhang H, Stigloher C, Ache P, Al-Rasheid KAS, Mayer KFX, Shabala S, Carpaneto A, Haberer G, Zhu JK, Hedrich R.

Curr Biol. 2018 Oct 8;28(19):3075-3085.e7. doi: 10.1016/j.cub.2018.08.004. Epub 2018 Sep 20.

PMID:
30245105
4.

Genome mapping of seed-borne allergens and immunoresponsive proteins in wheat.

Juhász A, Belova T, Florides CG, Maulis C, Fischer I, Gell G, Birinyi Z, Ong J, Keeble-Gagnère G, Maharajan A, Ma W, Gibson P, Jia J, Lang D, Mayer KFX, Spannagl M; International Wheat Genome Sequencing Consortium, Tye-Din JA, Appels R, Olsen OA.

Sci Adv. 2018 Aug 17;4(8):eaar8602. doi: 10.1126/sciadv.aar8602. eCollection 2018 Aug.

5.

Shifting the limits in wheat research and breeding using a fully annotated reference genome.

International Wheat Genome Sequencing Consortium (IWGSC); IWGSC RefSeq principal investigators:, Appels R, Eversole K, Feuillet C, Keller B, Rogers J, Stein N; IWGSC whole-genome assembly principal investigators:, Pozniak CJ, Stein N, Choulet F, Distelfeld A, Eversole K, Poland J, Rogers J, Ronen G, Sharpe AG; Whole-genome sequencing and assembly:, Pozniak C, Ronen G, Stein N, Barad O, Baruch K, Choulet F, Keeble-Gagnère G, Mascher M, Sharpe AG, Ben-Zvi G, Josselin AA; Hi-C data-based scaffolding:, Stein N, Mascher M, Himmelbach A; Whole-genome assembly quality control and analyses:, Choulet F, Keeble-Gagnère G, Mascher M, Rogers J, Balfourier F, Gutierrez-Gonzalez J, Hayden M, Josselin AA, Koh C, Muehlbauer G, Pasam RK, Paux E, Pozniak CJ, Rigault P, Sharpe AG, Tibbits J, Tiwari V; Pseudomolecule assembly:, Choulet F, Keeble-Gagnère G, Mascher M, Josselin AA, Rogers J; RefSeq genome structure and gene analyses:, Spannagl M, Choulet F, Lang D, Gundlach H, Haberer G, Keeble-Gagnère G, Mayer KFX, Ormanbekova D, Paux E, Prade V, Šimková H, Wicker T; Automated annotation:, Choulet F, Spannagl M, Swarbreck D, Rimbert H, Felder M, Guilhot N, Gundlach H, Haberer G, Kaithakottil G, Keilwagen J, Lang D, Leroy P, Lux T, Mayer KFX, Twardziok S, Venturini L; Manual gene curation:, Appels R, Rimbert H, Choulet F, Juhász A, Keeble-Gagnère G; Subgenome comparative analyses:, Choulet F, Spannagl M, Lang D, Abrouk M, Haberer G, Keeble-Gagnère G, Mayer KFX, Wicker T; Transposable elements:, Choulet F, Wicker T, Gundlach H, Lang D, Spannagl M; Phylogenomic analyses:, Lang D, Spannagl M, Appels R, Fischer I; Transcriptome analyses and RNA-seq data:, Uauy C, Borrill P, Ramirez-Gonzalez RH, Appels R, Arnaud D, Chalabi S, Chalhoub B, Choulet F, Cory A, Datla R, Davey MW, Hayden M, Jacobs J, Lang D, Robinson SJ, Spannagl M, Steuernagel B, Tibbits J, Tiwari V, van Ex F, Wulff BBH; Whole-genome methylome:, Pozniak CJ, Robinson SJ, Sharpe AG, Cory A; Histone mark analyses:, Benhamed M, Paux E, Bendahmane A, Concia L, Latrasse D; BAC chromosome MTP IWGSC–Bayer Whole-Genome Profiling (WGP) tags:, Rogers J, Jacobs J, Alaux M, Appels R, Bartoš J, Bellec A, Berges H, Doležel J, Feuillet C, Frenkel Z, Gill B, Korol A, Letellier T, Olsen OA, Šimková H, Singh K, Valárik M, van der Vossen E, Vautrin S, Weining S; Chromosome LTC mapping and physical mapping quality control:, Korol A, Frenkel Z, Fahima T, Glikson V, Raats D, Rogers J; RH mapping:, Tiwari V, Gill B, Paux E, Poland J; Optical mapping:, Doležel J, Číhalíková J, Šimková H, Toegelová H, Vrána J; Recombination analyses:, Sourdille P, Darrier B; Gene family analyses:, Appels R, Spannagl