Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 93

1.

Analysis of the genome sequence of Phomopsis longicolla: a fungal pathogen causing Phomopsis seed decay in soybean.

Li S, Darwish O, Alkharouf NW, Musungu B, Matthews BF.

BMC Genomics. 2017 Sep 5;18(1):688. doi: 10.1186/s12864-017-4075-x.

2.

Regulatory interplay between soybean root and soybean cyst nematode during a resistant and susceptible reaction.

Hosseini P, Matthews BF.

BMC Plant Biol. 2014 Nov 25;14:300. doi: 10.1186/s12870-014-0300-9.

3.

SoyProLow: A protein database enriched in low abundant soybean proteins.

Tavakolan M, Alkharouf NW, Matthews BF, Natarajan SS.

Bioinformation. 2014 Sep 30;10(9):599-601. doi: 10.6026/97320630010599. eCollection 2014.

4.

SCNProDB: A database for the identification of soybean cyst nematode proteins.

Natarajan S, Tavakolan M, Alkharouf NW, Matthews BF.

Bioinformation. 2014 Jun 30;10(6):387-9. doi: 10.6026/97320630010387. eCollection 2014.

5.

Manipulation of two α-endo-β-1,4-glucanase genes, AtCel6 and GmCel7, reduces susceptibility to Heterodera glycines in soybean roots.

Woo MO, Beard H, MacDonald MH, Brewer EP, Youssef RM, Kim H, Matthews BF.

Mol Plant Pathol. 2014 Dec;15(9):927-39. doi: 10.1111/mpp.12157. Epub 2014 Jul 7.

6.

Floral Transcriptomes in Woodland Strawberry Uncover Developing Receptacle and Anther Gene Networks.

Hollender CA, Kang C, Darwish O, Geretz A, Matthews BF, Slovin J, Alkharouf N, Liu Z.

Plant Physiol. 2014 Jul;165(3):1062-1075. Epub 2014 May 14.

7.

Arabidopsis genes, AtNPR1, AtTGA2 and AtPR-5, confer partial resistance to soybean cyst nematode (Heterodera glycines) when overexpressed in transgenic soybean roots.

Matthews BF, Beard H, Brewer E, Kabir S, MacDonald MH, Youssef RM.

BMC Plant Biol. 2014 Apr 16;14:96. doi: 10.1186/1471-2229-14-96.

8.

Analysis of Phakopsora pachyrhizi transcript abundance in critical pathways at four time-points during infection of a susceptible soybean cultivar using deep sequencing.

Tremblay A, Hosseini P, Li S, Alkharouf NW, Matthews BF.

BMC Genomics. 2013 Sep 11;14:614. doi: 10.1186/1471-2164-14-614.

9.

Ectopic expression of AtPAD4 broadens resistance of soybean to soybean cyst and root-knot nematodes.

Youssef RM, MacDonald MH, Brewer EP, Bauchan GR, Kim KH, Matthews BF.

BMC Plant Biol. 2013 Apr 25;13:67. doi: 10.1186/1471-2229-13-67.

10.

Using an ensemble of statistical metrics to quantify large sets of plant transcription factor binding sites.

Hosseini P, Ovcharenko I, Matthews BF.

Plant Methods. 2013 Apr 11;9(1):12. doi: 10.1186/1746-4811-9-12.

11.

Post-transcriptional gene silencing of the gene encoding aldolase from soybean cyst nematode by transformed soybean roots.

Youssef RM, Kim KH, Haroon SA, Matthews BF.

Exp Parasitol. 2013 Jun;134(2):266-74. doi: 10.1016/j.exppara.2013.03.009. Epub 2013 Mar 27.

PMID:
23541467
12.

Engineered resistance and hypersusceptibility through functional metabolic studies of 100 genes in soybean to its major pathogen, the soybean cyst nematode.

Matthews BF, Beard H, MacDonald MH, Kabir S, Youssef RM, Hosseini P, Brewer E.

Planta. 2013 May;237(5):1337-57. doi: 10.1007/s00425-013-1840-1. Epub 2013 Feb 7.

13.

The pJan25 vector series: an enhancement of the Gateway-compatible vector pGWB533 for broader promoter testing applications.

Alzohairy AM, MacDonald MH, Matthews BF.

Plasmid. 2013 May;69(3):249-56. doi: 10.1016/j.plasmid.2013.01.005. Epub 2013 Jan 23.

PMID:
23353052
14.

RKN Lethal DB: A database for the identification of Root Knot Nematode (Meloidogyne spp.) candidate lethal genes.

Ismail A, Matthews BF, Alkharouf NW.

