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Items: 1 to 50 of 223

1.

Evidence That Ion-Based Signaling Initiating at the Cell Surface Can Potentially Influence Chromatin Dynamics and Chromatin-Bound Proteins in the Nucleus.

Matzke AJM, Lin WD, Matzke M.

Front Plant Sci. 2019 Oct 17;10:1267. doi: 10.3389/fpls.2019.01267. eCollection 2019.

2.

Global impacts of chromosomal imbalance on gene expression in Arabidopsis and other taxa.

Hou J, Shi X, Chen C, Islam MS, Johnson AF, Kanno T, Huettel B, Yen MR, Hsu FM, Ji T, Chen PY, Matzke M, Matzke AJM, Cheng J, Birchler JA.

Proc Natl Acad Sci U S A. 2018 Nov 27;115(48):E11321-E11330. doi: 10.1073/pnas.1807796115. Epub 2018 Nov 14.

3.

PRP4KA, a Putative Spliceosomal Protein Kinase, Is Important for Alternative Splicing and Development in Arabidopsis thaliana.

Kanno T, Venhuizen P, Wen TN, Lin WD, Chiou P, Kalyna M, Matzke AJM, Matzke M.

Genetics. 2018 Dec;210(4):1267-1285. doi: 10.1534/genetics.118.301515. Epub 2018 Oct 8.

4.

Resource availability, mating opportunity and sexual selection intensity influence the expression of male alternative reproductive tactics.

Ghislandi PG, Pekár S, Matzke M, Schulte-Döinghaus S, Bilde T, Tuni C.

J Evol Biol. 2018 Jul;31(7):1035-1046. doi: 10.1111/jeb.13284. Epub 2018 May 19.

PMID:
29676060
5.

A Genetic Screen Identifies PRP18a, a Putative Second Step Splicing Factor Important for Alternative Splicing and a Normal Phenotype in Arabidopsis thaliana.

Kanno T, Lin WD, Chang CL, Matzke M, Matzke AJM.

G3 (Bethesda). 2018 Mar 28;8(4):1367-1377. doi: 10.1534/g3.118.200022.

6.

Electrophysiological and behavioral effects of frontal transcranial direct current stimulation on cognitive fatigue in multiple sclerosis.

Fiene M, Rufener KS, Kuehne M, Matzke M, Heinze HJ, Zaehle T.

J Neurol. 2018 Mar;265(3):607-617. doi: 10.1007/s00415-018-8754-6. Epub 2018 Jan 22.

PMID:
29356975
7.

Effects of five sulphonamides on duckweed (Lemna minor) after prolonged exposure time and their dependency on photoradiation.

Białk-Bielińska A, Matzke M, Caban M, Stolte S, Kumirska J, Stepnowski P.

Sci Total Environ. 2018 Mar 15;618:952-960. doi: 10.1016/j.scitotenv.2017.08.286. Epub 2017 Oct 25.

PMID:
29079087
8.

Complementary Imaging of Silver Nanoparticle Interactions with Green Algae: Dark-Field Microscopy, Electron Microscopy, and Nanoscale Secondary Ion Mass Spectrometry.

Sekine R, Moore KL, Matzke M, Vallotton P, Jiang H, Hughes GM, Kirby JK, Donner E, Grovenor CRM, Svendsen C, Lombi E.

ACS Nano. 2017 Nov 28;11(11):10894-10902. doi: 10.1021/acsnano.7b04556. Epub 2017 Nov 13.

9.

A Genetic Screen for Pre-mRNA Splicing Mutants of Arabidopsis thaliana Identifies Putative U1 snRNP Components RBM25 and PRP39a.

Kanno T, Lin WD, Fu JL, Chang CL, Matzke AJM, Matzke M.

Genetics. 2017 Dec;207(4):1347-1359. doi: 10.1534/genetics.117.300149. Epub 2017 Sep 29. Erratum in: Genetics. 2018 Apr;208(4):1671.

10.

Transplacental transmission of Neospora caninum in moose (Alces alces).

Schlieben P, Matzke M, Schulze C, Bock S, Peters M, Teifke JP, Schares G.

Vet Parasitol Reg Stud Reports. 2017 Aug;9:41-46. doi: 10.1016/j.vprsr.2017.04.006. Epub 2017 Apr 8.

PMID:
31014840
11.

A genetic screen implicates a CWC16/Yju2/CCDC130 protein and SMU1 in alternative splicing in Arabidopsis thaliana.

Kanno T, Lin WD, Fu JL, Matzke AJM, Matzke M.

