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Optimizing the use of point of care testing devices for screening patients.

Sarraf E, Mathews DM, Tsai MH, Goodwin AJ.

J Clin Monit Comput. 2019 Jun 10. doi: 10.1007/s10877-019-00332-w. [Epub ahead of print]


Secondary Use of Patient Tissue in Cancer Biobanks.

Mathews DJH, Rabin JT, Quain K, Campbell E, Collyar D, Hlubocky FJ, Isakoff S, Peppercorn J.

Oncologist. 2019 Jun 10. pii: theoncologist.2018-0376. doi: 10.1634/theoncologist.2018-0376. [Epub ahead of print]


Registered Nurses' Self-Assessed Knowledge of Evidence-Based Practice and Research: Moving Forward With New Information.

Nickles KP, Mathews DW, Nimmagadda H, Bailey ME, Cox TM, Franklin M, Rhodes-King A, Standish C, Teichman E, Hagle M.

J Nurses Prof Dev. 2019 May 22. doi: 10.1097/NND.0000000000000558. [Epub ahead of print]


Solidarity in the Age of CRISPR.

Mathews DJH.

CRISPR J. 2018 Aug;1:261-263. doi: 10.1089/crispr.2018.29026.mat. No abstract available.


Non-invasive early detection of acute transplant rejection via nanosensors of granzyme B activity.

Mac QD, Mathews DV, Kahla JA, Stoffers CM, Delmas OM, Holt BA, Adams AB, Kwong GA.

Nat Biomed Eng. 2019 Apr;3(4):281-291. doi: 10.1038/s41551-019-0358-7. Epub 2019 Feb 18.


Estimating uncertainty in predicted folding free energy changes of RNA secondary structures.

Zuber J, Mathews DH.

RNA. 2019 Jun;25(6):747-754. doi: 10.1261/rna.069203.118. Epub 2019 Apr 5.


How to benchmark RNA secondary structure prediction accuracy.

Mathews DH.

Methods. 2019 Apr 2. pii: S1046-2023(18)30340-2. doi: 10.1016/j.ymeth.2019.04.003. [Epub ahead of print] Review.


Determining Parameters for Non-Linear Models of Multi-Loop Free Energy Change.

Ward M, Sun H, Datta A, Wise M, Mathews DH.

Bioinformatics. 2019 Mar 28. pii: btz222. doi: 10.1093/bioinformatics/btz222. [Epub ahead of print]


Development of the iCook 4-H Curriculum for Youth and Adults: Cooking, Eating, and Playing Together for Childhood Obesity Prevention.

Franzen-Castle L, Colby SE, Kattelmann KK, Olfert MD, Mathews DR, Yerxa K, Baker B, Krehbiel M, Lehrke T, Wilson K, Flanagan SM, Ford A, Aguirre T, White AA.

J Nutr Educ Behav. 2019 Mar;51(3S):S60-S68. doi: 10.1016/j.jneb.2018.11.006.


The iCook 4-H Study: An Intervention and Dissemination Test of a Youth/Adult Out-of-School Program.

White AA, Colby SE, Franzen-Castle L, Kattelmann KK, Olfert MD, Gould TA, Hagedorn RL, Mathews DR, Moyer J, Wilson K, Yerxa K.

J Nutr Educ Behav. 2019 Mar;51(3S):S2-S20. doi: 10.1016/j.jneb.2018.11.012.


Long-term survival of pig-to-rhesus macaque renal xenografts is dependent on CD4 T cell depletion.

Kim SC, Mathews DV, Breeden CP, Higginbotham LB, Ladowski J, Martens G, Stephenson A, Farris AB, Strobert EA, Jenkins J, Walters EM, Larsen CP, Tector M, Tector AJ, Adams AB.

Am J Transplant. 2019 Mar 1. doi: 10.1111/ajt.15329. [Epub ahead of print]


Conservation of location of several specific inhibitory codon pairs in the Saccharomyces sensu stricto yeasts reveals translational selection.

Ghoneim DH, Zhang X, Brule CE, Mathews DH, Grayhack EJ.

Nucleic Acids Res. 2019 Feb 20;47(3):1164-1177. doi: 10.1093/nar/gky1262.


The iCook 4-H Study: Report on Physical Activity and Sedentary Time in Youth Participating in a Multicomponent Program Promoting Family Cooking, Eating, and Playing Together.