M, Lang D, Fischer I, Ormanbekova D, Prade V; CBF gene family:, Barabaschi D, Cattivelli L; Dehydrin gene family:, Hernandez P, Galvez S, Budak H; NLR gene family:, Steuernagel B, Jones JDG, Witek K, Wulff BBH, Yu G; PPR gene family:, Small I, Melonek J, Zhou R; Prolamin gene family:, Juhász A, Belova T, Appels R, Olsen OA; WAK gene family:, Kanyuka K, King R; Stem solidness (SSt1) QTL team:, Nilsen K, Walkowiak S, Pozniak CJ, Cuthbert R, Datla R, Knox R, Wiebe K, Xiang D; Flowering locus C (FLC) gene team:, Rohde A, Golds T; Genome size analysis:, Doležel J, Čížková J, Tibbits J; MicroRNA and tRNA annotation:, Budak H, Akpinar BA, Biyiklioglu S; Genetic maps and mapping:, Muehlbauer G, Poland J, Gao L, Gutierrez-Gonzalez J, N'Daiye A; BAC libraries and chromosome sorting:, Doležel J, Šimková H, Číhalíková J, Kubaláková M, Šafář J, Vrána J; BAC pooling, BAC library repository, and access:, Berges H, Bellec A, Vautrin S; IWGSC sequence and data repository and access:, Alaux M, Alfama F, Adam-Blondon AF, Flores R, Guerche C, Letellier T, Loaec M, Quesneville H; Physical maps and BAC-based sequences:; 1A BAC sequencing and assembly:, Pozniak CJ, Sharpe AG, Walkowiak S, Budak H, Condie J, Ens J, Koh C, Maclachlan R, Tan Y, Wicker T; 1B BAC sequencing and assembly:, Choulet F, Paux E, Alberti A, Aury JM, Balfourier F, Barbe V, Couloux A, Cruaud C, Labadie K, Mangenot S, Wincker P; 1D, 4D, and 6D physical mapping:, Gill B, Kaur G, Luo M, Sehgal S; 2AL physical mapping:, Singh K, Chhuneja P, Gupta OP, Jindal S, Kaur P, Malik P, Sharma P, Yadav B; 2AS physical mapping:, Singh NK, Khurana J, Chaudhary C, Khurana P, Kumar V, Mahato A, Mathur S, Sevanthi A, Sharma N, Tomar RS; 2B, 2D, 4B, 5BL, and 5DL IWGSC–Bayer Whole-Genome Profiling (WGP) physical maps:, Rogers J, Jacobs J, Alaux M, Bellec A, Berges H, Doležel J, Feuillet C, Frenkel Z, Gill B, Korol A, van der Vossen E, Vautrin S; 3AL physical mapping:, Gill B, Kaur G, Luo M, Sehgal S; 3DS physical mapping and BAC sequencing and assembly:, Bartoš J, Holušová K, Plíhal O; 3DL BAC sequencing and assembly:, Clark MD, Heavens D, Kettleborough G, Wright J; 4A physical mapping, BAC sequencing, assembly, and annotation:, Valárik M, Abrouk M, Balcárková B, Holušová K, Hu Y, Luo M; 5BS BAC sequencing and assembly:, Salina E, Ravin N, Skryabin K, Beletsky A, Kadnikov V, Mardanov A, Nesterov M, Rakitin A, Sergeeva E; 6B BAC sequencing and assembly:, Handa H, Kanamori H, Katagiri S, Kobayashi F, Nasuda S, Tanaka T, Wu J; 7A physical mapping and BAC sequencing:, Appels R, Hayden M, Keeble-Gagnère G, Rigault P, Tibbits J; 7B physical mapping, BAC sequencing, and assembly:, Olsen OA, Belova T, Cattonaro F, Jiumeng M, Kugler K, Mayer KFX, Pfeifer M, Sandve S, Xun X, Zhan B; 7DS BAC sequencing and assembly:, Šimková H, Abrouk M, Batley J, Bayer PE, Edwards D, Hayashi S, Toegelová H, Tulpová Z, Visendi P; 7DL physical mapping and BAC sequencing:, Weining S, Cui L, Du X, Feng K, Nie X, Tong W, Wang L; Figures:, Borrill P, Gundlach H, Galvez S, Kaithakottil G, Lang D, Lux T, Mascher M, Ormanbekova D, Prade V, Ramirez-Gonzalez RH, Spannagl M, Stein N, Uauy C, Venturini L; Manuscript writing team:, Stein N, Appels R, Eversole K, Rogers J, Borrill P, Cattivelli L, Choulet F, Hernandez P, Kanyuka K, Lang D, Mascher M, Nilsen K, Paux E, Pozniak CJ, Ramirez-Gonzalez RH, Šimková H, Small I, Spannagl M, Swarbreck D, Uauy C.