RNA. 2017 Jul;23(7):1068-1079. doi: 10.1261/rna.060517.116. Epub 2017 Apr 3.

12.

ADEM-like presentation, anti-MOG antibodies, and MS pathology: TWO case reports.

Körtvélyessy P, Breu M, Pawlitzki M, Metz I, Heinze HJ, Matzke M, Mawrin C, Rommer P, Kovacs GG, Mitter C, Reindl M, Brück W, Wandinger KP, Lassmann H, Höftberger R, Leypoldt F.

Neurol Neuroimmunol Neuroinflamm. 2017 Mar 14;4(3):e335. doi: 10.1212/NXI.0000000000000335. eCollection 2017 May. No abstract available.

13.

Severe B-cell-mediated CNS disease secondary to alemtuzumab therapy.

Haghikia A, Dendrou CA, Schneider R, Grüter T, Postert T, Matzke M, Stephanik H, Fugger L, Gold R.

Lancet Neurol. 2017 Feb;16(2):104-106. doi: 10.1016/S1474-4422(16)30382-9. No abstract available.

PMID:
28102146
14.

MPLEx: a Robust and Universal Protocol for Single-Sample Integrative Proteomic, Metabolomic, and Lipidomic Analyses.

Nakayasu ES, Nicora CD, Sims AC, Burnum-Johnson KE, Kim YM, Kyle JE, Matzke MM, Shukla AK, Chu RK, Schepmoes AA, Jacobs JM, Baric RS, Webb-Robertson BJ, Smith RD, Metz TO.

mSystems. 2016 May 10;1(3). pii: e00043-16. eCollection 2016 May-Jun.

15.

Identification of Coilin Mutants in a Screen for Enhanced Expression of an Alternatively Spliced GFP Reporter Gene in Arabidopsis thaliana.

Kanno T, Lin WD, Fu JL, Wu MT, Yang HW, Lin SS, Matzke AJ, Matzke M.

Genetics. 2016 Aug;203(4):1709-20. doi: 10.1534/genetics.116.190751. Epub 2016 Jun 17.

16.

Functional electrical stimulation through direct 4-channel nerve stimulation to improve gait in multiple sclerosis: a feasibility study.

Hausmann J, Sweeney-Reed CM, Sobieray U, Matzke M, Heinze HJ, Voges J, Buentjen L.

J Neuroeng Rehabil. 2015 Nov 14;12:100. doi: 10.1186/s12984-015-0096-3.

17.

The brain as immunoprecipitator of serum autoantibodies against N-Methyl-D-aspartate receptor subunit NR1.

Castillo-Gomez E, Kästner A, Steiner J, Schneider A, Hettling B, Poggi G, Ostehr K, Uhr M, Asif AR, Matzke M, Schmidt U, Pfander V, Hammer C, Schulz TF, Binder L, Stöcker W, Weber F, Ehrenreich H.

Ann Neurol. 2016 Jan;79(1):144-51. doi: 10.1002/ana.24545. Epub 2015 Dec 2.

PMID:
26505629
18.

Expression and testing in plants of ArcLight, a genetically-encoded voltage indicator used in neuroscience research.

Matzke AJ, Matzke M.

BMC Plant Biol. 2015 Oct 12;15:245. doi: 10.1186/s12870-015-0633-z.

19.

Different routes, same pathways: Molecular mechanisms under silver ion and nanoparticle exposures in the soil sentinel Eisenia fetida.

Novo M, Lahive E, Díez-Ortiz M, Matzke M, Morgan AJ, Spurgeon DJ, Svendsen C, Kille P.

Environ Pollut. 2015 Oct;205:385-93. doi: 10.1016/j.envpol.2015.07.010. Epub 2015 Jul 20.

20.

GFP Loss-of-Function Mutations in Arabidopsis thaliana.

Fu JL, Kanno T, Liang SC, Matzke AJ, Matzke M.

G3 (Bethesda). 2015 Jul 6;5(9):1849-55. doi: 10.1534/g3.115.019604.

21.

Mixed messages from benthic microbial communities exposed to nanoparticulate and ionic silver: 3D structure picks up nano-specific effects, while EPS and traditional endpoints indicate a concentration-dependent impact of silver ions.

Kroll A, Matzke M, Rybicki M, Obert-Rauser P, Burkart C, Jurkschat K, Verweij R, Sgier L, Jungmann D, Backhaus T, Svendsen C.

Environ Sci Pollut Res Int. 2016 Mar;23(5):4218-34. doi: 10.1007/s11356-015-4887-7. Epub 2015 Jun 28.

22.

