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Items: 1 to 50 of 83

1.

Twenty Years on: Metabolomics in Helminth Research.

Kokova D, Mayboroda OA.

Trends Parasitol. 2019 Apr;35(4):282-288. doi: 10.1016/j.pt.2019.01.012. Epub 2019 Feb 26. Review.

PMID:
30824203
2.

Sheathless CE-MS based metabolic profiling of kidney tissue section samples from a mouse model of Polycystic Kidney Disease.

Sánchez-López E, Kammeijer GSM, Crego AL, Marina ML, Ramautar R, Peters DJM, Mayboroda OA.

Sci Rep. 2019 Jan 28;9(1):806. doi: 10.1038/s41598-018-37512-8.

3.

Dynamic differences in dietary polyunsaturated fatty acid metabolism in sputum of COPD patients and controls.

van der Does AM, Heijink M, Mayboroda OA, Persson LJ, Aanerud M, Bakke P, Eagan TM, Hiemstra PS, Giera M.

Biochim Biophys Acta Mol Cell Biol Lipids. 2019 Mar;1864(3):224-233. doi: 10.1016/j.bbalip.2018.11.012. Epub 2018 Dec 5.

4.

Zebrafish Larvae Are a Suitable Model to Investigate the Metabolic Phenotype of Drug-Induced Renal Tubular Injury.

Morello J, Derks RJE, Lopes SS, Steenvoorden E, Monteiro EC, Mayboroda OA, Pereira SA.

Front Pharmacol. 2018 Oct 16;9:1193. doi: 10.3389/fphar.2018.01193. eCollection 2018.

5.

KIMBLE: A versatile visual NMR metabolomics workbench in KNIME.

Verhoeven A, Giera M, Mayboroda OA.

Anal Chim Acta. 2018 Dec 31;1044:66-76. doi: 10.1016/j.aca.2018.07.070. Epub 2018 Jul 30.

6.

Urinary metabolites predict prolonged duration of delayed graft function in DCD kidney transplant recipients.

Kostidis S, Bank JR, Soonawala D, Nevedomskaya E, van Kooten C, Mayboroda OA, de Fijter JW.

Am J Transplant. 2019 Jan;19(1):110-122. doi: 10.1111/ajt.14941. Epub 2018 Jun 15.

PMID:
29786954
7.

Exploratory metabolomics study of the experimental opisthorchiasis in a laboratory animal model (golden hamster, Mesocricetus auratus).

Kokova DA, Kostidis S, Morello J, Dementeva N, Perina EA, Ivanov VV, Ogorodova LM, Sazonov AE, Saltykova IV, Mayboroda OA.

PLoS Negl Trop Dis. 2017 Oct 31;11(10):e0006044. doi: 10.1371/journal.pntd.0006044. eCollection 2017 Oct.

8.

Usefulness of zebrafish larvae to evaluate drug-induced functional and morphological renal tubular alterations.

Gorgulho R, Jacinto R, Lopes SS, Pereira SA, Tranfield EM, Martins GG, Gualda EJ, Derks RJE, Correia AC, Steenvoorden E, Pintado P, Mayboroda OA, Monteiro EC, Morello J.

Arch Toxicol. 2018 Jan;92(1):411-423. doi: 10.1007/s00204-017-2063-1. Epub 2017 Sep 20.

PMID:
28932931
9.

A cross-platform metabolomics workflow for volume-restricted tissue samples: application to an animal model for polycystic kidney disease.

Sánchez-López E, Happé H, Steenvoorden E, Crego AL, Marina ML, Peters DJM, Mayboroda OA.

Mol Biosyst. 2017 Sep 26;13(10):1940-1945. doi: 10.1039/c7mb00245a.

PMID:
28820206
10.

Current Methods of the Circulating Tumor Cells (CTC) Analysis: A Brief Overview.

Dementeva N, Kokova D, Mayboroda OA.

Curr Pharm Des. 2017;23(32):4726-4728. doi: 10.2174/1381612823666170616082608. Review.

PMID:
28625134
11.

Sialic acid linkage differentiation of glycopeptides using capillary electrophoresis - electrospray ionization - mass spectrometry.

Kammeijer GSM, Jansen BC, Kohler I, Heemskerk AAM, Mayboroda OA, Hensbergen PJ, Schappler J, Wuhrer M.

