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Items: 1 to 50 of 167

1.

Editorial.

Matsudaira PT, Verma CS.

Prog Biophys Mol Biol. 2019 May;143:1-4. doi: 10.1016/j.pbiomolbio.2019.03.008. Epub 2019 Apr 3. No abstract available.

PMID:
30951764
2.

Near-common-path interferometer for imaging Fourier-transform spectroscopy in wide-field microscopy.

Wadduwage DN, Singh VR, Choi H, Yaqoob Z, Heemskerk H, Matsudaira P, So PTC.

Optica. 2017 May 20;4(5):546-556. doi: 10.1364/OPTICA.4.000546.

3.

Higher order structures of Adalimumab, Infliximab and their complexes with TNFα revealed by electron microscopy.

Tran BN, Chan SL, Ng C, Shi J, Correia I, Radziejewski C, Matsudaira P.

Protein Sci. 2017 Dec;26(12):2392-2398. doi: 10.1002/pro.3306. Epub 2017 Nov 14.

4.

Epithelial Monolayers Coalesce on a Viscoelastic Substrate through Redistribution of Vinculin.

Zheng JY, Han SP, Chiu YJ, Yip AK, Boichat N, Zhu SW, Zhong J, Matsudaira P.

Biophys J. 2017 Oct 3;113(7):1585-1598. doi: 10.1016/j.bpj.2017.07.027. Epub 2017 Aug 24.

5.

A method to quantify co-localization in biological images.

Shiwen Zhu, Welsch RE, Matsudaira PT.

Conf Proc IEEE Eng Med Biol Soc. 2016 Aug;2016:3887-3890. doi: 10.1109/EMBC.2016.7591577.

PMID:
28269135
6.

Direct measurement of Vorticella contraction force by micropipette deflection.

France D, Tejada J, Matsudaira P.

FEBS Lett. 2017 Feb;591(4):581-589. doi: 10.1002/1873-3468.12577. Epub 2017 Feb 17.

7.

Excess reactive oxygen species production mediates monoclonal antibody-induced human embryonic stem cell death via oncosis.

Zheng JY, Tan HL, Matsudaira PT, Choo A.

Cell Death Differ. 2017 Mar;24(3):546-558. doi: 10.1038/cdd.2016.164. Epub 2017 Jan 20.

8.

Podosome assembly is controlled by the GTPase ARF1 and its nucleotide exchange factor ARNO.

Rafiq NB, Lieu ZZ, Jiang T, Yu CH, Matsudaira P, Jones GE, Bershadsky AD.

J Cell Biol. 2017 Jan 2;216(1):181-197. doi: 10.1083/jcb.201605104. Epub 2016 Dec 22.

9.

Multistep nucleation of nanocrystals in aqueous solution.

Loh ND, Sen S, Bosman M, Tan SF, Zhong J, Nijhuis CA, Král P, Matsudaira P, Mirsaidov U.

Nat Chem. 2017 Jan;9(1):77-82. doi: 10.1038/nchem.2618. Epub 2016 Oct 3.

PMID:
27995918
10.

Differential Spleen Remodeling Associated with Different Levels of Parasite Virulence Controls Disease Outcome in Malaria Parasite Infections.

Huang X, Huang S, Ong LC, Lim JC, Hurst RJ, Mushunje AT, Matsudaira PT, Han J, Preiser PR.

mSphere. 2015 Dec 9;1(1). pii: e00018-15. doi: 10.1128/mSphere.00018-15. eCollection 2016 Jan-Feb.

11.

Mechanobiology.

Shivashankar GV, Sheetz M, Matsudaira P.

Integr Biol (Camb). 2015 Oct;7(10):1091-2. doi: 10.1039/c5ib90040a. Epub 2015 Sep 25. No abstract available.

PMID:
26404492
12.
13.

Talbot holographic illumination nonscanning (THIN) fluorescence microscopy.

Luo Y, Singh VR, Bhattacharya D, Yew EYS, Tsai JC, Yu SL, Chen HH, Wong JM, Matsudaira P, So PTC, Barbastathis G.

Laser Photon Rev. 2014 Sep;8(5):L71-L75. doi: 10.1002/lpor.201400053. Epub 2014 Aug 8.

14.

Depth resolved hyperspectral imaging spectrometer based on structured light illumination and Fourier transform interferometry.

Choi H, Wadduwage D, Matsudaira PT, So PT.

Biomed Opt Express. 2014 Sep 9;5(10):3494-507. doi: 10.1364/BOE.5.003494. eCollection 2014 Oct 1.

15.

Three-dimensional image cytometer based on widefield structured light microscopy and high-speed remote depth scanning.

Choi H, Wadduwage DN, Tu TY, Matsudaira P, So PT.

Cytometry A. 2015 Jan;87(1):49-60. doi: 10.1002/cyto.a.22584. Epub 2014 Oct 28.

16.

Coactivators p300 and CBP maintain the identity of mouse embryonic stem cells by mediating long-range chromatin structure.

