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Items: 1 to 50 of 120

1.

Cadmium exposure and MEG3 methylation differences between Whites and African Americans in the NEST Cohort.

House JS, Hall J, Park SS, Planchart A, Money E, Maguire RL, Huang Z, Mattingly CJ, Skaar D, Tzeng JY, Darrah TH, Vengosh A, Murphy SK, Jirtle RL, Hoyo C.

Environ Epigenet. 2019 Aug 29;5(3):dvz014. doi: 10.1093/eep/dvz014. eCollection 2019 Jul.

2.

Analytical Treatment Interruption after Short-Term Antiretroviral Therapy in a Postnatally Simian-Human Immunodeficiency Virus-Infected Infant Rhesus Macaque Model.

Goswami R, Nelson AN, Tu JJ, Dennis M, Feng L, Kumar A, Mangold J, Mangan RJ, Mattingly C, Curtis AD 2nd, Obregon-Perko V, Mavigner M, Pollara J, Shaw GM, Bar KJ, Chahroudi A, De Paris K, Chan C, Van Rompay KKA, Permar SR.

MBio. 2019 Sep 5;10(5). pii: e01971-19. doi: 10.1128/mBio.01971-19.

3.

Integration of curated and high-throughput screening data to elucidate environmental influences on disease pathways.

Kosnik MB, Planchart A, Marvel SW, Reif DM, Mattingly CJ.

Comput Toxicol. 2019 Nov;12. pii: 100094. doi: 10.1016/j.comtox.2019.100094. Epub 2019 Jun 27.

PMID:
31453412
4.

Prospective Validation of an Ex Vivo, Patient-Derived 3D Spheroid Model for Response Predictions in Newly Diagnosed Ovarian Cancer.

Shuford S, Wilhelm C, Rayner M, Elrod A, Millard M, Mattingly C, Lotstein A, Smith AM, Guo QJ, O'Donnell L, Elder J, Puls L, Weroha SJ, Hou X, Zanfagnin V, Nick A, Stany MP, Maxwell GL, Conrads T, Sood AK, Orr D, Holmes LM, Gevaert M, Crosswell HE, DesRochers TM.

Sci Rep. 2019 Aug 1;9(1):11153. doi: 10.1038/s41598-019-47578-7.

5.

Correction for Mavigner et al., "Simian Immunodeficiency Virus Persistence in Cellular and Anatomic Reservoirs in Antiretroviral Therapy-Suppressed Infant Rhesus Macaques".

Mavigner M, Habib J, Deleage C, Rosen E, Mattingly C, Bricker K, Kashuba A, Amblard F, Schinazi RF, Lawson B, Vanderford TH, Jean S, Cohen J, McGary C, Paiardini M, Wood MP, Sodora DL, Silvestri G, Estes J, Chahroudi A.

J Virol. 2019 Jan 17;93(3). pii: e01814-18. doi: 10.1128/JVI.01814-18. Print 2019 Feb 1. No abstract available.

6.

Health care as a cultural borderland.

Mattingly C.

Lancet. 2018 Jan 20;391(10117):198-199. doi: 10.1016/S0140-6736(18)30026-6. No abstract available.

PMID:
30277880
7.

The Comparative Toxicogenomics Database: update 2019.

Davis AP, Grondin CJ, Johnson RJ, Sciaky D, McMorran R, Wiegers J, Wiegers TC, Mattingly CJ.

Nucleic Acids Res. 2019 Jan 8;47(D1):D948-D954. doi: 10.1093/nar/gky868.

8.

Antibody-Mediated CD4 Depletion Induces Homeostatic CD4+ T Cell Proliferation without Detectable Virus Reactivation in Antiretroviral Therapy-Treated Simian Immunodeficiency Virus-Infected Macaques.

Kumar NA, McBrien JB, Carnathan DG, Mavigner M, Mattingly C, White ER, Viviano F, Bosinger SE, Chahroudi A, Silvestri G, Paiardini M, Vanderford TH.

J Virol. 2018 Oct 29;92(22). pii: e01235-18. doi: 10.1128/JVI.01235-18. Print 2018 Nov 15.

9.