Science. 2018 Aug 17;361(6403). pii: eaar7191. doi: 10.1126/science.aar7191. Epub 2018 Aug 16.

PMID:
30115783
6.

The transcriptional landscape of polyploid wheat.

Ramírez-González RH, Borrill P, Lang D, Harrington SA, Brinton J, Venturini L, Davey M, Jacobs J, van Ex F, Pasha A, Khedikar Y, Robinson SJ, Cory AT, Florio T, Concia L, Juery C, Schoonbeek H, Steuernagel B, Xiang D, Ridout CJ, Chalhoub B, Mayer KFX, Benhamed M, Latrasse D, Bendahmane A; International Wheat Genome Sequencing Consortium, Wulff BBH, Appels R, Tiwari V, Datla R, Choulet F, Pozniak CJ, Provart NJ, Sharpe AG, Paux E, Spannagl M, Bräutigam A, Uauy C.

Science. 2018 Aug 17;361(6403). pii: eaar6089. doi: 10.1126/science.aar6089.

PMID:
30115782
7.

Impact of transposable elements on genome structure and evolution in bread wheat.

Wicker T, Gundlach H, Spannagl M, Uauy C, Borrill P, Ramírez-González RH, De Oliveira R; International Wheat Genome Sequencing Consortium, Mayer KFX, Paux E, Choulet F.

Genome Biol. 2018 Aug 17;19(1):103. doi: 10.1186/s13059-018-1479-0.

8.

Chromosome-scale comparative sequence analysis unravels molecular mechanisms of genome dynamics between two wheat cultivars.

Thind AK, Wicker T, Müller T, Ackermann PM, Steuernagel B, Wulff BBH, Spannagl M, Twardziok SO, Felder M, Lux T, Mayer KFX; International Wheat Genome Sequencing Consortium, Keller B, Krattinger SG.

Genome Biol. 2018 Aug 17;19(1):104. doi: 10.1186/s13059-018-1477-2.

9.

Hidden variation in polyploid wheat drives local adaptation.

Gardiner LJ, Joynson R, Omony J, Rusholme-Pilcher R, Olohan L, Lang D, Bai C, Hawkesford M, Salt D, Spannagl M, Mayer KFX, Kenny J, Bevan M, Hall N, Hall A.

Genome Res. 2018 Sep;28(9):1319-1332. doi: 10.1101/gr.233551.117. Epub 2018 Aug 9.

10.

Footprints of parasitism in the genome of the parasitic flowering plant Cuscuta campestris.

Vogel A, Schwacke R, Denton AK, Usadel B, Hollmann J, Fischer K, Bolger A, Schmidt MH, Bolger ME, Gundlach H, Mayer KFX, Weiss-Schneeweiss H, Temsch EM, Krause K.

Nat Commun. 2018 Jun 28;9(1):2515. doi: 10.1038/s41467-018-04344-z.