Sci Rep. 2017 Jun 16;7(1):3733. doi: 10.1038/s41598-017-03838-y.

12.

Quantitative NMR analysis of intra- and extracellular metabolism of mammalian cells: A tutorial.

Kostidis S, Addie RD, Morreau H, Mayboroda OA, Giera M.

Anal Chim Acta. 2017 Aug 8;980:1-24. doi: 10.1016/j.aca.2017.05.011. Epub 2017 May 24. Review.

13.

Automated quantification of metabolites in blood-derived samples by NMR.

Verhoeven A, Slagboom E, Wuhrer M, Giera M, Mayboroda OA.

Anal Chim Acta. 2017 Jul 11;976:52-62. doi: 10.1016/j.aca.2017.04.013. Epub 2017 Apr 13.

14.

1H-NMR analysis of feces: new possibilities in the helminthes infections research.

Kostidis S, Kokova D, Dementeva N, Saltykova IV, Kim HK, Choi YH, Mayboroda OA.

BMC Infect Dis. 2017 Apr 17;17(1):275. doi: 10.1186/s12879-017-2351-7.

15.

Investigation on the combined effect of cocaine and ethanol administration through a liquid chromatography-mass spectrometry metabolomics approach.

Sánchez-López E, Marcos A, Ambrosio E, Mayboroda OA, Marina ML, Crego AL.

J Pharm Biomed Anal. 2017 Jun 5;140:313-321. doi: 10.1016/j.jpba.2017.03.061. Epub 2017 Mar 31.

PMID:
28384623
16.

The hypoxanthine-xanthine oxidase axis is not involved in the initial phase of clinical transplantation-related ischemia-reperfusion injury.

Wijermars LG, Bakker JA, de Vries DK, van Noorden CJ, Bierau J, Kostidis S, Mayboroda OA, Tsikas D, Schaapherder AF, Lindeman JH.

Am J Physiol Renal Physiol. 2017 Mar 1;312(3):F457-F464. doi: 10.1152/ajprenal.00214.2016. Epub 2016 Dec 28.

17.

Interspecies Interactions between Clostridium difficile and Candida albicans.

van Leeuwen PT, van der Peet JM, Bikker FJ, Hoogenkamp MA, Oliveira Paiva AM, Kostidis S, Mayboroda OA, Smits WK, Krom BP.

mSphere. 2016 Nov 9;1(6). pii: e00187-16. eCollection 2016 Nov-Dec.

18.

Metabolomic changes in CSF of migraine patients measured with 1H-NMR spectroscopy.

Zielman R, Postma R, Verhoeven A, Bakels F, van Oosterhout WP, Meissner A, van den Maagdenberg AM, Terwindt GM, Mayboroda OA, Ferrari MD.

Mol Biosyst. 2016 Nov 15;12(12):3674-3682.

PMID:
27734045
19.

Defective postreperfusion metabolic recovery directly associates with incident delayed graft function.

Wijermars LG, Schaapherder AF, de Vries DK, Verschuren L, Wüst RC, Kostidis S, Mayboroda OA, Prins F, Ringers J, Bierau J, Bakker JA, Kooistra T, Lindeman JH.

Kidney Int. 2016 Jul;90(1):181-91. doi: 10.1016/j.kint.2016.02.034. Epub 2016 May 14.

PMID:
27188504
20.

Dopant Enriched Nitrogen Gas Combined with Sheathless Capillary Electrophoresis-Electrospray Ionization-Mass Spectrometry for Improved Sensitivity and Repeatability in Glycopeptide Analysis.

Kammeijer GS, Kohler I, Jansen BC, Hensbergen PJ, Mayboroda OA, Falck D, Wuhrer M.

Anal Chem. 2016 Jun 7;88(11):5849-56. doi: 10.1021/acs.analchem.6b00479. Epub 2016 May 12.

PMID:
27119460
21.

HDL functionality in South Asians as compared to white Caucasians.

Bakker LE, Boon MR, Annema W, Dikkers A, van Eyk HJ, Verhoeven A, Mayboroda OA, Jukema JW, Havekes LM, Meinders AE, Willems van Dijk K, Jazet IM, Tietge UJ, Rensen PC.

Nutr Metab Cardiovasc Dis. 2016 Aug;26(8):697-705. doi: 10.1016/j.numecd.2016.02.010. Epub 2016 Feb 19.

PMID:
27052926
22.