Simian Immunodeficiency Virus Persistence in Cellular and Anatomic Reservoirs in Antiretroviral Therapy-Suppressed Infant Rhesus Macaques.

Mavigner M, Habib J, Deleage C, Rosen E, Mattingly C, Bricker K, Kashuba A, Amblard F, Schinazi RF, Lawson B, Vanderford TH, Jean S, Cohen J, McGary C, Paiardini M, Wood MP, Sodora DL, Silvestri G, Estes J, Chahroudi A.

J Virol. 2018 Aug 29;92(18). pii: e00562-18. doi: 10.1128/JVI.00562-18. Print 2018 Sep 15. Erratum in: J Virol. 2019 Jan 17;93(3):.

10.

Chemical-Induced Phenotypes at CTD Help Inform the Predisease State and Construct Adverse Outcome Pathways.

Davis AP, Wiegers TC, Wiegers J, Johnson RJ, Sciaky D, Grondin CJ, Mattingly CJ.

Toxicol Sci. 2018 Sep 1;165(1):145-156. doi: 10.1093/toxsci/kfy131.

11.

Short-Term Pegylated Interferon α2a Treatment Does Not Significantly Reduce the Viral Reservoir of Simian Immunodeficiency Virus-Infected, Antiretroviral Therapy-Treated Rhesus Macaques.

Palesch D, Bosinger SE, Mavigner M, Billingsley JM, Mattingly C, Carnathan DG, Paiardini M, Chahroudi A, Vanderford TH, Silvestri G.

J Virol. 2018 Jun 29;92(14). pii: e00279-18. doi: 10.1128/JVI.00279-18. Print 2018 Jul 15.

12.

Postnatal Zika virus infection is associated with persistent abnormalities in brain structure, function, and behavior in infant macaques.

Mavigner M, Raper J, Kovacs-Balint Z, Gumber S, O'Neal JT, Bhaumik SK, Zhang X, Habib J, Mattingly C, McDonald CE, Avanzato V, Burke MW, Magnani DM, Bailey VK, Watkins DI, Vanderford TH, Fair D, Earl E, Feczko E, Styner M, Jean SM, Cohen JK, Silvestri G, Johnson RP, O'Connor DH, Wrammert J, Suthar MS, Sanchez MM, Alvarado MC, Chahroudi A.

Sci Transl Med. 2018 Apr 4;10(435). pii: eaao6975. doi: 10.1126/scitranslmed.aao6975.

13.

Cadmium exposure increases the risk of juvenile obesity: a human and zebrafish comparative study.

Green AJ, Hoyo C, Mattingly CJ, Luo Y, Tzeng JY, Murphy SK, Buchwalter DB, Planchart A.

Int J Obes (Lond). 2018 Jul;42(7):1285-1295. doi: 10.1038/s41366-018-0036-y. Epub 2018 Feb 20.

14.

Heavy Metal Exposure and Metabolic Syndrome: Evidence from Human and Model System Studies.

Planchart A, Green A, Hoyo C, Mattingly CJ.

Curr Environ Health Rep. 2018 Mar;5(1):110-124. doi: 10.1007/s40572-018-0182-3. Review.

15.

Accessing an Expanded Exposure Science Module at the Comparative Toxicogenomics Database.

Grondin CJ, Davis AP, Wiegers TC, Wiegers JA, Mattingly CJ.

Environ Health Perspect. 2018 Jan 18;126(1):014501. doi: 10.1289/EHP2873.

16.

Mental Health in the Workplace: A Call to Action Proceedings From the Mental Health in the Workplace-Public Health Summit.

Goetzel RZ, Roemer EC, Holingue C, Fallin MD, McCleary K, Eaton W, Agnew J, Azocar F, Ballard D, Bartlett J, Braga M, Conway H, Crighton KA, Frank R, Jinnett K, Keller-Greene D, Rauch SM, Safeer R, Saporito D, Schill A, Shern D, Strecher V, Wald P, Wang P, Mattingly CR.

J Occup Environ Med. 2018 Apr;60(4):322-330. doi: 10.1097/JOM.0000000000001271.

17.

In search of the good old life: Ontological breakdown and responsive hope at the margins of life.

Grøn L, Mattingly C.