11.

Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis.

Griesmann M, Chang Y, Liu X, Song Y, Haberer G, Crook MB, Billault-Penneteau B, Lauressergues D, Keller J, Imanishi L, Roswanjaya YP, Kohlen W, Pujic P, Battenberg K, Alloisio N, Liang Y, Hilhorst H, Salgado MG, Hocher V, Gherbi H, Svistoonoff S, Doyle JJ, He S, Xu Y, Xu S, Qu J, Gao Q, Fang X, Fu Y, Normand P, Berry AM, Wall LG, Ané JM, Pawlowski K, Xu X, Yang H, Spannagl M, Mayer KFX, Wong GK, Parniske M, Delaux PM, Cheng S.

Science. 2018 Jul 13;361(6398). pii: eaat1743. doi: 10.1126/science.aat1743. Epub 2018 May 24.

PMID:
29794220
12.

The repetitive landscape of the 5100 Mbp barley genome.

Wicker T, Schulman AH, Tanskanen J, Spannagl M, Twardziok S, Mascher M, Springer NM, Li Q, Waugh R, Li C, Zhang G, Stein N, Mayer KFX, Gundlach H.

Mob DNA. 2017 Dec 20;8:22. doi: 10.1186/s13100-017-0102-3. eCollection 2017.

13.

The Physcomitrella patens chromosome-scale assembly reveals moss genome structure and evolution.

Lang D, Ullrich KK, Murat F, Fuchs J, Jenkins J, Haas FB, Piednoel M, Gundlach H, Van Bel M, Meyberg R, Vives C, Morata J, Symeonidi A, Hiss M, Muchero W, Kamisugi Y, Saleh O, Blanc G, Decker EL, van Gessel N, Grimwood J, Hayes RD, Graham SW, Gunter LE, McDaniel SF, Hoernstein SNW, Larsson A, Li FW, Perroud PF, Phillips J, Ranjan P, Rokshar DS, Rothfels CJ, Schneider L, Shu S, Stevenson DW, Thümmler F, Tillich M, Villarreal Aguilar JC, Widiez T, Wong GK, Wymore A, Zhang Y, Zimmer AD, Quatrano RS, Mayer KFX, Goodstein D, Casacuberta JM, Vandepoele K, Reski R, Cuming AC, Tuskan GA, Maumus F, Salse J, Schmutz J, Rensing SA.

Plant J. 2018 Feb;93(3):515-533. doi: 10.1111/tpj.13801.

14.

The pseudogenes of barley.

Prade VM, Gundlach H, Twardziok S, Chapman B, Tan C, Langridge P, Schulman AH, Stein N, Waugh R, Zhang G, Platzer M, Li C, Spannagl M, Mayer KFX.

Plant J. 2018 Feb;93(3):502-514. doi: 10.1111/tpj.13794. Epub 2018 Jan 7.

15.

Genome sequence of the progenitor of the wheat D genome Aegilops tauschii.

Luo MC, Gu YQ, Puiu D, Wang H, Twardziok SO, Deal KR, Huo N, Zhu T, Wang L, Wang Y, McGuire PE, Liu S, Long H, Ramasamy RK, Rodriguez JC, Van SL, Yuan L, Wang Z, Xia Z, Xiao L, Anderson OD, Ouyang S, Liang Y, Zimin AV, Pertea G, Qi P, Bennetzen JL, Dai X, Dawson MW, Müller HG, Kugler K, Rivarola-Duarte L, Spannagl M, Mayer KFX, Lu FH, Bevan MW, Leroy P, Li P, You FM, Sun Q, Liu Z, Lyons E, Wicker T, Salzberg SL, Devos KM, Dvořák J.

Nature. 2017 Nov 23;551(7681):498-502. doi: 10.1038/nature24486. Epub 2017 Nov 15.

PMID:
29143815
16.

Light and Plastid Signals Regulate Different Sets of Genes in the Albino Mutant Pap7-1.

Grübler B, Merendino L, Twardziok SO, Mininno M, Allorent G, Chevalier F, Liebers M, Blanvillain R, Mayer KFX, Lerbs-Mache S, Ravanel S, Pfannschmidt T.