Fang F, Xu Y, Chew KK, Chen X, Ng HH, Matsudaira P.

Stem Cells. 2014 Jul;32(7):1805-16. doi: 10.1002/stem.1705.

17.

Scrolling graphene into nanofluidic channels.

Mirsaidov U, Mokkapati VR, Bhattacharya D, Andersen H, Bosman M, Özyilmaz B, Matsudaira P.

Lab Chip. 2013 Aug 7;13(15):2874-8. doi: 10.1039/c3lc50304f.

PMID:
23702655
18.

Three dimensional HiLo-based structured illumination for a digital scanned laser sheet microscopy (DSLM) in thick tissue imaging.

Bhattacharya D, Singh VR, Zhi C, So PT, Matsudaira P, Barbastathis G.

Opt Express. 2012 Dec 3;20(25):27337-47. doi: 10.1364/OE.20.027337.

19.

Protein array patterning by diffusive gel stamping.

Anwar M, Gupta PB, Palaniapan R, Matsudaira P.

PLoS One. 2012;7(10):e46382. doi: 10.1371/journal.pone.0046382. Epub 2012 Oct 10.

20.

Electron beam manipulation of nanoparticles.

Zheng H, Mirsaidov UM, Wang LW, Matsudaira P.

Nano Lett. 2012 Nov 14;12(11):5644-8. doi: 10.1021/nl302788g. Epub 2012 Oct 9.

PMID:
23035740
21.

Maximal force characteristics of the Ca(2+)-powered actuator of Vorticella convallaria.

Ryu S, Lang MJ, Matsudaira P.

Biophys J. 2012 Sep 5;103(5):860-7.

22.

Direct observation of stick-slip movements of water nanodroplets induced by an electron beam.

Mirsaidov UM, Zheng H, Bhattacharya D, Casana Y, Matsudaira P.

Proc Natl Acad Sci U S A. 2012 May 8;109(19):7187-90. doi: 10.1073/pnas.1200457109. Epub 2012 Apr 18.

23.

Imaging protein structure in water at 2.7 nm resolution by transmission electron microscopy.

Mirsaidov UM, Zheng H, Casana Y, Matsudaira P.

Biophys J. 2012 Feb 22;102(4):L15-7. doi: 10.1016/j.bpj.2012.01.009. Epub 2012 Feb 21.

24.

Correlation of cell membrane dynamics and cell motility.

Veronika M, Welsch R, Ng A, Matsudaira P, Rajapakse JC.

BMC Bioinformatics. 2011;12 Suppl 13:S19. doi: 10.1186/1471-2105-12-S13-S19. Epub 2011 Nov 30.

25.

Self-aligned wet-cell for hydrated microbiology observation in TEM.

Huang TW, Liu SY, Chuang YJ, Hsieh HY, Tsai CY, Huang YT, Mirsaidov U, Matsudaira P, Tseng FG, Chang CS, Chen FR.

Lab Chip. 2012 Jan 21;12(2):340-7. doi: 10.1039/c1lc20647h. Epub 2011 Nov 30.

PMID:
22130521
26.

Tension, free space, and cell damage in a microfluidic wound healing assay.

Murrell M, Kamm R, Matsudaira P.

PLoS One. 2011;6(9):e24283. doi: 10.1371/journal.pone.0024283. Epub 2011 Sep 6.

27.

Substrate viscosity enhances correlation in epithelial sheet movement.

Murrell M, Kamm R, Matsudaira P.

Biophys J. 2011 Jul 20;101(2):297-306. doi: 10.1016/j.bpj.2011.05.048.

28.

STORM: a general model to determine the number and adaptive changes of epithelial stem cells in teleost, murine and human intestinal tracts.

Wang Z, Matsudaira P, Gong Z.

PLoS One. 2010 Nov 19;5(11):e14063. doi: 10.1371/journal.pone.0014063.

29.

Morphological and molecular evidence for functional organization along the rostrocaudal axis of the adult zebrafish intestine.

Wang Z, Du J, Lam SH, Mathavan S, Matsudaira P, Gong Z.

BMC Genomics. 2010 Jun 22;11:392. doi: 10.1186/1471-2164-11-392.

30.

A cell profiling framework for modeling drug responses from HCS imaging.

Ng AY, Rajapakse JC, Welsch RE, Matsudaira PT, Horodincu V, Evans JG.

J Biomol Screen. 2010 Aug;15(7):858-68. doi: 10.1177/1087057110372256. Epub 2010 Jun 4.

PMID:
20525958
31.
32.

Chemical control of Vorticella bioactuator using microfluidics.

Nagai M, Ryu S, Thorsen T, Matsudaira P, Fujita H.

Lab Chip. 2010 Jun 21;10(12):1574-8. doi: 10.1039/c003427d. Epub 2010 May 7.

PMID:
20449516
33.

Computational model of cell positioning: directed and collective migration in the intestinal crypt epithelium.

Wong SY, Chiam KH, Lim CT, Matsudaira P.

