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Items: 1 to 50 of 133

1.

Hidden variation in polyploid wheat drives local adaptation.

Gardiner LJ, Joynson R, Omony J, Rusholme-Pilcher R, Olohan L, Lang D, Bai C, Hawkesford M, Salt D, Spannagl M, Mayer KFX, Kenny J, Bevan M, Hall N, Hall A.

Genome Res. 2018 Aug 9. doi: 10.1101/gr.233551.117. [Epub ahead of print]

2.

Footprints of parasitism in the genome of the parasitic flowering plant Cuscuta campestris.

Vogel A, Schwacke R, Denton AK, Usadel B, Hollmann J, Fischer K, Bolger A, Schmidt MH, Bolger ME, Gundlach H, Mayer KFX, Weiss-Schneeweiss H, Temsch EM, Krause K.

Nat Commun. 2018 Jun 28;9(1):2515. doi: 10.1038/s41467-018-04344-z.

3.

Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis.

Griesmann M, Chang Y, Liu X, Song Y, Haberer G, Crook MB, Billault-Penneteau B, Lauressergues D, Keller J, Imanishi L, Roswanjaya YP, Kohlen W, Pujic P, Battenberg K, Alloisio N, Liang Y, Hilhorst H, Salgado MG, Hocher V, Gherbi H, Svistoonoff S, Doyle JJ, He S, Xu Y, Xu S, Qu J, Gao Q, Fang X, Fu Y, Normand P, Berry AM, Wall LG, Ané JM, Pawlowski K, Xu X, Yang H, Spannagl M, Mayer KFX, Wong GK, Parniske M, Delaux PM, Cheng S.

Science. 2018 Jul 13;361(6398). pii: eaat1743. doi: 10.1126/science.aat1743. Epub 2018 May 24.

PMID:
29794220
4.

The repetitive landscape of the 5100 Mbp barley genome.

Wicker T, Schulman AH, Tanskanen J, Spannagl M, Twardziok S, Mascher M, Springer NM, Li Q, Waugh R, Li C, Zhang G, Stein N, Mayer KFX, Gundlach H.

Mob DNA. 2017 Dec 20;8:22. doi: 10.1186/s13100-017-0102-3. eCollection 2017.

5.

The Physcomitrella patens chromosome-scale assembly reveals moss genome structure and evolution.

Lang D, Ullrich KK, Murat F, Fuchs J, Jenkins J, Haas FB, Piednoel M, Gundlach H, Van Bel M, Meyberg R, Vives C, Morata J, Symeonidi A, Hiss M, Muchero W, Kamisugi Y, Saleh O, Blanc G, Decker EL, van Gessel N, Grimwood J, Hayes RD, Graham SW, Gunter LE, McDaniel SF, Hoernstein SNW, Larsson A, Li FW, Perroud PF, Phillips J, Ranjan P, Rokshar DS, Rothfels CJ, Schneider L, Shu S, Stevenson DW, Thümmler F, Tillich M, Villarreal Aguilar JC, Widiez T, Wong GK, Wymore A, Zhang Y, Zimmer AD, Quatrano RS, Mayer KFX, Goodstein D, Casacuberta JM, Vandepoele K, Reski R, Cuming AC, Tuskan GA, Maumus F, Salse J, Schmutz J, Rensing SA.

Plant J. 2018 Feb;93(3):515-533. doi: 10.1111/tpj.13801.

PMID:
29237241
6.

The pseudogenes of barley.

Prade VM, Gundlach H, Twardziok S, Chapman B, Tan C, Langridge P, Schulman AH, Stein N, Waugh R, Zhang G, Platzer M, Li C, Spannagl M, Mayer KFX.

Plant J. 2018 Feb;93(3):502-514. doi: 10.1111/tpj.13794. Epub 2018 Jan 7.

PMID:
29205595
7.

Genome sequence of the progenitor of the wheat D genome Aegilops tauschii.