Plant Physiol. 2017 Nov;175(3):1203-1219. doi: 10.1104/pp.17.00982. Epub 2017 Sep 21.

17.

Bioinformatics in the plant genomic and phenomic domain: The German contribution to resources, services and perspectives.

Schmutzer T, Bolger ME, Rudd S, Chen J, Gundlach H, Arend D, Oppermann M, Weise S, Lange M, Spannagl M, Usadel B, Mayer KFX, Scholz U.

J Biotechnol. 2017 Nov 10;261:37-45. doi: 10.1016/j.jbiotec.2017.07.006. Epub 2017 Jul 8. Review.

18.

Wild emmer genome architecture and diversity elucidate wheat evolution and domestication.

Avni R, Nave M, Barad O, Baruch K, Twardziok SO, Gundlach H, Hale I, Mascher M, Spannagl M, Wiebe K, Jordan KW, Golan G, Deek J, Ben-Zvi B, Ben-Zvi G, Himmelbach A, MacLachlan RP, Sharpe AG, Fritz A, Ben-David R, Budak H, Fahima T, Korol A, Faris JD, Hernandez A, Mikel MA, Levy AA, Steffenson B, Maccaferri M, Tuberosa R, Cattivelli L, Faccioli P, Ceriotti A, Kashkush K, Pourkheirandish M, Komatsuda T, Eilam T, Sela H, Sharon A, Ohad N, Chamovitz DA, Mayer KFX, Stein N, Ronen G, Peleg Z, Pozniak CJ, Akhunov ED, Distelfeld A.

Science. 2017 Jul 7;357(6346):93-97. doi: 10.1126/science.aan0032.

PMID:
28684525
19.

A chromosome conformation capture ordered sequence of the barley genome.

Mascher M, Gundlach H, Himmelbach A, Beier S, Twardziok SO, Wicker T, Radchuk V, Dockter C, Hedley PE, Russell J, Bayer M, Ramsay L, Liu H, Haberer G, Zhang XQ, Zhang Q, Barrero RA, Li L, Taudien S, Groth M, Felder M, Hastie A, Šimková H, Staňková H, Vrána J, Chan S, Muñoz-Amatriaín M, Ounit R, Wanamaker S, Bolser D, Colmsee C, Schmutzer T, Aliyeva-Schnorr L, Grasso S, Tanskanen J, Chailyan A, Sampath D, Heavens D, Clissold L, Cao S, Chapman B, Dai F, Han Y, Li H, Li X, Lin C, McCooke JK, Tan C, Wang P, Wang S, Yin S, Zhou G, Poland JA, Bellgard MI, Borisjuk L, Houben A, Doležel J, Ayling S, Lonardi S, Kersey P, Langridge P, Muehlbauer GJ, Clark MD, Caccamo M, Schulman AH, Mayer KFX, Platzer M, Close TJ, Scholz U, Hansson M, Zhang G, Braumann I, Spannagl M, Li C, Waugh R, Stein N.

Nature. 2017 Apr 26;544(7651):427-433. doi: 10.1038/nature22043.

PMID:
28447635
20.

Time-course expression QTL-atlas of the global transcriptional response of wheat to Fusarium graminearum.

Samad-Zamini M, Schweiger W, Nussbaumer T, Mayer KFX, Buerstmayr H.

Plant Biotechnol J. 2017 Nov;15(11):1453-1464. doi: 10.1111/pbi.12729. Epub 2017 Apr 21.

21.

Natural haplotypes of FLM non-coding sequences fine-tune flowering time in ambient spring temperatures in Arabidopsis.

Lutz U, Nussbaumer T, Spannagl M, Diener J, Mayer KF, Schwechheimer C.

Elife. 2017 Mar 15;6. pii: e22114. doi: 10.7554/eLife.22114.

22.

Systemic Responses of Barley to the 3-hydroxy-decanoyl-homoserine Lactone Producing Plant Beneficial Endophyte Acidovorax radicis N35.

Han S, Li D, Trost E, Mayer KF, Vlot AC, Heller W, Schmid M, Hartmann A, Rothballer M.