Bioinformation. 2012;8(19):950-2. doi: 10.6026/97320630008950. Epub 2012 Oct 1.

15.

The expression of a naturally occurring, truncated allele of an α-SNAP gene suppresses plant parasitic nematode infection.

Matsye PD, Lawrence GW, Youssef RM, Kim KH, Lawrence KS, Matthews BF, Klink VP.

Plant Mol Biol. 2012 Sep;80(2):131-55. doi: 10.1007/s11103-012-9932-z. Epub 2012 Jun 12.

PMID:
22689004
16.

MAPT and PAICE: Tools for time series and single time point transcriptionist visualization and knowledge discovery.

Hosseini P, Tremblay A, Matthews BF, Alkharouf NW.

Bioinformation. 2012;8(6):287-9. doi: 10.6026/97320630008287. Epub 2012 Mar 31.

17.

Two-dimensional proteome reference maps for the soybean cyst nematode Heterodera glycines.

Chen X, MacDonald MH, Khan F, Garrett WM, Matthews BF, Natarajan SS.

Proteomics. 2011 Dec;11(24):4742-6. doi: 10.1002/pmic.201100220. Epub 2011 Nov 23.

PMID:
22038885
18.

Mapping cell fate decisions that occur during soybean defense responses.

Matsye PD, Kumar R, Hosseini P, Jones CM, Tremblay A, Alkharouf NW, Matthews BF, Klink VP.

Plant Mol Biol. 2011 Nov;77(4-5):513-28. doi: 10.1007/s11103-011-9828-3. Epub 2011 Oct 11.

PMID:
21986905
19.

Analysis of gene expression in soybean (Glycine max) roots in response to the root knot nematode Meloidogyne incognita using microarrays and KEGG pathways.

Ibrahim HM, Hosseini P, Alkharouf NW, Hussein EH, Gamal El-Din Ael K, Aly MA, Matthews BF.

BMC Genomics. 2011 May 10;12:220. doi: 10.1186/1471-2164-12-220.

20.

Overexpression of the mitogen-activated protein kinase gene OsMAPK33 enhances sensitivity to salt stress in rice (Oryza sativa L.).

Lee SK, Kim BG, Kwon TR, Jeong MJ, Park SR, Lee JW, Byun MO, Kwon HB, Matthews BF, Hong CB, Park SC.

J Biosci. 2011 Mar;36(1):139-51.

22.

Post-transcriptional gene silencing of root-knot nematode in transformed soybean roots.

Ibrahim HM, Alkharouf NW, Meyer SL, Aly MA, Gamal El-Din Ael K, Hussein EH, Matthews BF.

Exp Parasitol. 2011 Jan;127(1):90-9. doi: 10.1016/j.exppara.2010.06.037. Epub 2010 Jul 3.

PMID:
20599433
23.

An efficient annotation and gene-expression derivation tool for Illumina Solexa datasets.

Hosseini P, Tremblay A, Matthews BF, Alkharouf NW.

BMC Res Notes. 2010 Jul 2;3:183. doi: 10.1186/1756-0500-3-183.

25.

Syncytium gene expression in Glycine max([PI 88788]) roots undergoing a resistant reaction to the parasitic nematode Heterodera glycines.

Klink VP, Hosseini P, Matsye PD, Alkharouf NW, Matthews BF.

Plant Physiol Biochem. 2010 Feb-Mar;48(2-3):176-93. doi: 10.1016/j.plaphy.2009.12.003. Epub 2010 Jan 4.

PMID:
20138530
26.

A gene expression analysis of syncytia laser microdissected from the roots of the Glycine max (soybean) genotype PI 548402 (Peking) undergoing a resistant reaction after infection by Heterodera glycines (soybean cyst nematode).

Klink VP, Hosseini P, Matsye P, Alkharouf NW, Matthews BF.

Plant Mol Biol. 2009 Dec;71(6):525-67. doi: 10.1007/s11103-009-9539-1. Epub 2009 Sep 29.

PMID:
19787434
27.

Emerging approaches to broaden resistance of soybean to soybean cyst nematode as supported by gene expression studies.

Klink VP, Matthews BF.

Plant Physiol. 2009 Nov;151(3):1017-22. doi: 10.1104/pp.109.144006. Epub 2009 Aug 12. Review. No abstract available.

28.

A correlation between host-mediated expression of parasite genes as tandem inverted repeats and abrogation of development of female Heterodera glycines cyst formation during infection of Glycine max.

Klink VP, Kim KH, Martins V, Macdonald MH, Beard HS, Alkharouf NW, Lee SK, Park SC, Matthews BF.