Luo MC, Gu YQ, Puiu D, Wang H, Twardziok SO, Deal KR, Huo N, Zhu T, Wang L, Wang Y, McGuire PE, Liu S, Long H, Ramasamy RK, Rodriguez JC, Van SL, Yuan L, Wang Z, Xia Z, Xiao L, Anderson OD, Ouyang S, Liang Y, Zimin AV, Pertea G, Qi P, Bennetzen JL, Dai X, Dawson MW, Müller HG, Kugler K, Rivarola-Duarte L, Spannagl M, Mayer KFX, Lu FH, Bevan MW, Leroy P, Li P, You FM, Sun Q, Liu Z, Lyons E, Wicker T, Salzberg SL, Devos KM, Dvořák J.

Nature. 2017 Nov 23;551(7681):498-502. doi: 10.1038/nature24486. Epub 2017 Nov 15.

PMID:
29143815
8.

Light and Plastid Signals Regulate Different Sets of Genes in the Albino Mutant Pap7-1.

Grübler B, Merendino L, Twardziok SO, Mininno M, Allorent G, Chevalier F, Liebers M, Blanvillain R, Mayer KFX, Lerbs-Mache S, Ravanel S, Pfannschmidt T.

Plant Physiol. 2017 Nov;175(3):1203-1219. doi: 10.1104/pp.17.00982. Epub 2017 Sep 21.

9.

Bioinformatics in the plant genomic and phenomic domain: The German contribution to resources, services and perspectives.

Schmutzer T, Bolger ME, Rudd S, Chen J, Gundlach H, Arend D, Oppermann M, Weise S, Lange M, Spannagl M, Usadel B, Mayer KFX, Scholz U.

J Biotechnol. 2017 Nov 10;261:37-45. doi: 10.1016/j.jbiotec.2017.07.006. Epub 2017 Jul 8. Review.

10.

Wild emmer genome architecture and diversity elucidate wheat evolution and domestication.

Avni R, Nave M, Barad O, Baruch K, Twardziok SO, Gundlach H, Hale I, Mascher M, Spannagl M, Wiebe K, Jordan KW, Golan G, Deek J, Ben-Zvi B, Ben-Zvi G, Himmelbach A, MacLachlan RP, Sharpe AG, Fritz A, Ben-David R, Budak H, Fahima T, Korol A, Faris JD, Hernandez A, Mikel MA, Levy AA, Steffenson B, Maccaferri M, Tuberosa R, Cattivelli L, Faccioli P, Ceriotti A, Kashkush K, Pourkheirandish M, Komatsuda T, Eilam T, Sela H, Sharon A, Ohad N, Chamovitz DA, Mayer KFX, Stein N, Ronen G, Peleg Z, Pozniak CJ, Akhunov ED, Distelfeld A.

Science. 2017 Jul 7;357(6346):93-97. doi: 10.1126/science.aan0032.

PMID:
28684525
11.

A chromosome conformation capture ordered sequence of the barley genome.

Mascher M, Gundlach H, Himmelbach A, Beier S, Twardziok SO, Wicker T, Radchuk V, Dockter C, Hedley PE, Russell J, Bayer M, Ramsay L, Liu H, Haberer G, Zhang XQ, Zhang Q, Barrero RA, Li L, Taudien S, Groth M, Felder M, Hastie A, Šimková H, Staňková H, Vrána J, Chan S, Muñoz-Amatriaín M, Ounit R, Wanamaker S, Bolser D, Colmsee C, Schmutzer T, Aliyeva-Schnorr L, Grasso S, Tanskanen J, Chailyan A, Sampath D, Heavens D, Clissold L, Cao S, Chapman B, Dai F, Han Y, Li H, Li X, Lin C, McCooke JK, Tan C, Wang P, Wang S, Yin S, Zhou G, Poland JA, Bellgard MI, Borisjuk L, Houben A, Doležel J, Ayling S, Lonardi S, Kersey P, Langridge P, Muehlbauer GJ, Clark MD, Caccamo M, Schulman AH, Mayer KFX, Platzer M, Close TJ, Scholz U, Hansson M, Zhang G, Braumann I, Spannagl M, Li C, Waugh R, Stein N.

Nature. 2017 Apr 26;544(7651):427-433. doi: 10.1038/nature22043.

PMID:
28447635
12.

Time-course expression QTL-atlas of the global transcriptional response of wheat to Fusarium graminearum.