Front Plant Sci. 2016 Dec 12;7:1868. doi: 10.3389/fpls.2016.01868. eCollection 2016.

23.

PGSB/MIPS PlantsDB Database Framework for the Integration and Analysis of Plant Genome Data.

Spannagl M, Nussbaumer T, Bader K, Gundlach H, Mayer KF.

Methods Mol Biol. 2017;1533:33-44.

PMID:
27987163
24.

transPLANT Resources for Triticeae Genomic Data.

Spannagl M, Alaux M, Lange M, Bolser DM, Bader KC, Letellier T, Kimmel E, Flores R, Pommier C, Kerhornou A, Walts B, Nussbaumer T, Grabmuller C, Chen J, Colmsee C, Beier S, Mascher M, Schmutzer T, Arend D, Thanki A, Ramirez-Gonzalez R, Ayling M, Ayling S, Caccamo M, Mayer KF, Scholz U, Steinbach D, Quesneville H, Kersey PJ.

Plant Genome. 2016 Mar;9(1). doi: 10.3835/plantgenome2015.06.0038. Review.

25.

Examining the Transcriptional Response in Wheat Near-Isogenic Lines to Infection and Deoxynivalenol Treatment.

Hofstad AN, Nussbaumer T, Akhunov E, Shin S, Kugler KG, Kistler HC, Mayer KF, Muehlbauer GJ.

Plant Genome. 2016 Mar;9(1). doi: 10.3835/plantgenome2015.05.0032.

26.

Towards a whole-genome sequence for rye (Secale cereale L.).

Bauer E, Schmutzer T, Barilar I, Mascher M, Gundlach H, Martis MM, Twardziok SO, Hackauf B, Gordillo A, Wilde P, Schmidt M, Korzun V, Mayer KF, Schmid K, Schön CC, Scholz U.

Plant J. 2017 Mar;89(5):853-869. doi: 10.1111/tpj.13436. Epub 2017 Feb 8.

27.

The Cardamine hirsuta genome offers insight into the evolution of morphological diversity.

Gan X, Hay A, Kwantes M, Haberer G, Hallab A, Ioio RD, Hofhuis H, Pieper B, Cartolano M, Neumann U, Nikolov LA, Song B, Hajheidari M, Briskine R, Kougioumoutzi E, Vlad D, Broholm S, Hein J, Meksem K, Lightfoot D, Shimizu KK, Shimizu-Inatsugi R, Imprialou M, Kudrna D, Wing R, Sato S, Huijser P, Filatov D, Mayer KF, Mott R, Tsiantis M.

Nat Plants. 2016 Oct 31;2(11):16167. doi: 10.1038/nplants.2016.167. Erratum in: Nat Plants. 2016 Nov 07;2:16189.

PMID:
27797353
28.

Brassinosteroids participate in the control of basal and acquired freezing tolerance of plants.

Eremina M, Unterholzner SJ, Rathnayake AI, Castellanos M, Khan M, Kugler KG, May ST, Mayer KF, Rozhon W, Poppenberger B.

Proc Natl Acad Sci U S A. 2016 Oct 4;113(40):E5982-E5991. Epub 2016 Sep 21. Erratum in: Proc Natl Acad Sci U S A. 2017 Feb 7;114(6):E1038-E1039.

29.

DNA transposon activity is associated with increased mutation rates in genes of rice and other grasses.

Wicker T, Yu Y, Haberer G, Mayer KF, Marri PR, Rounsley S, Chen M, Zuccolo A, Panaud O, Wing RA, Roffler S.

Nat Commun. 2016 Sep 7;7:12790. doi: 10.1038/ncomms12790.

30.

A comprehensive study of the genomic differentiation between temperate Dent and Flint maize.

Unterseer S, Pophaly SD, Peis R, Westermeier P, Mayer M, Seidel MA, Haberer G, Mayer KF, Ordas B, Pausch H, Tellier A, Bauer E, Schön CC.

Genome Biol. 2016 Jul 8;17(1):137. doi: 10.1186/s13059-016-1009-x.

31.