Death Stud. 2018 May-Jun;42(5):306-313. doi: 10.1080/07481187.2017.1396409. Epub 2018 Feb 6.

PMID:
29272220
18.

Moral (and Other) Laboratories and the Semantic Impertinence of Metaphor: An Afterward.

Mattingly C.

Cult Med Psychiatry. 2017 Jun;41(2):309-316. doi: 10.1007/s11013-017-9537-8. No abstract available.

PMID:
28466115
19.

Applying evolutionary genetics to developmental toxicology and risk assessment.

Leung MCK, Procter AC, Goldstone JV, Foox J, DeSalle R, Mattingly CJ, Siddall ME, Timme-Laragy AR.

Reprod Toxicol. 2017 Apr;69:174-186. doi: 10.1016/j.reprotox.2017.03.003. Epub 2017 Mar 4. Review.

20.

From the Cover: Embryonic Exposure to TCDD Impacts Osteogenesis of the Axial Skeleton in Japanese medaka, Oryzias latipes.

Watson AT, Planchart A, Mattingly CJ, Winkler C, Reif DM, Kullman SW.

Toxicol Sci. 2017 Feb;155(2):485-496. doi: 10.1093/toxsci/kfw229. Epub 2016 Nov 15.

21.

Informatics and Data Analytics to Support Exposome-Based Discovery for Public Health.

Manrai AK, Cui Y, Bushel PR, Hall M, Karakitsios S, Mattingly CJ, Ritchie M, Schmitt C, Sarigiannis DA, Thomas DC, Wishart D, Balshaw DM, Patel CJ.

Annu Rev Public Health. 2017 Mar 20;38:279-294. doi: 10.1146/annurev-publhealth-082516-012737. Epub 2016 Dec 23. Review.

22.

Advancing toxicology research using in vivo high throughput toxicology with small fish models.

Planchart A, Mattingly CJ, Allen D, Ceger P, Casey W, Hinton D, Kanungo J, Kullman SW, Tal T, Bondesson M, Burgess SM, Sullivan C, Kim C, Behl M, Padilla S, Reif DM, Tanguay RL, Hamm J.

ALTEX. 2016;33(4):435-452. doi: 10.14573/altex.1601281. Epub 2016 Jun 21.

23.

The Comparative Toxicogenomics Database: update 2017.

Davis AP, Grondin CJ, Johnson RJ, Sciaky D, King BL, McMorran R, Wiegers J, Wiegers TC, Mattingly CJ.

Nucleic Acids Res. 2017 Jan 4;45(D1):D972-D978. doi: 10.1093/nar/gkw838. Epub 2016 Sep 19.

24.

Generating Gene Ontology-Disease Inferences to Explore Mechanisms of Human Disease at the Comparative Toxicogenomics Database.

Davis AP, Wiegers TC, King BL, Wiegers J, Grondin CJ, Sciaky D, Johnson RJ, Mattingly CJ.

PLoS One. 2016 May 12;11(5):e0155530. doi: 10.1371/journal.pone.0155530. eCollection 2016.

25.

Advancing Exposure Science through Chemical Data Curation and Integration in the Comparative Toxicogenomics Database.

Grondin CJ, Davis AP, Wiegers TC, King BL, Wiegers JA, Reif DM, Hoppin JA, Mattingly CJ.

Environ Health Perspect. 2016 Oct;124(10):1592-1599. Epub 2016 May 12.

26.

BioCreative V CDR task corpus: a resource for chemical disease relation extraction.

Li J, Sun Y, Johnson RJ, Sciaky D, Wei CH, Leaman R, Davis AP, Mattingly CJ, Wiegers TC, Lu Z.

Database (Oxford). 2016 May 9;2016. pii: baw068. doi: 10.1093/database/baw068. Print 2016.

27.

ToxEvaluator: an integrated computational platform to aid the interpretation of toxicology study-related findings.

Pelletier D, Wiegers TC, Enayetallah A, Kibbey C, Gosink M, Koza-Taylor P, Mattingly CJ, Lawton M.

Database (Oxford). 2016 May 9;2016. pii: baw062. doi: 10.1093/database/baw062. Print 2016.

28.