Samad-Zamini M, Schweiger W, Nussbaumer T, Mayer KFX, Buerstmayr H.

Plant Biotechnol J. 2017 Nov;15(11):1453-1464. doi: 10.1111/pbi.12729. Epub 2017 Apr 21.

13.

Natural haplotypes of FLM non-coding sequences fine-tune flowering time in ambient spring temperatures in Arabidopsis.

Lutz U, Nussbaumer T, Spannagl M, Diener J, Mayer KF, Schwechheimer C.

Elife. 2017 Mar 15;6. pii: e22114. doi: 10.7554/eLife.22114.

14.

Systemic Responses of Barley to the 3-hydroxy-decanoyl-homoserine Lactone Producing Plant Beneficial Endophyte Acidovorax radicis N35.

Han S, Li D, Trost E, Mayer KF, Vlot AC, Heller W, Schmid M, Hartmann A, Rothballer M.

Front Plant Sci. 2016 Dec 12;7:1868. doi: 10.3389/fpls.2016.01868. eCollection 2016.

15.

PGSB/MIPS PlantsDB Database Framework for the Integration and Analysis of Plant Genome Data.

Spannagl M, Nussbaumer T, Bader K, Gundlach H, Mayer KF.

Methods Mol Biol. 2017;1533:33-44.

PMID:
27987163
16.

transPLANT Resources for Triticeae Genomic Data.

Spannagl M, Alaux M, Lange M, Bolser DM, Bader KC, Letellier T, Kimmel E, Flores R, Pommier C, Kerhornou A, Walts B, Nussbaumer T, Grabmuller C, Chen J, Colmsee C, Beier S, Mascher M, Schmutzer T, Arend D, Thanki A, Ramirez-Gonzalez R, Ayling M, Ayling S, Caccamo M, Mayer KF, Scholz U, Steinbach D, Quesneville H, Kersey PJ.

Plant Genome. 2016 Mar;9(1). doi: 10.3835/plantgenome2015.06.0038.

17.

Examining the Transcriptional Response in Wheat Near-Isogenic Lines to Infection and Deoxynivalenol Treatment.

Hofstad AN, Nussbaumer T, Akhunov E, Shin S, Kugler KG, Kistler HC, Mayer KF, Muehlbauer GJ.

Plant Genome. 2016 Mar;9(1). doi: 10.3835/plantgenome2015.05.0032.

18.

Towards a whole-genome sequence for rye (Secale cereale L.).

Bauer E, Schmutzer T, Barilar I, Mascher M, Gundlach H, Martis MM, Twardziok SO, Hackauf B, Gordillo A, Wilde P, Schmidt M, Korzun V, Mayer KF, Schmid K, Schön CC, Scholz U.

Plant J. 2017 Mar;89(5):853-869. doi: 10.1111/tpj.13436. Epub 2017 Feb 8.

19.

The Cardamine hirsuta genome offers insight into the evolution of morphological diversity.

Gan X, Hay A, Kwantes M, Haberer G, Hallab A, Ioio RD, Hofhuis H, Pieper B, Cartolano M, Neumann U, Nikolov LA, Song B, Hajheidari M, Briskine R, Kougioumoutzi E, Vlad D, Broholm S, Hein J, Meksem K, Lightfoot D, Shimizu KK, Shimizu-Inatsugi R, Imprialou M, Kudrna D, Wing R, Sato S, Huijser P, Filatov D, Mayer KF, Mott R, Tsiantis M.

Nat Plants. 2016 Oct 31;2(11):16167. doi: 10.1038/nplants.2016.167. Erratum in: Nat Plants. 2016 Nov 07;2:16189.

PMID:
27797353
20.

Brassinosteroids participate in the control of basal and acquired freezing tolerance of plants.

Eremina M, Unterholzner SJ, Rathnayake AI, Castellanos M, Khan M, Kugler KG, May ST, Mayer KF, Rozhon W, Poppenberger B.

Proc Natl Acad Sci U S A. 2016 Oct 4;113(40):E5982-E5991. Epub 2016 Sep 21. Erratum in: Proc Natl Acad Sci U S A. 2017 Feb 7;114(6):E1038-E1039.

21.

