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G1P[8] Rotavirus in children with severe diarrhea in the post-vaccine introduction era in Brazil: Evidence of reassortments and structural modifications of the antigenic VP7 and VP4 regions.

Santos FS, Sousa Junior EC, Guerra SFS, Lobo PS, Penha Junior ET, Lima ABF, Vinente CBG, Chagas EHN, Justino MCA, Linhares AC, Matthijnssens J, Soares LS, Mascarenhas JDP.

Infect Genet Evol. 2019 Feb 11;69:255-266. doi: 10.1016/j.meegid.2019.02.009. [Epub ahead of print]


Gut Virome Analysis of Cameroonians Reveals High Diversity of Enteric Viruses, Including Potential Interspecies Transmitted Viruses.

Yinda CK, Vanhulle E, Conceição-Neto N, Beller L, Deboutte W, Shi C, Ghogomu SM, Maes P, Van Ranst M, Matthijnssens J.

mSphere. 2019 Jan 23;4(1). pii: e00585-18. doi: 10.1128/mSphere.00585-18.


Use of Next-Generation Sequencing for Diagnosis of West Nile Virus Infection in Patient Returning to Belgium from Hungary.

Wollants E, Smolders D, Naesens R, Bruynseels P, Lagrou K, Matthijnssens J, Van Ranst M.

Emerg Infect Dis. 2018 Dec;24(12):2380-2382. doi: 10.3201/eid2412.180494.


Host switching pathogens, infectious outbreaks and zoonosis: A Marie Skłodowska-Curie innovative training network (HONOURs).

van der Hoek L, Verschoor E, Beer M, Höper D, Wernike K, Van Ranst M, Matthijnssens J, Maes P, Sastre P, Rueda P, Drexler JF, Barr J, Edwards T, Millner P, Vermeij P, de Groof A, Thiel V, Dijkman R, Suter-Riniker F, Leib S, Koller R, Ramette A, Engler O, Beuret C.

Virus Res. 2018 Sep 15;257:120-124. doi: 10.1016/j.virusres.2018.09.002.


NetoVIR: Modular Approach to Customize Sample Preparation Procedures for Viral Metagenomics.

Conceição-Neto N, Yinda KC, Van Ranst M, Matthijnssens J.

Methods Mol Biol. 2018;1838:85-95. doi: 10.1007/978-1-4939-8682-8_7.


Nanopore sequencing as a revolutionary diagnostic tool for porcine viral enteric disease complexes identifies porcine kobuvirus as an important enteric virus.

Theuns S, Vanmechelen B, Bernaert Q, Deboutte W, Vandenhole M, Beller L, Matthijnssens J, Maes P, Nauwynck HJ.

Sci Rep. 2018 Jun 29;8(1):9830. doi: 10.1038/s41598-018-28180-9.


Cameroonian fruit bats harbor divergent viruses, including rotavirus H, bastroviruses, and picobirnaviruses using an alternative genetic code.

Yinda CK, Ghogomu SM, Conceição-Neto N, Beller L, Deboutte W, Vanhulle E, Maes P, Van Ranst M, Matthijnssens J.

Virus Evol. 2018 Mar 30;4(1):vey008. doi: 10.1093/ve/vey008. eCollection 2018 Jan.


Complete coding sequence of a novel picorna-like virus in a blackbird infected with Usutu virus.

Van Borm S, Steensels M, Mathijs E, Yinda CK, Matthijnssens J, Lambrecht B.

Arch Virol. 2018 Jun;163(6):1701-1703. doi: 10.1007/s00705-018-3761-6. Epub 2018 Feb 13.


Low eukaryotic viral richness is associated with faecal microbiota transplantation success in patients with UC.

Conceição-Neto N, Deboutte W, Dierckx T, Machiels K, Wang J, Yinda KC, Maes P, Van Ranst M, Joossens M, Raes J, Vermeire S, Matthijnssens J.

Gut. 2018 Aug;67(8):1558-1559. doi: 10.1136/gutjnl-2017-315281. Epub 2017 Oct 24. No abstract available.


Identification of an enterovirus recombinant with a torovirus-like gene insertion during a diarrhea outbreak in fattening pigs.

Conceição-Neto N, Theuns S, Cui T, Zeller M, Yinda CK, Christiaens I, Heylen E, Van Ranst M, Carpentier S, Nauwynck HJ, Matthijnssens J.