J R Soc Interface. 2010 Jun 6;7 Suppl 3:S351-63. doi: 10.1098/rsif.2010.0018.focus. Epub 2010 Mar 31.

34.

Sub-population analysis based on temporal features of high content images.

Veronika M, Evans J, Matsudaira P, Welsch R, Rajapakse J.

BMC Bioinformatics. 2009 Dec 3;10 Suppl 15:S4. doi: 10.1186/1471-2105-10-S15-S4.

35.

Nearby boundaries create eddies near microscopic filter feeders.

Pepper RE, Roper M, Ryu S, Matsudaira P, Stone HA.

J R Soc Interface. 2010 May 6;7(46):851-62. doi: 10.1098/rsif.2009.0419. Epub 2009 Nov 26.

36.

Calcium regulation of an actin spring.

Tam BK, Shin JH, Pfeiffer E, Matsudaira P, Mahadevan L.

Biophys J. 2009 Aug 19;97(4):1125-9. doi: 10.1016/j.bpj.2009.02.069.

37.

Jamming prokaryotic cell-to-cell communications in a model biofilm.

Timp W, Mirsaidov U, Matsudaira P, Timp G.

Lab Chip. 2009 Apr 7;9(7):925-34. doi: 10.1039/b810157d. Epub 2008 Dec 11.

PMID:
19294303
38.

Chapter 14: Electron microscopy of hydrated samples.

Timp W, Matsudaira P.

Methods Cell Biol. 2008;89:391-407. doi: 10.1016/S0091-679X(08)00614-6.

PMID:
19118683
39.

Live cell lithography: using optical tweezers to create synthetic tissue.

Mirsaidov U, Scrimgeour J, Timp W, Beck K, Mir M, Matsudaira P, Timp G.

Lab Chip. 2008 Dec;8(12):2174-81. doi: 10.1039/b807987k. Epub 2008 Oct 1.

PMID:
19023484
40.

Optimal optical trap for bacterial viability.

Mirsaidov U, Timp W, Timp K, Mir M, Matsudaira P, Timp G.

Phys Rev E Stat Nonlin Soft Matter Phys. 2008 Aug;78(2 Pt 1):021910. Epub 2008 Aug 25.

PMID:
18850868
41.

Crystallographic conformers of actin in a biologically active bundle of filaments.

Cong Y, Topf M, Sali A, Matsudaira P, Dougherty M, Chiu W, Schmid MF.

J Mol Biol. 2008 Jan 11;375(2):331-6. Epub 2007 Oct 16.

42.

Power-limited contraction dynamics of Vorticella convallaria: an ultrafast biological spring.

Upadhyaya A, Baraban M, Wong J, Matsudaira P, van Oudenaarden A, Mahadevan L.

Biophys J. 2008 Jan 1;94(1):265-72. Epub 2007 Oct 12.

43.

Substituted organosiloxanes as potential therapeutics for treatment and prevention of neurodegenerative diseases.

Friedman OM, Matsudaira P, Reis AH Jr, Simister N, Correia I, Kew D, Wei JY, Pochapsky T.

J Alzheimers Dis. 2007 Jun;11(3):291-300.

PMID:
17851178
44.

Nucleic acid and protein mass mapping by live-cell deep-ultraviolet microscopy.

Zeskind BJ, Jordan CD, Timp W, Trapani L, Waller G, Horodincu V, Ehrlich DJ, Matsudaira P.

Nat Methods. 2007 Jul;4(7):567-9. Epub 2007 Jun 3.

PMID:
17546037
45.

Force of an actin spring.

Shin JH, Tam BK, Brau RR, Lang MJ, Mahadevan L, Matsudaira P.

Biophys J. 2007 May 15;92(10):3729-33. Epub 2007 Mar 9.

46.

Detecting force-induced molecular transitions with fluorescence resonant energy transfer.

Tarsa PB, Brau RR, Barch M, Ferrer JM, Freyzon Y, Matsudaira P, Lang MJ.

Angew Chem Int Ed Engl. 2007;46(12):1999-2001. doi: 10.1002/anie.200604546. No abstract available.

47.

Understanding effects of matrix protease and matrix organization on directional persistence and translational speed in three-dimensional cell migration.

Zaman MH, Matsudaira P, Lauffenburger DA.

Ann Biomed Eng. 2007 Jan;35(1):91-100. Epub 2006 Nov 2.

PMID:
17080315
48.

Wet electron microscopy with quantum dots.

Timp W, Watson N, Sabban A, Zik O, Matsudaira P.

Biotechniques. 2006 Sep;41(3):295-8.

49.

Linking microscopy and high content screening in large-scale biomedical research.

Evans JG, Matsudaira P.

Methods Mol Biol. 2007;356:33-8. Review.

PMID:
16988393
50.

Laser-guided assembly of heterotypic three-dimensional living cell microarrays.

Akselrod GM, Timp W, Mirsaidov U, Zhao Q, Li C, Timp R, Timp K, Matsudaira P, Timp G.

Biophys J. 2006 Nov 1;91(9):3465-73. Epub 2006 Aug 4.

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