Suppressed recombination and unique candidate genes in the divergent haplotype encoding Fhb1, a major Fusarium head blight resistance locus in wheat.

Schweiger W, Steiner B, Vautrin S, Nussbaumer T, Siegwart G, Zamini M, Jungreithmeier F, Gratl V, Lemmens M, Mayer KF, Bérgès H, Adam G, Buerstmayr H.

Theor Appl Genet. 2016 Aug;129(8):1607-23. doi: 10.1007/s00122-016-2727-x. Epub 2016 May 12.

32.

The big five of the monocot genomes.

Haberer G, Mayer KF, Spannagl M.

Curr Opin Plant Biol. 2016 Apr;30:33-40. doi: 10.1016/j.pbi.2016.01.004. Epub 2016 Feb 8. Review.

PMID:
26866569
33.

Multiplex sequencing of bacterial artificial chromosomes for assembling complex plant genomes.

Beier S, Himmelbach A, Schmutzer T, Felder M, Taudien S, Mayer KF, Platzer M, Stein N, Scholz U, Mascher M.

Plant Biotechnol J. 2016 Jul;14(7):1511-22. doi: 10.1111/pbi.12511. Epub 2016 Jan 23.

34.

Identification and Characterization of Carboxylesterases from Brachypodium distachyon Deacetylating Trichothecene Mycotoxins.

Schmeitzl C, Varga E, Warth B, Kugler KG, Malachová A, Michlmayr H, Wiesenberger G, Mayer KF, Mewes HW, Krska R, Schuhmacher R, Berthiller F, Adam G.

Toxins (Basel). 2015 Dec 25;8(1). pii: E6. doi: 10.3390/toxins8010006.

35.

Red clover (Trifolium pratense L.) draft genome provides a platform for trait improvement.

De Vega JJ, Ayling S, Hegarty M, Kudrna D, Goicoechea JL, Ergon Å, Rognli OA, Jones C, Swain M, Geurts R, Lang C, Mayer KF, Rössner S, Yates S, Webb KJ, Donnison IS, Oldroyd GE, Wing RA, Caccamo M, Powell W, Abberton MT, Skøt L.

Sci Rep. 2015 Nov 30;5:17394. doi: 10.1038/srep17394.

36.

Parallel Selection Revealed by Population Sequencing in Chicken.

Qanbari S, Seidel M, Strom TM, Mayer KF, Preisinger R, Simianer H.

Genome Biol Evol. 2015 Nov 13;7(12):3299-306. doi: 10.1093/gbe/evv222.

37.

PGSB PlantsDB: updates to the database framework for comparative plant genome research.

Spannagl M, Nussbaumer T, Bader KC, Martis MM, Seidel M, Kugler KG, Gundlach H, Mayer KF.

Nucleic Acids Res. 2016 Jan 4;44(D1):D1141-7. doi: 10.1093/nar/gkv1130. Epub 2015 Nov 2.

38.

PGSB/MIPS Plant Genome Information Resources and Concepts for the Analysis of Complex Grass Genomes.

Spannagl M, Bader K, Pfeifer M, Nussbaumer T, Mayer KF.

Methods Mol Biol. 2016;1374:165-86. doi: 10.1007/978-1-4939-3167-5_8.

PMID:
26519405
39.

Modulation of Ambient Temperature-Dependent Flowering in Arabidopsis thaliana by Natural Variation of FLOWERING LOCUS M.

Lutz U, Posé D, Pfeifer M, Gundlach H, Hagmann J, Wang C, Weigel D, Mayer KF, Schmid M, Schwechheimer C.

PLoS Genet. 2015 Oct 22;11(10):e1005588. doi: 10.1371/journal.pgen.1005588. eCollection 2015 Oct.

40.

Joint Transcriptomic and Metabolomic Analyses Reveal Changes in the Primary Metabolism and Imbalances in the Subgenome Orchestration in the Bread Wheat Molecular Response to Fusarium graminearum.

Nussbaumer T, Warth B, Sharma S, Ametz C, Bueschl C, Parich A, Pfeifer M, Siegwart G, Steiner B, Lemmens M, Schuhmacher R, Buerstmayr H, Mayer KF, Kugler KG, Schweiger W.