Proteomic analysis reveals down-regulation of surfactant protein B in murine type II pneumocytes infected with influenza A virus.

Kebaabetswe LP, Haick AK, Gritsenko MA, Fillmore TL, Chu RK, Purvine SO, Webb-Robertson BJ, Matzke MM, Smith RD, Waters KM, Metz TO, Miura TA.

Virology. 2015 Sep;483:96-107. doi: 10.1016/j.virol.2015.03.045. Epub 2015 May 15.

23.

Soil pH effects on the interactions between dissolved zinc, non-nano- and nano-ZnO with soil bacterial communities.

Read DS, Matzke M, Gweon HS, Newbold LK, Heggelund L, Ortiz MD, Lahive E, Spurgeon D, Svendsen C.

Environ Sci Pollut Res Int. 2016 Mar;23(5):4120-8. doi: 10.1007/s11356-015-4538-z. Epub 2015 Apr 24.

PMID:
25903189
24.

Review, evaluation, and discussion of the challenges of missing value imputation for mass spectrometry-based label-free global proteomics.

Webb-Robertson BJ, Wiberg HK, Matzke MM, Brown JN, Wang J, McDermott JE, Smith RD, Rodland KD, Metz TO, Pounds JG, Waters KM.

J Proteome Res. 2015 May 1;14(5):1993-2001. doi: 10.1021/pr501138h. Epub 2015 Apr 22. Review.

25.

An Rtf2 Domain-Containing Protein Influences Pre-mRNA Splicing and Is Essential for Embryonic Development in Arabidopsis thaliana.

Sasaki T, Kanno T, Liang SC, Chen PY, Liao WW, Lin WD, Matzke AJ, Matzke M.

Genetics. 2015 Jun;200(2):523-35. doi: 10.1534/genetics.115.176438. Epub 2015 Mar 27.

26.

Data integration reveals key homeostatic mechanisms following low dose radiation exposure.

Tilton SC, Matzke MM, Sowa MB, Stenoien DL, Weber TJ, Morgan WF, Waters KM.

Toxicol Appl Pharmacol. 2015 May 15;285(1):1-11. doi: 10.1016/j.taap.2015.01.019. Epub 2015 Feb 2.

PMID:
25655199
27.

RNA-Directed DNA Methylation: The Evolution of a Complex Epigenetic Pathway in Flowering Plants.

Matzke MA, Kanno T, Matzke AJ.

Annu Rev Plant Biol. 2015;66:243-67. doi: 10.1146/annurev-arplant-043014-114633. Epub 2014 Dec 10. Review.

PMID:
25494460
28.

Bayesian proteoform modeling improves protein quantification of global proteomic measurements.

Webb-Robertson BJ, Matzke MM, Datta S, Payne SH, Kang J, Bramer LM, Nicora CD, Shukla AK, Metz TO, Rodland KD, Smith RD, Tardiff MF, McDermott JE, Pounds JG, Waters KM.

Mol Cell Proteomics. 2014 Dec;13(12):3639-46. doi: 10.1074/mcp.M113.030932.

29.

De novo transcriptome sequence assembly from coconut leaves and seeds with a focus on factors involved in RNA-directed DNA methylation.

Huang YY, Lee CP, Fu JL, Chang BC, Matzke AJ, Matzke M.

G3 (Bethesda). 2014 Sep 4;4(11):2147-57. doi: 10.1534/g3.114.013409.

30.

Bayesian Proteoform Modeling Improves Protein Quantification of Global Proteomic Measurements.

Webb-Robertson BJ, Matzke MM, Datta S, Payne SH, Kang J, Bramer LM, Nicora CD, Shukla AK, Metz TO, Rodland KD, Smith RD, Tardiff MF, McDermott JE, Pounds JG, Waters KM.

Mol Cell Proteomics. 2014 Aug 16. pii: mcp.O113.030932. [Epub ahead of print]

31.

Pathogenic influenza viruses and coronaviruses utilize similar and contrasting approaches to control interferon-stimulated gene responses.

Menachery VD, Eisfeld AJ, Schäfer A, Josset L, Sims AC, Proll S, Fan S, Li C, Neumann G, Tilton SC, Chang J, Gralinski LE, Long C, Green R, Williams CM, Weiss J, Matzke MM, Webb-Robertson BJ, Schepmoes AA, Shukla AK, Metz TO, Smith RD, Waters KM, Katze MG, Kawaoka Y, Baric RS.

mBio. 2014 May 20;5(3):e01174-14. doi: 10.1128/mBio.01174-14.

32.