Exploratory urinary metabolomics of type 1 leprosy reactions.

Mayboroda OA, van Hooij A, Derks R, van den Eeden SJ, Dijkman K, Khadge S, Thapa P, Kunwar CB, Hagge DA, Geluk A.

Int J Infect Dis. 2016 Apr;45:46-52. doi: 10.1016/j.ijid.2016.02.012. Epub 2016 Feb 26.

23.

A Systems Oncology Approach Identifies NT5E as a Key Metabolic Regulator in Tumor Cells and Modulator of Platinum Sensitivity.

Nevedomskaya E, Perryman R, Solanki S, Syed N, Mayboroda OA, Keun HC.

J Proteome Res. 2016 Jan 4;15(1):280-90. doi: 10.1021/acs.jproteome.5b00793. Epub 2015 Dec 17.

24.

Comparing two metabolic profiling approaches (liquid chromatography and gas chromatography coupled to mass spectrometry) for extra-virgin olive oil phenolic compounds analysis: A botanical classification perspective.

Bajoub A, Pacchiarotta T, Hurtado-Fernández E, Olmo-García L, García-Villalba R, Fernández-Gutiérrez A, Mayboroda OA, Carrasco-Pancorbo A.

J Chromatogr A. 2016 Jan 8;1428:267-79. doi: 10.1016/j.chroma.2015.10.059. Epub 2015 Oct 26.

PMID:
26554295
25.

Ethanol contamination of cerebrospinal fluid during standardized sampling and its effect on (1)H-NMR metabolomics.

van der Sar SA, Zielman R, Terwindt GM, van den Maagdenberg AM, Deelder AM, Mayboroda OA, Meissner A, Ferrari MD.

Anal Bioanal Chem. 2015 Jun;407(16):4835-9. doi: 10.1007/s00216-015-8663-9. Epub 2015 May 3.

26.

Helminth infections and type 2 diabetes: a cluster-randomized placebo controlled SUGARSPIN trial in Nangapanda, Flores, Indonesia.

Tahapary DL, de Ruiter K, Martin I, van Lieshout L, Guigas B, Soewondo P, Djuardi Y, Wiria AE, Mayboroda OA, Houwing-Duistermaat JJ, Tasman H, Sartono E, Yazdanbakhsh M, Smit JW, Supali T.

BMC Infect Dis. 2015 Mar 18;15:133. doi: 10.1186/s12879-015-0873-4.

27.

Plasma metabolic profiling after cortical spreading depression in a transgenic mouse model of hemiplegic migraine by capillary electrophoresis--mass spectrometry.

Shyti R, Kohler I, Schoenmaker B, Derks RJ, Ferrari MD, Tolner EA, Mayboroda OA, van den Maagdenberg AM.

Mol Biosyst. 2015 May;11(5):1462-71. doi: 10.1039/c5mb00049a.

PMID:
25856790
28.

Opisthorchiasis: an overlooked danger.

Ogorodova LM, Fedorova OS, Sripa B, Mordvinov VA, Katokhin AV, Keiser J, Odermatt P, Brindley PJ, Mayboroda OA, Velavan TP, Freidin MB, Sazonov AE, Saltykova IV, Pakharukova MY, Kovshirina YV, Kaloulis K, Krylova OY, Yazdanbakhsh M; TOPIC Consortium.

PLoS Negl Trop Dis. 2015 Apr 2;9(4):e0003563. doi: 10.1371/journal.pntd.0003563. eCollection 2015 Apr. No abstract available.

29.

Exploratory analysis of urinary tract infection using a GC-APCI-MS platform.

Pacchiarotta T, Derks RJ, Nevedomskaya E, van der Starre W, van Dissel J, Deelder A, Mayboroda OA.

Analyst. 2015 Apr 21;140(8):2834-41. doi: 10.1039/c5an00033e. Epub 2015 Mar 2.

PMID:
25730398
30.

Clinical severity of visceral leishmaniasis is associated with changes in immunoglobulin g fc N-glycosylation.

Gardinassi LG, Dotz V, Hipgrave Ederveen A, de Almeida RP, Nery Costa CH, Costa DL, de Jesus AR, Mayboroda OA, Garcia GR, Wuhrer M, de Miranda Santos IK.

MBio. 2014 Dec 2;5(6):e01844. doi: 10.1128/mBio.01844-14.

31.