Virus Evol. 2017 Sep 8;3(2):vex024. doi: 10.1093/ve/vex024. eCollection 2017 Jul.


A18 Random amplification with next-generation sequencing to cover HIV and HCV full-length genomes.

Cuypers L, Conceição-Neto N, Dierickx T, Schrooten Y, Vrancken B, Van Wijngaerden E, Nevens F, Vandamme AM, Matthijnssens J, Van Laethem K.

Virus Evol. 2017 Mar 5;3(Suppl 1). pii: vew036.017. doi: 10.1093/ve/vew036.017. eCollection 2017 Mar. No abstract available.


Viral gut metagenomics of sympatric wild and domestic canids, and monitoring of viruses: Insights from an endangered wolf population.

Conceição-Neto N, Godinho R, Álvares F, Yinda CK, Deboutte W, Zeller M, Laenen L, Heylen E, Roque S, Petrucci-Fonseca F, Santos N, Van Ranst M, Mesquita JR, Matthijnssens J.

Ecol Evol. 2017 Apr 27;7(12):4135-4146. doi: 10.1002/ece3.2991. eCollection 2017 Jun.


Novel highly divergent sapoviruses detected by metagenomics analysis in straw-colored fruit bats in Cameroon.

Yinda CK, Conceição-Neto N, Zeller M, Heylen E, Maes P, Ghogomu SM, Van Ranst M, Matthijnssens J.

Emerg Microbes Infect. 2017 May 24;6(5):e38. doi: 10.1038/emi.2017.20.


Group A Rotaviruses in Chinese Bats: Genetic Composition, Serology, and Evidence for Bat-to-Human Transmission and Reassortment.

He B, Huang X, Zhang F, Tan W, Matthijnssens J, Qin S, Xu L, Zhao Z, Yang L, Wang Q, Hu T, Bao X, Wu J, Tu C.

J Virol. 2017 May 26;91(12). pii: e02493-16. doi: 10.1128/JVI.02493-16. Print 2017 Jun 15.


Highly diverse population of Picornaviridae and other members of the Picornavirales, in Cameroonian fruit bats.

Yinda CK, Zell R, Deboutte W, Zeller M, Conceição-Neto N, Heylen E, Maes P, Knowles NJ, Ghogomu SM, Van Ranst M, Matthijnssens J.

BMC Genomics. 2017 Mar 23;18(1):249. doi: 10.1186/s12864-017-3632-7.


Comparative analysis of the Rotarix™ vaccine strain and G1P[8] rotaviruses detected before and after vaccine introduction in Belgium.

Zeller M, Heylen E, Tamim S, McAllen JK, Kirkness EF, Akopov A, De Coster S, Van Ranst M, Matthijnssens J.

PeerJ. 2017 Jan 3;5:e2733. doi: 10.7717/peerj.2733. eCollection 2017.


Erratum: Emergence of human G2P[4] rotaviruses containing animal derived gene segments in the post-vaccine era.

Zeller M, Nuyts V, Heylen E, Coster S, Conceição-Neto N, Ranst MV, Matthijnssens J.

Sci Rep. 2017 Jan 3;7:39436. doi: 10.1038/srep39436. No abstract available.


Emergence of human G2P[4] rotaviruses containing animal derived gene segments in the post-vaccine era.

Zeller M, Nuyts V, Heylen E, De Coster S, Conceição-Neto N, Van Ranst M, Matthijnssens J.

Sci Rep. 2016 Nov 14;6:36841. doi: 10.1038/srep36841. Erratum in: Sci Rep. 2017 Jan 03;7:39436.


Novel highly divergent reassortant bat rotaviruses in Cameroon, without evidence of zoonosis.

Yinda CK, Zeller M, Conceição-Neto N, Maes P, Deboutte W, Beller L, Heylen E, Ghogomu SM, Van Ranst M, Matthijnssens J.

Sci Rep. 2016 Sep 26;6:34209. doi: 10.1038/srep34209.


Human P[6] Rotaviruses From Sub-Saharan Africa and Southeast Asia Are Closely Related to Those of Human P[4] and P[8] Rotaviruses Circulating Worldwide.