DNA transposon activity is associated with increased mutation rates in genes of rice and other grasses.

Wicker T, Yu Y, Haberer G, Mayer KF, Marri PR, Rounsley S, Chen M, Zuccolo A, Panaud O, Wing RA, Roffler S.

Nat Commun. 2016 Sep 7;7:12790. doi: 10.1038/ncomms12790.

22.

A comprehensive study of the genomic differentiation between temperate Dent and Flint maize.

Unterseer S, Pophaly SD, Peis R, Westermeier P, Mayer M, Seidel MA, Haberer G, Mayer KF, Ordas B, Pausch H, Tellier A, Bauer E, Schön CC.

Genome Biol. 2016 Jul 8;17(1):137. doi: 10.1186/s13059-016-1009-x.

23.

Suppressed recombination and unique candidate genes in the divergent haplotype encoding Fhb1, a major Fusarium head blight resistance locus in wheat.

Schweiger W, Steiner B, Vautrin S, Nussbaumer T, Siegwart G, Zamini M, Jungreithmeier F, Gratl V, Lemmens M, Mayer KF, Bérgès H, Adam G, Buerstmayr H.

Theor Appl Genet. 2016 Aug;129(8):1607-23. doi: 10.1007/s00122-016-2727-x. Epub 2016 May 12.

24.

The big five of the monocot genomes.

Haberer G, Mayer KF, Spannagl M.

Curr Opin Plant Biol. 2016 Apr;30:33-40. doi: 10.1016/j.pbi.2016.01.004. Epub 2016 Feb 8. Review.

PMID:
26866569
25.

Multiplex sequencing of bacterial artificial chromosomes for assembling complex plant genomes.

Beier S, Himmelbach A, Schmutzer T, Felder M, Taudien S, Mayer KF, Platzer M, Stein N, Scholz U, Mascher M.

Plant Biotechnol J. 2016 Jul;14(7):1511-22. doi: 10.1111/pbi.12511. Epub 2016 Jan 23.

26.

Identification and Characterization of Carboxylesterases from Brachypodium distachyon Deacetylating Trichothecene Mycotoxins.

Schmeitzl C, Varga E, Warth B, Kugler KG, Malachová A, Michlmayr H, Wiesenberger G, Mayer KF, Mewes HW, Krska R, Schuhmacher R, Berthiller F, Adam G.

Toxins (Basel). 2015 Dec 25;8(1). pii: E6. doi: 10.3390/toxins8010006.

27.

Red clover (Trifolium pratense L.) draft genome provides a platform for trait improvement.

De Vega JJ, Ayling S, Hegarty M, Kudrna D, Goicoechea JL, Ergon Å, Rognli OA, Jones C, Swain M, Geurts R, Lang C, Mayer KF, Rössner S, Yates S, Webb KJ, Donnison IS, Oldroyd GE, Wing RA, Caccamo M, Powell W, Abberton MT, Skøt L.

Sci Rep. 2015 Nov 30;5:17394. doi: 10.1038/srep17394.

28.

Parallel Selection Revealed by Population Sequencing in Chicken.

Qanbari S, Seidel M, Strom TM, Mayer KF, Preisinger R, Simianer H.

Genome Biol Evol. 2015 Nov 13;7(12):3299-306. doi: 10.1093/gbe/evv222.

29.

PGSB PlantsDB: updates to the database framework for comparative plant genome research.

Spannagl M, Nussbaumer T, Bader KC, Martis MM, Seidel M, Kugler KG, Gundlach H, Mayer KF.

Nucleic Acids Res. 2016 Jan 4;44(D1):D1141-7. doi: 10.1093/nar/gkv1130. Epub 2015 Nov 2.

30.

PGSB/MIPS Plant Genome Information Resources and Concepts for the Analysis of Complex Grass Genomes.

Spannagl M, Bader K, Pfeifer M, Nussbaumer T, Mayer KF.

Methods Mol Biol. 2016;1374:165-86. doi: 10.1007/978-1-4939-3167-5_8.

PMID:
26519405
31.

Modulation of Ambient Temperature-Dependent Flowering in Arabidopsis thaliana by Natural Variation of FLOWERING LOCUS M.