Metabolomic analysis of avocado fruits by GC-APCI-TOF MS: effects of ripening degrees and fruit varieties.

Hurtado-Fernández E, Pacchiarotta T, Mayboroda OA, Fernández-Gutiérrez A, Carrasco-Pancorbo A.

Anal Bioanal Chem. 2015 Jan;407(2):547-55. doi: 10.1007/s00216-014-8283-9. Epub 2014 Nov 9.

PMID:
25381615
32.

Capillary-electrophoresis mass spectrometry for the detection of carbapenemases in (multi-)drug-resistant Gram-negative bacteria.

Fleurbaaij F, Heemskerk AA, Russcher A, Klychnikov OI, Deelder AM, Mayboroda OA, Kuijper EJ, van Leeuwen HC, Hensbergen PJ.

Anal Chem. 2014 Sep 16;86(18):9154-61. doi: 10.1021/ac502049p. Epub 2014 Sep 4.

PMID:
25155175
33.

Comprehensive gas chromatography-electron ionisation mass spectrometric analysis of fatty acids and sterols using sequential one-pot silylation: quantification and isotopologue analysis.

Kloos DP, Gay E, Lingeman H, Bracher F, Müller C, Mayboroda OA, Deelder AM, Niessen WM, Giera M.

Rapid Commun Mass Spectrom. 2014 Jul 15;28(13):1507-14. doi: 10.1002/rcm.6923.

PMID:
24861601
34.

CE-ESI-MS for bottom-up proteomics: Advances in separation, interfacing and applications.

Heemskerk AA, Deelder AM, Mayboroda OA.

Mass Spectrom Rev. 2016 Mar-Apr;35(2):259-71. doi: 10.1002/mas.21432. Epub 2014 May 23. Review.

PMID:
24852088
35.

1H-NMR metabolic profiling of cerebrospinal fluid in patients with complex regional pain syndrome-related dystonia.

Meissner A, van der Plas AA, van Dasselaar NT, Deelder AM, van Hilten JJ, Mayboroda OA.

Pain. 2014 Jan;155(1):190-6. doi: 10.1016/j.pain.2013.10.005. Epub 2013 Oct 11.

PMID:
24120462
36.

Evaluation of gas chromatography-atmospheric pressure chemical ionization-mass spectrometry as an alternative to gas chromatography-electron ionization-mass spectrometry: avocado fruit as example.

Hurtado-Fernández E, Pacchiarotta T, Longueira-Suárez E, Mayboroda OA, Fernández-Gutiérrez A, Carrasco-Pancorbo A.

J Chromatogr A. 2013 Oct 25;1313:228-44. doi: 10.1016/j.chroma.2013.08.084. Epub 2013 Aug 30.

PMID:
24054422
37.

Investigations on aberrant glycosylation of glycosphingolipids in colorectal cancer tissues using liquid chromatography and matrix-assisted laser desorption time-of-flight mass spectrometry (MALDI-TOF-MS).

Holst S, Stavenhagen K, Balog CI, Koeleman CA, McDonnell LM, Mayboroda OA, Verhoeven A, Mesker WE, Tollenaar RA, Deelder AM, Wuhrer M.

Mol Cell Proteomics. 2013 Nov;12(11):3081-93. doi: 10.1074/mcp.M113.030387. Epub 2013 Jul 22.

38.

Online spectral library for GC-atmospheric pressure chemical ionization-ToF MS.

Pacchiarotta T, Derks RJ, Hurtado-Fernandez E, van Bezooijen P, Henneman A, Schiewek R, Fernández-Gutiérrez A, Carrasco-Pancorbo A, Deelder AM, Mayboroda OA.

Bioanalysis. 2013 Jun;5(12):1515-25. doi: 10.4155/bio.13.116.

PMID:
23795930
39.

An automated RP-SCX solid-phase extraction procedure for urinary peptidomics biomarker discovery studies.

Balog CI, Derks R, Mayboroda OA, Deelder AM.

Methods Mol Biol. 2013;1023:169-80. doi: 10.1007/978-1-4614-7209-4_11.

PMID:
23765626
40.

Detection and structural elucidation of esterified oxylipids in human synovial fluid by electrospray ionization-fourier transform ion-cyclotron mass spectrometry and liquid chromatography-ion trap-MS(3): detection of esterified hydroxylated docosapentaenoic acid containing phospholipids.