Heylen E, Zeller M, Ciarlet M, Lawrence J, Steele D, Van Ranst M, Matthijnssens J.

J Infect Dis. 2016 Oct 1;214(7):1039-49. doi: 10.1093/infdis/jiw247. Epub 2016 Jul 28.


Reassortment among picobirnaviruses found in wolves.

Conceição-Neto N, Mesquita JR, Zeller M, Yinda CK, Álvares F, Roque S, Petrucci-Fonseca F, Godinho R, Heylen E, Van Ranst M, Matthijnssens J.

Arch Virol. 2016 Oct;161(10):2859-62. doi: 10.1007/s00705-016-2987-4. Epub 2016 Jul 20.


Whole genomic characterization of Korean porcine G8P[7] reassortant rotaviruses.

Park JG, Park SI, Woo NI, Kim DS, Seo JY, Alfajaro MM, Kim JY, Soliman M, Baek YB, Cho EH, Kwon J, Choi JS, Kang MI, Matthijnssens J, Cho KO.

Arch Virol. 2016 Oct;161(10):2835-41. doi: 10.1007/s00705-016-2945-1. Epub 2016 Jul 9.


Characterization of a genetically heterogeneous porcine rotavirus C, and other viruses present in the fecal virome of a non-diarrheic Belgian piglet.

Theuns S, Conceição-Neto N, Zeller M, Heylen E, Roukaerts ID, Desmarets LM, Van Ranst M, Nauwynck HJ, Matthijnssens J.

Infect Genet Evol. 2016 Sep;43:135-45. doi: 10.1016/j.meegid.2016.05.018. Epub 2016 May 14.


Molecular detection of bovine Noroviruses in Argentinean dairy calves: Circulation of a tentative new genotype.

Ferragut F, Vega CG, Mauroy A, Conceição-Neto N, Zeller M, Heylen E, Uriarte EL, Bilbao G, Bok M, Matthijnssens J, Thiry E, Badaracco A, Parreño V.

Infect Genet Evol. 2016 Jun;40:144-150. doi: 10.1016/j.meegid.2016.02.034. Epub 2016 Mar 3.


Experimental feline enteric coronavirus infection reveals an aberrant infection pattern and shedding of mutants with impaired infectivity in enterocyte cultures.

Desmarets LM, Vermeulen BL, Theuns S, Conceição-Neto N, Zeller M, Roukaerts ID, Acar DD, Olyslaegers DA, Van Ranst M, Matthijnssens J, Nauwynck HJ.

Sci Rep. 2016 Jan 29;6:20022. doi: 10.1038/srep20022.


Did Large-Scale Vaccination Drive Changes in the Circulating Rotavirus Population in Belgium?

Pitzer VE, Bilcke J, Heylen E, Crawford FW, Callens M, De Smet F, Van Ranst M, Zeller M, Matthijnssens J.

Sci Rep. 2015 Dec 21;5:18585. doi: 10.1038/srep18585.


Presence and characterization of pig group A and C rotaviruses in feces of Belgian diarrheic suckling piglets.

Theuns S, Vyt P, Desmarets LMB, Roukaerts IDM, Heylen E, Zeller M, Matthijnssens J, Nauwynck HJ.

Virus Res. 2016 Feb 2;213:172-183. doi: 10.1016/j.virusres.2015.12.004. Epub 2015 Dec 8.


Complete genome analyses of the first porcine rotavirus group H identified from a South African pig does not provide evidence for recent interspecies transmission events.

Nyaga MM, Peenze I, Potgieter CA, Seheri LM, Page NA, Yinda CK, Steele AD, Matthijnssens J, Mphahlele MJ.

Infect Genet Evol. 2016 Mar;38:1-7. doi: 10.1016/j.meegid.2015.11.032. Epub 2015 Nov 30.


Modular approach to customise sample preparation procedures for viral metagenomics: a reproducible protocol for virome analysis.

Conceição-Neto N, Zeller M, Lefrère H, De Bruyn P, Beller L, Deboutte W, Yinda CK, Lavigne R, Maes P, Van Ranst M, Heylen E, Matthijnssens J.

Sci Rep. 2015 Nov 12;5:16532. doi: 10.1038/srep16532.


Comparative analysis of pentavalent rotavirus vaccine strains and G8 rotaviruses identified during vaccine trial in Africa.