RNA-directed DNA methylation: an epigenetic pathway of increasing complexity.

Matzke MA, Mosher RA.

Nat Rev Genet. 2014 Jun;15(6):394-408. doi: 10.1038/nrg3683. Epub 2014 May 8. Review. Erratum in: Nat Rev Genet. 2014 Aug;15(8):570.

PMID:
24805120
33.

Distinct and concurrent pathways of Pol II- and Pol IV-dependent siRNA biogenesis at a repetitive trans-silencer locus in Arabidopsis thaliana.

Sasaki T, Lee TF, Liao WW, Naumann U, Liao JL, Eun C, Huang YY, Fu JL, Chen PY, Meyers BC, Matzke AJ, Matzke M.

Plant J. 2014 Jul;79(1):127-38. doi: 10.1111/tpj.12545. Epub 2014 Jun 13.

34.

Reduced magnetisation transfer ratio in cognitively impaired patients at the very early stage of multiple sclerosis: a prospective, multicenter, cross-sectional study.

Faiss JH, Dähne D, Baum K, Deppe R, Hoffmann F, Köhler W, Kunkel A, Lux A, Matzke M, Penner IK, Sailer M, Zettl UK.

BMJ Open. 2014 Apr 10;4(4):e004409. doi: 10.1136/bmjopen-2013-004409.

35.

Toxicity of differently sized and coated silver nanoparticles to the bacterium Pseudomonas putida: risks for the aquatic environment?

Matzke M, Jurkschat K, Backhaus T.

Ecotoxicology. 2014 Jul;23(5):818-29. doi: 10.1007/s10646-014-1222-x.

PMID:
24659347
36.

High and low doses of ionizing radiation induce different secretome profiles in a human skin model.

Zhang Q, Matzke M, Schepmoes AA, Moore RJ, Webb-Robertson BJ, Hu Z, Monroe ME, Qian WJ, Smith RD, Morgan WF.

PLoS One. 2014 Mar 18;9(3):e92332. doi: 10.1371/journal.pone.0092332. eCollection 2014.

37.

The ability to form homodimers is essential for RDM1 to function in RNA-directed DNA methylation.

Sasaki T, Lorković ZJ, Liang SC, Matzke AJ, Matzke M.

PLoS One. 2014 Feb 3;9(2):e88190. doi: 10.1371/journal.pone.0088190. eCollection 2014.

38.

Advancing the high throughput identification of liver fibrosis protein signatures using multiplexed ion mobility spectrometry.

Baker ES, Burnum-Johnson KE, Jacobs JM, Diamond DL, Brown RN, Ibrahim YM, Orton DJ, Piehowski PD, Purdy DE, Moore RJ, Danielson WF 3rd, Monroe ME, Crowell KL, Slysz GW, Gritsenko MA, Sandoval JD, Lamarche BL, Matzke MM, Webb-Robertson BJ, Simons BC, McMahon BJ, Bhattacharya R, Perkins JD, Carithers RL Jr, Strom S, Self SG, Katze MG, Anderson GA, Smith RD.

Mol Cell Proteomics. 2014 Apr;13(4):1119-27. doi: 10.1074/mcp.M113.034595. Epub 2014 Jan 8.

39.

A comprehensive collection of systems biology data characterizing the host response to viral infection.

Aevermann BD, Pickett BE, Kumar S, Klem EB, Agnihothram S, Askovich PS, Bankhead A 3rd, Bolles M, Carter V, Chang J, Clauss TR, Dash P, Diercks AH, Eisfeld AJ, Ellis A, Fan S, Ferris MT, Gralinski LE, Green RR, Gritsenko MA, Hatta M, Heegel RA, Jacobs JM, Jeng S, Josset L, Kaiser SM, Kelly S, Law GL, Li C, Li J, Long C, Luna ML, Matzke M, McDermott J, Menachery V, Metz TO, Mitchell H, Monroe ME, Navarro G, Neumann G, Podyminogin RL, Purvine SO, Rosenberger CM, Sanders CJ, Schepmoes AA, Shukla AK, Sims A, Sova P, Tam VC, Tchitchek N, Thomas PG, Tilton SC, Totura A, Wang J, Webb-Robertson BJ, Wen J, Weiss JM, Yang F, Yount B, Zhang Q, McWeeney S, Smith RD, Waters KM, Kawaoka Y, Baric R, Aderem A, Katze MG, Scheuermann RH.

Sci Data. 2014 Oct 14;1:140033. doi: 10.1038/sdata.2014.33. eCollection 2014.

40.