Lutz U, Posé D, Pfeifer M, Gundlach H, Hagmann J, Wang C, Weigel D, Mayer KF, Schmid M, Schwechheimer C.

PLoS Genet. 2015 Oct 22;11(10):e1005588. doi: 10.1371/journal.pgen.1005588. eCollection 2015 Oct.

32.

Joint Transcriptomic and Metabolomic Analyses Reveal Changes in the Primary Metabolism and Imbalances in the Subgenome Orchestration in the Bread Wheat Molecular Response to Fusarium graminearum.

Nussbaumer T, Warth B, Sharma S, Ametz C, Bueschl C, Parich A, Pfeifer M, Siegwart G, Steiner B, Lemmens M, Schuhmacher R, Buerstmayr H, Mayer KF, Kugler KG, Schweiger W.

G3 (Bethesda). 2015 Oct 4;5(12):2579-92. doi: 10.1534/g3.115.021550.

33.

Brassinosteroids Are Master Regulators of Gibberellin Biosynthesis in Arabidopsis.

Unterholzner SJ, Rozhon W, Papacek M, Ciomas J, Lange T, Kugler KG, Mayer KF, Sieberer T, Poppenberger B.

Plant Cell. 2015 Aug;27(8):2261-72. doi: 10.1105/tpc.15.00433. Epub 2015 Aug 4.

34.

Barley: From Brittle to Stable Harvest.

Haberer G, Mayer KF.

Cell. 2015 Jul 30;162(3):469-71. doi: 10.1016/j.cell.2015.07.023.

35.

DroughtDB: an expert-curated compilation of plant drought stress genes and their homologs in nine species.

Alter S, Bader KC, Spannagl M, Wang Y, Bauer E, Schön CC, Mayer KF.

Database (Oxford). 2015 May 15;2015:bav046. doi: 10.1093/database/bav046. Print 2015.

36.

A Genome-Wide Survey of Date Palm Cultivars Supports Two Major Subpopulations in Phoenix dactylifera.

Mathew LS, Seidel MA, George B, Mathew S, Spannagl M, Haberer G, Torres MF, Al-Dous EK, Al-Azwani EK, Diboun I, Krueger RR, Mayer KF, Mohamoud YA, Suhre K, Malek JA.

G3 (Bethesda). 2015 May 8;5(7):1429-38. doi: 10.1534/g3.115.018341.

37.

High-throughput physical map anchoring via BAC-pool sequencing.

Cviková K, Cattonaro F, Alaux M, Stein N, Mayer KF, Doležel J, Bartoš J.

BMC Plant Biol. 2015 Apr 11;15:99. doi: 10.1186/s12870-015-0429-1.

38.

Comparative transcriptome analysis within the Lolium/Festuca species complex reveals high sequence conservation.

Czaban A, Sharma S, Byrne SL, Spannagl M, Mayer KF, Asp T.

BMC Genomics. 2015 Mar 28;16:249. doi: 10.1186/s12864-015-1447-y.

39.

New insights into the wheat chromosome 4D structure and virtual gene order, revealed by survey pyrosequencing.

Helguera M, Rivarola M, Clavijo B, Martis MM, Vanzetti LS, González S, Garbus I, Leroy P, Šimková H, Valárik M, Caccamo M, Doležel J, Mayer KFX, Feuillet C, Tranquilli G, Paniego N, Echenique V.

Plant Sci. 2015 Apr;233:200-212. doi: 10.1016/j.plantsci.2014.12.004. Epub 2014 Dec 18.

40.

chromoWIZ: a web tool to query and visualize chromosome-anchored genes from cereal and model genomes.

Nussbaumer T, Kugler KG, Schweiger W, Bader KC, Gundlach H, Spannagl M, Poursarebani N, Pfeifer M, Mayer KF.

BMC Plant Biol. 2014 Dec 10;14:348. doi: 10.1186/s12870-014-0348-6.

41.

Genes on B chromosomes: old questions revisited with new tools.

Banaei-Moghaddam AM, Martis MM, Macas J, Gundlach H, Himmelbach A, Altschmied L, Mayer KF, Houben A.