Heylen E, Zeller M, Ciarlet M, Lawrence J, Steele D, Van Ranst M, Matthijnssens J.

Sci Rep. 2015 Oct 6;5:14658. doi: 10.1038/srep14658.


Canine rotavirus C strain detected in Hungary shows marked genotype diversity.

Marton S, Mihalov-Kovács E, Dóró R, Csata T, Fehér E, Oldal M, Jakab F, Matthijnssens J, Martella V, Bányai K.

J Gen Virol. 2015 Oct;96(10):3059-71. doi: 10.1099/jgv.0.000237. Epub 2015 Jul 9.


Genetic Characterization of the Belgian Nephropathogenic Infectious Bronchitis Virus (NIBV) Reference Strain B1648.

Reddy VR, Theuns S, Roukaerts ID, Zeller M, Matthijnssens J, Nauwynck HJ.

Viruses. 2015 Aug 7;7(8):4488-506. doi: 10.3390/v7082827.


Genome-Wide Evolutionary Analyses of G1P[8] Strains Isolated Before and After Rotavirus Vaccine Introduction.

Zeller M, Donato C, Trovão NS, Cowley D, Heylen E, Donker NC, McAllen JK, Akopov A, Kirkness EF, Lemey P, Van Ranst M, Matthijnssens J, Kirkwood CD.

Genome Biol Evol. 2015 Aug 8;7(9):2473-83. doi: 10.1093/gbe/evv157.


Complete genome sequence of a porcine epidemic diarrhea virus from a novel outbreak in belgium, january 2015.

Theuns S, Conceição-Neto N, Christiaens I, Zeller M, Desmarets LM, Roukaerts ID, Acar DD, Heylen E, Matthijnssens J, Nauwynck HJ.

Genome Announc. 2015 May 21;3(3). pii: e00506-15. doi: 10.1128/genomeA.00506-15.


Fecal virome analysis of three carnivores reveals a novel nodavirus and multiple gemycircularviruses.

Conceição-Neto N, Zeller M, Heylen E, Lefrère H, Mesquita JR, Matthijnssens J.

Virol J. 2015 May 20;12:79. doi: 10.1186/s12985-015-0305-5.


Emerging OP354-Like P[8] Rotaviruses Have Rapidly Dispersed from Asia to Other Continents.

Zeller M, Heylen E, Damanka S, Pietsch C, Donato C, Tamura T, Kulkarni R, Arora R, Cunliffe N, Maunula L, Potgieter C, Tamim S, Coster SD, Zhirakovskaya E, Bdour S, O'Shea H, Kirkwood CD, Seheri M, Nyaga MM, Mphahlele J, Chitambar SD, Dagan R, Armah G, Tikunova N, Van Ranst M, Matthijnssens J.

Mol Biol Evol. 2015 Aug;32(8):2060-71. doi: 10.1093/molbev/msv088. Epub 2015 Apr 8.


Complete genome analysis of a rabbit rotavirus causing gastroenteritis in a human infant.

Bonica MB, Zeller M, Van Ranst M, Matthijnssens J, Heylen E.

Viruses. 2015 Feb 17;7(2):844-56. doi: 10.3390/v7020844.


Enteric viral infection in human and animal.

Malik YS, Matthijnssens J.

Virusdisease. 2014;25(2):145-6. doi: 10.1007/s13337-014-0224-x. No abstract available.


Molecular characterization of equine rotaviruses isolated in Europe in 2013: implications for vaccination.

Matthijnssens J, Ons E, De Coster S, Conceição-Neto N, Gryspeerdt A, Van Ranst M, Raue R.

Vet Microbiol. 2015 Mar 23;176(1-2):179-85. doi: 10.1016/j.vetmic.2015.01.011. Epub 2015 Jan 16.


Genetic diversity in three bovine-like human G8P[14] and G10P[14] rotaviruses suggests independent interspecies transmission events.

Medici MC, Tummolo F, Bonica MB, Heylen E, Zeller M, Calderaro A, Matthijnssens J.

J Gen Virol. 2015 May;96(Pt 5):1161-8. doi: 10.1099/vir.0.000055. Epub 2015 Jan 22.


Genetic diversity of the VP7, VP4 and VP6 genes of Korean porcine group C rotaviruses.