G3 (Bethesda). 2015 Oct 4;5(12):2579-92. doi: 10.1534/g3.115.021550.

41.

Brassinosteroids Are Master Regulators of Gibberellin Biosynthesis in Arabidopsis.

Unterholzner SJ, Rozhon W, Papacek M, Ciomas J, Lange T, Kugler KG, Mayer KF, Sieberer T, Poppenberger B.

Plant Cell. 2015 Aug;27(8):2261-72. doi: 10.1105/tpc.15.00433. Epub 2015 Aug 4.

42.

Barley: From Brittle to Stable Harvest.

Haberer G, Mayer KF.

Cell. 2015 Jul 30;162(3):469-71. doi: 10.1016/j.cell.2015.07.023.

43.

DroughtDB: an expert-curated compilation of plant drought stress genes and their homologs in nine species.

Alter S, Bader KC, Spannagl M, Wang Y, Bauer E, Schön CC, Mayer KF.

Database (Oxford). 2015 May 15;2015:bav046. doi: 10.1093/database/bav046. Print 2015.

44.

A Genome-Wide Survey of Date Palm Cultivars Supports Two Major Subpopulations in Phoenix dactylifera.

Mathew LS, Seidel MA, George B, Mathew S, Spannagl M, Haberer G, Torres MF, Al-Dous EK, Al-Azwani EK, Diboun I, Krueger RR, Mayer KF, Mohamoud YA, Suhre K, Malek JA.

G3 (Bethesda). 2015 May 8;5(7):1429-38. doi: 10.1534/g3.115.018341.

45.

High-throughput physical map anchoring via BAC-pool sequencing.

Cviková K, Cattonaro F, Alaux M, Stein N, Mayer KF, Doležel J, Bartoš J.

BMC Plant Biol. 2015 Apr 11;15:99. doi: 10.1186/s12870-015-0429-1.

46.

Comparative transcriptome analysis within the Lolium/Festuca species complex reveals high sequence conservation.

Czaban A, Sharma S, Byrne SL, Spannagl M, Mayer KF, Asp T.

BMC Genomics. 2015 Mar 28;16:249. doi: 10.1186/s12864-015-1447-y.

47.

New insights into the wheat chromosome 4D structure and virtual gene order, revealed by survey pyrosequencing.

Helguera M, Rivarola M, Clavijo B, Martis MM, Vanzetti LS, González S, Garbus I, Leroy P, Šimková H, Valárik M, Caccamo M, Doležel J, Mayer KFX, Feuillet C, Tranquilli G, Paniego N, Echenique V.

Plant Sci. 2015 Apr;233:200-212. doi: 10.1016/j.plantsci.2014.12.004. Epub 2014 Dec 18.

48.

chromoWIZ: a web tool to query and visualize chromosome-anchored genes from cereal and model genomes.

Nussbaumer T, Kugler KG, Schweiger W, Bader KC, Gundlach H, Spannagl M, Poursarebani N, Pfeifer M, Mayer KF.

BMC Plant Biol. 2014 Dec 10;14:348. doi: 10.1186/s12870-014-0348-6.

49.

Genes on B chromosomes: old questions revisited with new tools.

Banaei-Moghaddam AM, Martis MM, Macas J, Gundlach H, Himmelbach A, Altschmied L, Mayer KF, Houben A.

Biochim Biophys Acta. 2015 Jan;1849(1):64-70. doi: 10.1016/j.bbagrm.2014.11.007. Epub 2014 Dec 3. Review.

PMID:
25481283
50.

Bacteria-triggered systemic immunity in barley is associated with WRKY and ETHYLENE RESPONSIVE FACTORs but not with salicylic acid.

Dey S, Wenig M, Langen G, Sharma S, Kugler KG, Knappe C, Hause B, Bichlmeier M, Babaeizad V, Imani J, Janzik I, Stempfl T, Hückelhoven R, Kogel KH, Mayer KF, Vlot AC.

Plant Physiol. 2014 Dec;166(4):2133-51. doi: 10.1104/pp.114.249276. Epub 2014 Oct 20.

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