Assessing the state of the art in biomedical relation extraction: overview of the BioCreative V chemical-disease relation (CDR) task.

Wei CH, Peng Y, Leaman R, Davis AP, Mattingly CJ, Li J, Wiegers TC, Lu Z.

Database (Oxford). 2016 Mar 19;2016. pii: baw032. doi: 10.1093/database/baw032. Print 2016.

29.

Laying a Community-Based Foundation for Data-Driven Semantic Standards in Environmental Health Sciences.

Mattingly CJ, Boyles R, Lawler CP, Haugen AC, Dearry A, Haendel M.

Environ Health Perspect. 2016 Aug;124(8):1136-40. doi: 10.1289/ehp.1510438. Epub 2016 Feb 12.

30.

A qualitative study on the ethics of transforming care: examining the development and implementation of Canada's first mental health strategy.

Park MM, Lencucha R, Mattingly C, Zafran H, Kirmayer LJ.

Implement Sci. 2015 Aug 19;10:121. doi: 10.1186/s13012-015-0297-y.

31.

The Comparative Toxicogenomics Database's 10th year anniversary: update 2015.

Davis AP, Grondin CJ, Lennon-Hopkins K, Saraceni-Richards C, Sciaky D, King BL, Wiegers TC, Mattingly CJ.

Nucleic Acids Res. 2015 Jan;43(Database issue):D914-20. doi: 10.1093/nar/gku935. Epub 2014 Oct 17.

32.

Using data to effectively manage a national screening program.

Yancy B, Royalty JE, Marroulis S, Mattingly C, Benard VB, DeGroff A.

Cancer. 2014 Aug 15;120 Suppl 16:2575-83. doi: 10.1002/cncr.28821.

33.

BioC interoperability track overview.

Comeau DC, Batista-Navarro RT, Dai HJ, Doğan RI, Yepes AJ, Khare R, Lu Z, Marques H, Mattingly CJ, Neves M, Peng Y, Rak R, Rinaldi F, Tsai RT, Verspoor K, Wiegers TC, Wu CH, Wilbur WJ.

Database (Oxford). 2014 Jun 30;2014. pii: bau053. doi: 10.1093/database/bau053. Print 2014. Review.

34.

Web services-based text-mining demonstrates broad impacts for interoperability and process simplification.

Wiegers TC, Davis AP, Mattingly CJ.

Database (Oxford). 2014 Jun 10;2014. pii: bau050. doi: 10.1093/database/bau050. Print 2014.

35.

Moral Selves and Moral Scenes: Narrative Experiments in Everyday Life.

Mattingly C.

Ethnos. 2013 Oct 1;78(3):301-327. No abstract available.

36.

A CTD-Pfizer collaboration: manual curation of 88,000 scientific articles text mined for drug-disease and drug-phenotype interactions.

Davis AP, Wiegers TC, Roberts PM, King BL, Lay JM, Lennon-Hopkins K, Sciaky D, Johnson R, Keating H, Greene N, Hernandez R, McConnell KJ, Enayetallah AE, Mattingly CJ.

Database (Oxford). 2013 Nov 28;2013:bat080. doi: 10.1093/database/bat080. Print 2013.

37.

Clinical outcomes from the CDC's Colorectal Cancer Screening Demonstration Program.

Seeff LC, Royalty J, Helsel WE, Kammerer WG, Boehm JE, Dwyer DM, Howe WR Jr, Joseph D, Lane DS, Laughlin M, Leypoldt M, Marroulis SC, Mattingly CA, Nadel MR, Phillips-Angeles E, Rockwell TJ, Ryerson AB, Tangka FK.

Cancer. 2013 Aug 1;119 Suppl 15:2820-33. doi: 10.1002/cncr.28163.

38.

Linezolid decreases susceptibility to secondary bacterial pneumonia postinfluenza infection in mice through its effects on IFN-γ.

Breslow-Deckman JM, Mattingly CM, Birket SE, Hoskins SN, Ho TN, Garvy BA, Feola DJ.

J Immunol. 2013 Aug 15;191(4):1792-9. doi: 10.4049/jimmunol.1300180. Epub 2013 Jul 5.

39.