Jeong YJ, Matthijnssens J, Kim DS, Kim JY, Alfajaro MM, Park JG, Hosmillo M, Son KY, Soliman M, Baek YB, Kwon J, Choi JS, Kang MI, Cho KO.

Vet Microbiol. 2015 Mar 23;176(1-2):61-9. doi: 10.1016/j.vetmic.2014.12.024. Epub 2015 Jan 4.


Complete genome characterization of recent and ancient Belgian pig group A rotaviruses and assessment of their evolutionary relationship with human rotaviruses.

Theuns S, Heylen E, Zeller M, Roukaerts ID, Desmarets LM, Van Ranst M, Nauwynck HJ, Matthijnssens J.

J Virol. 2015 Jan 15;89(2):1043-57. doi: 10.1128/JVI.02513-14. Epub 2014 Nov 5.


Differences in lineage replacement dynamics of G1 and G2 rotavirus strains versus G9 strain over a period of 22 years in Bangladesh.

Afrad MH, Matthijnssens J, Afroz SF, Rudra P, Nahar L, Rahman R, Hossain ME, Rahman SR, Azim T, Rahman M.

Infect Genet Evol. 2014 Dec;28:214-22. doi: 10.1016/j.meegid.2014.10.002. Epub 2014 Oct 11.


Complete genome sequence of equid herpesvirus 3.

Sijmons S, Vissani A, Tordoya MS, Muylkens B, Thiry E, Maes P, Matthijnssens J, Barrandeguy M, Van Ranst M.

Genome Announc. 2014 Oct 2;2(5). pii: e00797-14. doi: 10.1128/genomeA.00797-14.


Prevalence and genomic characterization of G2P[4] group A rotavirus strains during monovalent vaccine introduction in Brazil.

Gómez MM, Carvalho-Costa FA, Volotão Ede M, Rose TL, da Silva MF, Fialho AM, Assis RM, de Andrade Jda S, Sá AC, Zeller M, Heylen E, Matthijnssens J, Leite JP.

Infect Genet Evol. 2014 Dec;28:486-94. doi: 10.1016/j.meegid.2014.09.012. Epub 2014 Sep 17.


The complete genome sequence of a G3P[10] Chinese bat rotavirus suggests multiple bat rotavirus inter-host species transmission events.

Xia L, Fan Q, He B, Xu L, Zhang F, Hu T, Wang Y, Li N, Qiu W, Zheng Y, Matthijnssens J, Tu C.

Infect Genet Evol. 2014 Dec;28:1-4. doi: 10.1016/j.meegid.2014.09.005. Epub 2014 Sep 9. No abstract available.


Rapid detection and high occurrence of porcine rotavirus A, B, and C by RT-qPCR in diagnostic samples.

Marthaler D, Homwong N, Rossow K, Culhane M, Goyal S, Collins J, Matthijnssens J, Ciarlet M.

J Virol Methods. 2014 Dec;209:30-4. doi: 10.1016/j.jviromet.2014.08.018. Epub 2014 Sep 4.


VP6 genetic diversity, reassortment, intragenic recombination and classification of rotavirus B in American and Japanese pigs.

Marthaler D, Suzuki T, Rossow K, Culhane M, Collins J, Goyal S, Tsunemitsu H, Ciarlet M, Matthijnssens J.

Vet Microbiol. 2014 Aug 27;172(3-4):359-66. doi: 10.1016/j.vetmic.2014.05.015. Epub 2014 Jun 2.


Rotavirus surveillance in Kisangani, the Democratic Republic of the Congo, reveals a high number of unusual genotypes and gene segments of animal origin in non-vaccinated symptomatic children.

Heylen E, Batoko Likele B, Zeller M, Stevens S, De Coster S, Conceição-Neto N, Van Geet C, Jacobs J, Ngbonda D, Van Ranst M, Matthijnssens J.

PLoS One. 2014 Jun 26;9(6):e100953. doi: 10.1371/journal.pone.0100953. eCollection 2014.


Widespread rotavirus H in commercially raised pigs, United States.

Marthaler D, Rossow K, Culhane M, Goyal S, Collins J, Matthijnssens J, Nelson M, Ciarlet M.

Emerg Infect Dis. 2014 Jul;20(7):1195-8. doi: 10.3201/eid2007.140034.

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