Biochim Biophys Acta. 2015 Jan;1849(1):64-70. doi: 10.1016/j.bbagrm.2014.11.007. Epub 2014 Dec 3. Review.

PMID:
25481283
42.

Bacteria-triggered systemic immunity in barley is associated with WRKY and ETHYLENE RESPONSIVE FACTORs but not with salicylic acid.

Dey S, Wenig M, Langen G, Sharma S, Kugler KG, Knappe C, Hause B, Bichlmeier M, Babaeizad V, Imani J, Janzik I, Stempfl T, Hückelhoven R, Kogel KH, Mayer KF, Vlot AC.

Plant Physiol. 2014 Dec;166(4):2133-51. doi: 10.1104/pp.114.249276. Epub 2014 Oct 20.

43.

A powerful tool for genome analysis in maize: development and evaluation of the high density 600 k SNP genotyping array.

Unterseer S, Bauer E, Haberer G, Seidel M, Knaak C, Ouzunova M, Meitinger T, Strom TM, Fries R, Pausch H, Bertani C, Davassi A, Mayer KF, Schön CC.

BMC Genomics. 2014 Sep 29;15:823. doi: 10.1186/1471-2164-15-823.

44.

Convergent targeting of a common host protein-network by pathogen effectors from three kingdoms of life.

Weßling R, Epple P, Altmann S, He Y, Yang L, Henz SR, McDonald N, Wiley K, Bader KC, Gläßer C, Mukhtar MS, Haigis S, Ghamsari L, Stephens AE, Ecker JR, Vidal M, Jones JD, Mayer KF, Ver Loren van Themaat E, Weigel D, Schulze-Lefert P, Dangl JL, Panstruga R, Braun P.

Cell Host Microbe. 2014 Sep 10;16(3):364-75. doi: 10.1016/j.chom.2014.08.004.

45.

Genetic analysis of DEFECTIVE KERNEL1 loop function in three-dimensional body patterning in Physcomitrella patens.

Demko V, Perroud PF, Johansen W, Delwiche CF, Cooper ED, Remme P, Ako AE, Kugler KG, Mayer KF, Quatrano R, Olsen OA.

Plant Physiol. 2014 Oct;166(2):903-19. doi: 10.1104/pp.114.243758. Epub 2014 Sep 2.

46.

Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.

Behringer C, Bastakis E, Ranftl QL, Mayer KF, Schwechheimer C.

Plant Physiol. 2014 Sep;166(1):293-305. doi: 10.1104/pp.114.246660. Epub 2014 Jul 30.

47.

The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication.

Wang M, Yu Y, Haberer G, Marri PR, Fan C, Goicoechea JL, Zuccolo A, Song X, Kudrna D, Ammiraju JS, Cossu RM, Maldonado C, Chen J, Lee S, Sisneros N, de Baynast K, Golser W, Wissotski M, Kim W, Sanchez P, Ndjiondjop MN, Sanni K, Long M, Carney J, Panaud O, Wicker T, Machado CA, Chen M, Mayer KF, Rounsley S, Wing RA.

Nat Genet. 2014 Sep;46(9):982-8. doi: 10.1038/ng.3044. Epub 2014 Jul 27.

PMID:
25064006
48.

Ancient hybridizations among the ancestral genomes of bread wheat.

Marcussen T, Sandve SR, Heier L, Spannagl M, Pfeifer M; International Wheat Genome Sequencing Consortium,, Jakobsen KS, Wulff BB, Steuernagel B, Mayer KF, Olsen OA.

Science. 2014 Jul 18;345(6194):1250092. doi: 10.1126/science.1250092.

49.

Genome interplay in the grain transcriptome of hexaploid bread wheat.

Pfeifer M, Kugler KG, Sandve SR, Zhan B, Rudi H, Hvidsten TR; International Wheat Genome Sequencing Consortium, Mayer KF, Olsen OA.

Science. 2014 Jul 18;345(6194):1250091. doi: 10.1126/science.1250091.

50.

Slicing the wheat genome. Introduction.

Eversole K, Feuillet C, Mayer KF, Rogers J.

Science. 2014 Jul 18;345(6194):285-7. doi: 10.1126/science.1257983. No abstract available.

PMID:
25035484

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