Planta. 2009 Jun;230(1):53-71. doi: 10.1007/s00425-009-0926-2. Epub 2009 Apr 4.

PMID:
19347355
30.
31.

Expression patterns in soybean resistant to Phakopsora pachyrhizi reveal the importance of peroxidases and lipoxygenases.

Choi JJ, Alkharouf NW, Schneider KT, Matthews BF, Frederick RD.

Funct Integr Genomics. 2008 Nov;8(4):341-59. doi: 10.1007/s10142-008-0080-0. Epub 2008 Apr 15.

PMID:
18414911
34.

A time-course comparative microarray analysis of an incompatible and compatible response by Glycine max (soybean) to Heterodera glycines (soybean cyst nematode) infection.

Klink VP, Overall CC, Alkharouf NW, MacDonald MH, Matthews BF.

Planta. 2007 Nov;226(6):1423-47. Epub 2007 Jul 25.

PMID:
17653570
35.
36.

BBGD: an online database for blueberry genomic data.

Alkharouf NW, Dhanaraj AL, Naik D, Overall C, Matthews BF, Rowland LJ.

BMC Plant Biol. 2007 Jan 30;7:5.

37.

Developing a systems biology approach to study disease progression caused by Heterodera glycines in Glycine max.

Klink VP, Overall CC, Matthews BF.

Gene Regul Syst Bio. 2007 Jun 5;1:17-33. No abstract available.

38.
39.

Major differences observed in transcript profiles of blueberry during cold acclimation under field and cold room conditions.

Dhanaraj AL, Alkharouf NW, Beard HS, Chouikha IB, Matthews BF, Wei H, Arora R, Rowland LJ.

Planta. 2007 Feb;225(3):735-51. Epub 2006 Sep 5.

PMID:
16953429
40.

Timecourse microarray analyses reveal global changes in gene expression of susceptible Glycine max (soybean) roots during infection by Heterodera glycines (soybean cyst nematode).

Alkharouf NW, Klink VP, Chouikha IB, Beard HS, MacDonald MH, Meyer S, Knap HT, Khan R, Matthews BF.

Planta. 2006 Sep;224(4):838-52. Epub 2006 Mar 31.

PMID:
16575592
41.

Online analytical processing (OLAP): a fast and effective data mining tool for gene expression databases.

Alkharouf NW, Jamison DC, Matthews BF.

J Biomed Biotechnol. 2005 Jun 30;2005(2):181-8.

42.
43.

SGMD: the Soybean Genomics and Microarray Database.

Alkharouf NW, Matthews BF.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D398-400.

44.

Ascaris suum: cDNA microarray analysis of 4th stage larvae (L4) during self-cure from the intestine.

Morimoto M, Zarlenga D, Beard H, Alkharouf N, Matthews BF, Urban JF Jr.

Exp Parasitol. 2003 Jul-Aug;104(3-4):113-21.

PMID:
14552858
45.

Molecular Characterization of Arginine Kinases in the Soybean Cyst Nematode (Heterodera glycines).

Matthews BF, Macdonald MH, Thai VK, Tucker ML.

J Nematol. 2003 Sep;35(3):252-8.

46.

Profiling local gene expression changes associated with Eimeria maxima and Eimeria acervulina using cDNA microarray.

Min W, Lillehoj HS, Kim S, Zhu JJ, Beard H, Alkharouf N, Matthews BF.

Appl Microbiol Biotechnol. 2003 Sep;62(4):392-9. Epub 2003 Apr 24.

PMID:
12712262
47.

Physical mapping of resistant and susceptible soybean genomes near the soybean cyst nematode resistance gene Rhg4.

Lewers KS, Nilmalgoda SD, Warner AL, Knap HT, Matthews BF.

Genome. 2001 Dec;44(6):1057-64.

PMID:
11768209
48.

Detection of plant genes using a rapid, nonorganic DNA purification method.

Lin JJ, Fleming R, Kuo J, Matthews BF, Saunders JA.

Biotechniques. 2000 Feb;28(2):346-50.

49.

Characterization of a single soybean cDNA encoding cytosolic and glyoxysomal isozymes of aspartate aminotransferase.

Gebhardt JS, Wadsworth GJ, Matthews BF.

Plant Mol Biol. 1998 May;37(1):99-108.

PMID:
9620268
50.

Soybean DapA mutations encoding lysine-insensitive dihydrodipicolinate synthase.

Silk GW, Matthews BF.

Plant Mol Biol. 1997 Mar;33(5):931-3.

PMID:
9106516

Supplemental Content

Loading ...
Support Center