Jónasdóttir HS, Nicolardi S, Jonker W, Derks R, Palmblad M, Ioan-Facsinay A, Toes R, van der Burgt YE, Deelder AM, Mayboroda OA, Giera M.

Anal Chem. 2013 Jun 18;85(12):6003-10. doi: 10.1021/ac400826z. Epub 2013 May 30.

PMID:
23678963
41.

Evaluation of different column chemistries for fast urinary metabolic profiling.

Kloos DP, Lingeman H, Niessen WM, Deelder AM, Giera M, Mayboroda OA.

J Chromatogr B Analyt Technol Biomed Life Sci. 2013 May 15;927:90-6. doi: 10.1016/j.jchromb.2013.02.017. Epub 2013 Feb 26.

PMID:
23499264
42.

Coupling porous sheathless interface MS with transient-ITP in neutral capillaries for improved sensitivity in glycopeptide analysis.

Heemskerk AA, Wuhrer M, Busnel JM, Koeleman CA, Selman MH, Vidarsson G, Kapur R, Schoenmaker B, Derks RJ, Deelder AM, Mayboroda OA.

Electrophoresis. 2013 Feb;34(3):383-7. doi: 10.1002/elps.201200357. Epub 2013 Jan 3.

PMID:
23161657
43.

(1)H NMR-based metabolic profiling of urinary tract infection: combining multiple statistical models and clinical data.

Nevedomskaya E, Pacchiarotta T, Artemov A, Meissner A, van Nieuwkoop C, van Dissel JT, Mayboroda OA, Deelder AM.

Metabolomics. 2012 Dec;8(6):1227-1235. Epub 2012 Feb 29.

44.

Metabolic profiling of mouse cerebrospinal fluid by sheathless CE-MS.

Ramautar R, Shyti R, Schoenmaker B, de Groote L, Derks RJ, Ferrari MD, van den Maagdenberg AM, Deelder AM, Mayboroda OA.

Anal Bioanal Chem. 2012 Dec;404(10):2895-900. doi: 10.1007/s00216-012-6431-7. Epub 2012 Oct 7.

PMID:
23052875
45.

Lipid and lipid mediator profiling of human synovial fluid in rheumatoid arthritis patients by means of LC-MS/MS.

Giera M, Ioan-Facsinay A, Toes R, Gao F, Dalli J, Deelder AM, Serhan CN, Mayboroda OA.

Biochim Biophys Acta. 2012 Nov;1821(11):1415-24. doi: 10.1016/j.bbalip.2012.07.011. Epub 2012 Jul 24.

46.

CE-MS for proteomics: Advances in interface development and application.

Ramautar R, Heemskerk AA, Hensbergen PJ, Deelder AM, Busnel JM, Mayboroda OA.

J Proteomics. 2012 Jul 16;75(13):3814-28. doi: 10.1016/j.jprot.2012.04.050. Epub 2012 May 17. Review.

PMID:
22609513
47.

Metabolomic investigations of human infections.

Pacchiarotta T, Deelder AM, Mayboroda OA.

Bioanalysis. 2012 May;4(8):919-25. doi: 10.4155/bio.12.61. Review.

PMID:
22533566
48.

Ultra-low flow electrospray ionization-mass spectrometry for improved ionization efficiency in phosphoproteomics.

Heemskerk AA, Busnel JM, Schoenmaker B, Derks RJ, Klychnikov O, Hensbergen PJ, Deelder AM, Mayboroda OA.

Anal Chem. 2012 May 15;84(10):4552-9. doi: 10.1021/ac300641x. Epub 2012 Apr 26.

PMID:
22494114
49.

A novel peptidomics approach to detect markers of Alzheimer's disease in cerebrospinal fluid.

Wijte D, McDonnell LA, Balog CI, Bossers K, Deelder AM, Swaab DF, Verhaagen J, Mayboroda OA.

Methods. 2012 Apr;56(4):500-7. doi: 10.1016/j.ymeth.2012.03.018. Epub 2012 Mar 24.

PMID:
22465281
50.

Enhancing the coverage of the urinary metabolome by sheathless capillary electrophoresis-mass spectrometry.

Ramautar R, Busnel JM, Deelder AM, Mayboroda OA.

Anal Chem. 2012 Jan 17;84(2):885-92. doi: 10.1021/ac202407v. Epub 2011 Dec 30.

PMID:
22148170

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