Metalloproteins and phytochelatin synthase may confer protection against zinc oxide nanoparticle induced toxicity in Caenorhabditis elegans.

Polak N, Read DS, Jurkschat K, Matzke M, Kelly FJ, Spurgeon DJ, Stürzenbaum SR.

Comp Biochem Physiol C Toxicol Pharmacol. 2014 Mar;160:75-85. doi: 10.1016/j.cbpc.2013.12.001. Epub 2013 Dec 11.

PMID:
24333255
41.

A halotyrosine antibody that detects increased protein modifications in asthma patients.

Jin H, Hallstrand TS, Daly DS, Matzke MM, Nair P, Bigelow DJ, Pounds JG, Zangar RC.

J Immunol Methods. 2014 Jan 31;403(1-2):17-25. doi: 10.1016/j.jim.2013.11.013. Epub 2013 Dec 2.

42.

A semiautomated framework for integrating expert knowledge into disease marker identification.

Wang J, Webb-Robertson BJ, Matzke MM, Varnum SM, Brown JN, Riensche RM, Adkins JN, Jacobs JM, Hoidal JR, Scholand MB, Pounds JG, Blackburn MR, Rodland KD, McDermott JE.

Dis Markers. 2013;35(5):513-23. doi: 10.1155/2013/613529. Epub 2013 Oct 10.

43.

Complete sequence and comparative analysis of the chloroplast genome of coconut palm (Cocos nucifera).

Huang YY, Matzke AJ, Matzke M.

PLoS One. 2013 Aug 30;8(8):e74736. doi: 10.1371/journal.pone.0074736. eCollection 2013.

44.

Membrane "potential-omics": toward voltage imaging at the cell population level in roots of living plants.

Matzke AJ, Matzke M.

Front Plant Sci. 2013 Aug 6;4:311. doi: 10.3389/fpls.2013.00311. eCollection 2013.

45.

A network integration approach to predict conserved regulators related to pathogenicity of influenza and SARS-CoV respiratory viruses.

Mitchell HD, Eisfeld AJ, Sims AC, McDermott JE, Matzke MM, Webb-Robertson BJ, Tilton SC, Tchitchek N, Josset L, Li C, Ellis AL, Chang JH, Heegel RA, Luna ML, Schepmoes AA, Shukla AK, Metz TO, Neumann G, Benecke AG, Smith RD, Baric RS, Kawaoka Y, Katze MG, Waters KM.

PLoS One. 2013 Jul 25;8(7):e69374. doi: 10.1371/journal.pone.0069374. Print 2013.

46.

Mechanisms of severe acute respiratory syndrome coronavirus-induced acute lung injury.

Gralinski LE, Bankhead A 3rd, Jeng S, Menachery VD, Proll S, Belisle SE, Matzke M, Webb-Robertson BJ, Luna ML, Shukla AK, Ferris MT, Bolles M, Chang J, Aicher L, Waters KM, Smith RD, Metz TO, Law GL, Katze MG, McWeeney S, Baric RS.

mBio. 2013 Aug 6;4(4). pii: e00271-13. doi: 10.1128/mBio.00271-13.

47.

Comparative developmental toxicity of environmentally relevant oxygenated PAHs.

Knecht AL, Goodale BC, Truong L, Simonich MT, Swanson AJ, Matzke MM, Anderson KA, Waters KM, Tanguay RL.

Toxicol Appl Pharmacol. 2013 Sep 1;271(2):266-75. doi: 10.1016/j.taap.2013.05.006. Epub 2013 May 14.

48.

Interplay among RNA polymerases II, IV and V in RNA-directed DNA methylation at a low copy transgene locus in Arabidopsis thaliana.

You W, Lorkovic ZJ, Matzke AJ, Matzke M.

Plant Mol Biol. 2013 May;82(1-2):85-96. doi: 10.1007/s11103-013-0041-4. Epub 2013 Mar 20.

49.

Sequential projection pursuit principal component analysis--dealing with missing data associated with new -omics technologies.

Webb-Robertson BJ, Matzke MM, Metz TO, McDermott JE, Walker H, Rodland KD, Pounds JG, Waters KM.

Biotechniques. 2013 Mar;54(3):165-8. doi: 10.2144/000113978.

50.

Association of carcinogenic polycyclic aromatic hydrocarbon emissions and smoking with lung cancer mortality rates on a global scale.

Motorykin O, Matzke MM, Waters KM, Massey Simonich SL.

Environ Sci Technol. 2013 Apr 2;47(7):3410-6. doi: 10.1021/es305295d. Epub 2013 Mar 8.

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