Text mining effectively scores and ranks the literature for improving chemical-gene-disease curation at the comparative toxicogenomics database.

Davis AP, Wiegers TC, Johnson RJ, Lay JM, Lennon-Hopkins K, Saraceni-Richards C, Sciaky D, Murphy CG, Mattingly CJ.

PLoS One. 2013 Apr 17;8(4):e58201. doi: 10.1371/journal.pone.0058201. Print 2013.

40.

Azithromycin increases in vitro fibronectin production through interactions between macrophages and fibroblasts stimulated with Pseudomonas aeruginosa.

Cory TJ, Birket SE, Murphy BS, Mattingly C, Breslow-Deckman JM, Feola DJ.

J Antimicrob Chemother. 2013 Apr;68(4):840-51. doi: 10.1093/jac/dks476. Epub 2012 Dec 17.

41.

Targeted journal curation as a method to improve data currency at the Comparative Toxicogenomics Database.

Davis AP, Johnson RJ, Lennon-Hopkins K, Sciaky D, Rosenstein MC, Wiegers TC, Mattingly CJ.

Database (Oxford). 2012 Dec 6;2012:bas051. doi: 10.1093/database/bas051. Print 2012.

42.

BioCreative-2012 virtual issue.

Wu CH, Arighi CN, Cohen KB, Hirschman L, Krallinger M, Lu Z, Mattingly C, Valencia A, Wiegers TC, John Wilbur W.

Database (Oxford). 2012 Dec 5;2012:bas049. doi: 10.1093/database/bas049. Print 2012. No abstract available.

43.

Collaborative biocuration--text-mining development task for document prioritization for curation.

Wiegers TC, Davis AP, Mattingly CJ.

Database (Oxford). 2012 Nov 22;2012:bas037. doi: 10.1093/database/bas037. Print 2012.

44.

Ranking transitive chemical-disease inferences using local network topology in the comparative toxicogenomics database.

King BL, Davis AP, Rosenstein MC, Wiegers TC, Mattingly CJ.

PLoS One. 2012;7(11):e46524. doi: 10.1371/journal.pone.0046524. Epub 2012 Nov 7.

45.

The Comparative Toxicogenomics Database: update 2013.

Davis AP, Murphy CG, Johnson R, Lay JM, Lennon-Hopkins K, Saraceni-Richards C, Sciaky D, King BL, Rosenstein MC, Wiegers TC, Mattingly CJ.

Nucleic Acids Res. 2013 Jan;41(Database issue):D1104-14. doi: 10.1093/nar/gks994. Epub 2012 Oct 23.

46.

MEDIC: a practical disease vocabulary used at the Comparative Toxicogenomics Database.

Davis AP, Wiegers TC, Rosenstein MC, Mattingly CJ.

Database (Oxford). 2012 Mar 20;2012:bar065. doi: 10.1093/database/bar065. Print 2012.

47.

Disease model curation improvements at Mouse Genome Informatics.

Bello SM, Richardson JE, Davis AP, Wiegers TC, Mattingly CJ, Dolan ME, Smith CL, Blake JA, Eppig JT.

Database (Oxford). 2012 Mar 20;2012:bar063. doi: 10.1093/database/bar063. Print 2012.

48.

Providing the missing link: the exposure science ontology ExO.

Mattingly CJ, McKone TE, Callahan MA, Blake JA, Hubal EA.

Environ Sci Technol. 2012 Mar 20;46(6):3046-53. doi: 10.1021/es2033857. Epub 2012 Mar 12.

49.

DiseaseComps: a metric that discovers similar diseases based upon common toxicogenomic profiles at CTD.

Davis AP, Rosenstein MC, Wiegers TC, Mattingly CJ.

Bioinformation. 2011;7(4):154-6. Epub 2011 Oct 14.

50.

The curation paradigm and application tool used for manual curation of the scientific literature at the Comparative Toxicogenomics Database.

Davis AP, Wiegers TC, Rosenstein MC, Murphy CG, Mattingly CJ.

Database (Oxford). 2011 Sep 20;2011:bar034. doi: 10.1093/database/bar034. Print 2011. Erratum in: Database (Oxford). 2012;2012:bas012. Rosenstein, Michael C [added].

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