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Items: 12

1.

In vitro iCLIP-based modeling uncovers how the splicing factor U2AF2 relies on regulation by cofactors.

Sutandy FXR, Ebersberger S, Huang L, Busch A, Bach M, Kang HS, Fallmann J, Maticzka D, Backofen R, Stadler PF, Zarnack K, Sattler M, Legewie S, König J.

Genome Res. 2018 May;28(5):699-713. doi: 10.1101/gr.229757.117. Epub 2018 Apr 11.

2.

The RNA-binding protein ARPP21 controls dendritic branching by functionally opposing the miRNA it hosts.

Rehfeld F, Maticzka D, Grosser S, Knauff P, Eravci M, Vida I, Backofen R, Wulczyn FG.

Nat Commun. 2018 Mar 26;9(1):1235. doi: 10.1038/s41467-018-03681-3.

3.

uvCLAP is a fast and non-radioactive method to identify in vivo targets of RNA-binding proteins.

Maticzka D, Ilik IA, Aktas T, Backofen R, Akhtar A.

Nat Commun. 2018 Mar 20;9(1):1142. doi: 10.1038/s41467-018-03575-4.

4.

A mutually exclusive stem-loop arrangement in roX2 RNA is essential for X-chromosome regulation in Drosophila.

Ilik IA, Maticzka D, Georgiev P, Gutierrez NM, Backofen R, Akhtar A.

Genes Dev. 2017 Oct 1;31(19):1973-1987. doi: 10.1101/gad.304600.117. Epub 2017 Oct 24.

5.

DHX9 suppresses RNA processing defects originating from the Alu invasion of the human genome.

Aktaş T, Avşar Ilık İ, Maticzka D, Bhardwaj V, Pessoa Rodrigues C, Mittler G, Manke T, Backofen R, Akhtar A.

Nature. 2017 Apr 6;544(7648):115-119. doi: 10.1038/nature21715. Epub 2017 Mar 29.

PMID:
28355180
6.

SimiRa: A tool to identify coregulation between microRNAs and RNA-binding proteins.

Preusse M, Marr C, Saunders S, Maticzka D, Lickert H, Backofen R, Theis F.

RNA Biol. 2015;12(9):998-1009. doi: 10.1080/15476286.2015.1068496.

7.

Lineage-specific splicing of a brain-enriched alternative exon promotes glioblastoma progression.

Ferrarese R, Harsh GR 4th, Yadav AK, Bug E, Maticzka D, Reichardt W, Dombrowski SM, Miller TE, Masilamani AP, Dai F, Kim H, Hadler M, Scholtens DM, Yu IL, Beck J, Srinivasasainagendra V, Costa F, Baxan N, Pfeifer D, von Elverfeldt D, Backofen R, Weyerbrock A, Duarte CW, He X, Prinz M, Chandler JP, Vogel H, Chakravarti A, Rich JN, Carro MS, Bredel M.

J Clin Invest. 2014 Jul;124(7):2861-76. doi: 10.1172/JCI68836. Epub 2014 May 27.

8.

GraphProt: modeling binding preferences of RNA-binding proteins.

Maticzka D, Lange SJ, Costa F, Backofen R.

Genome Biol. 2014 Jan 22;15(1):R17. doi: 10.1186/gb-2014-15-1-r17.

9.

Tandem stem-loops in roX RNAs act together to mediate X chromosome dosage compensation in Drosophila.

Ilik IA, Quinn JJ, Georgiev P, Tavares-Cadete F, Maticzka D, Toscano S, Wan Y, Spitale RC, Luscombe N, Backofen R, Chang HY, Akhtar A.

Mol Cell. 2013 Jul 25;51(2):156-73. doi: 10.1016/j.molcel.2013.07.001.

10.

Characterization of CRISPR RNA processing in Clostridium thermocellum and Methanococcus maripaludis.

Richter H, Zoephel J, Schermuly J, Maticzka D, Backofen R, Randau L.

Nucleic Acids Res. 2012 Oct;40(19):9887-96. doi: 10.1093/nar/gks737. Epub 2012 Aug 8.

11.

Global or local? Predicting secondary structure and accessibility in mRNAs.

Lange SJ, Maticzka D, Möhl M, Gagnon JN, Brown CM, Backofen R.

Nucleic Acids Res. 2012 Jul;40(12):5215-26. doi: 10.1093/nar/gks181. Epub 2012 Feb 28.

12.

Classifying proteinlike sequences in arbitrary lattice protein models using LatPack.

Mann M, Maticzka D, Saunders R, Backofen R.

HFSP J. 2008 Dec;2(6):396-404. doi: 10.2976/1.3027681. Epub 2008 Nov 26.

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