Kattelmann KK, Meendering JR, Hofer EJ, Merfeld CM, Olfert MD, Hagedorn RL, Colby SE, Franzen-Castle L, Moyer J, Mathews DR, White AA.

J Nutr Educ Behav. 2019 Mar;51(3S):S30-S40. doi: 10.1016/j.jneb.2018.09.002. Epub 2018 Dec 1.


Development and Testing of Program Evaluation Instruments for the iCook 4-H Curriculum.

Mathews DR, Kunicki ZJ, Colby SE, Franzen-Castle L, Kattelmann KK, Olfert MD, White AA.

J Nutr Educ Behav. 2019 Mar;51(3S):S21-S29. doi: 10.1016/j.jneb.2018.10.014. Epub 2018 Nov 22.


Design of highly active double-pseudoknotted ribozymes: a combined computational and experimental study.

Yamagami R, Kayedkhordeh M, Mathews DH, Bevilacqua PC.

Nucleic Acids Res. 2019 Jan 10;47(1):29-42. doi: 10.1093/nar/gky1118.


Ventilation perfusion pulmonary scintigraphy in the evaluation of pre-and post-lung transplant patients.

Pinho DF, Banga A, Torres F, Mathews D.

Transplant Rev (Orlando). 2019 Apr;33(2):107-114. doi: 10.1016/j.trre.2018.10.003. Epub 2018 Oct 23. Review.


Risk perception before and after presymptomatic genetic testing for Huntington's disease: Not always what one might expect.

Stuttgen K, Dvoskin R, Bollinger J, McCague A, Shpritz B, Brandt J, Mathews D.

Mol Genet Genomic Med. 2018 Nov;6(6):1140-1147. doi: 10.1002/mgg3.494. Epub 2018 Nov 4.


Chemically Accurate Relative Folding Stability of RNA Hairpins from Molecular Simulations.

Smith LG, Tan Z, Spasic A, Dutta D, Salas-Estrada LA, Grossfield A, Mathews DH.

J Chem Theory Comput. 2018 Dec 11;14(12):6598-6612. doi: 10.1021/acs.jctc.8b00633. Epub 2018 Nov 27.


mRNAs and lncRNAs intrinsically form secondary structures with short end-to-end distances.

Lai WC, Kayedkhordeh M, Cornell EV, Farah E, Bellaousov S, Rietmeijer R, Salsi E, Mathews DH, Ermolenko DN.

Nat Commun. 2018 Oct 18;9(1):4328. doi: 10.1038/s41467-018-06792-z.


Identification of new high affinity targets for Roquin based on structural conservation.

Braun J, Fischer S, Xu ZZ, Sun H, Ghoneim DH, Gimbel AT, Plessmann U, Urlaub H, Mathews DH, Weigand JE.

Nucleic Acids Res. 2018 Dec 14;46(22):12109-12125. doi: 10.1093/nar/gky908.


CD122 signaling in CD8+ memory T cells drives costimulation-independent rejection.

Mathews DV, Dong Y, Higginbotham LB, Kim SC, Breeden CP, Stobert EA, Jenkins J, Tso JY, Larsen CP, Adams AB.

J Clin Invest. 2018 Oct 1;128(10):4557-4572. doi: 10.1172/JCI95914. Epub 2018 Sep 17.


Analysis of RNA nearest neighbor parameters reveals interdependencies and quantifies the uncertainty in RNA secondary structure prediction.

Zuber J, Cabral BJ, McFadyen I, Mauger DM, Mathews DH.

RNA. 2018 Nov;24(11):1568-1582. doi: 10.1261/rna.065102.117. Epub 2018 Aug 13.


Accelerated RNA secondary structure design using preselected sequences for helices and loops.

Bellaousov S, Kayedkhordeh M, Peterson RJ, Mathews DH.

RNA. 2018 Nov;24(11):1555-1567. doi: 10.1261/rna.066324.118. Epub 2018 Aug 10.


Perspectives on Genetic Testing and Return of Results from the First Cohort of Presymptomatically Tested Individuals At Risk of Huntington Disease.

Stuttgen KM, Bollinger JM, Dvoskin RL, McCague A, Shpritz B, Brandt J, Mathews DJH.

J Genet Couns. 2018 Dec;27(6):1428-1437. doi: 10.1007/s10897-018-0274-0. Epub 2018 Jul 2.


Structure of HIV TAR in complex with a Lab-Evolved RRM provides insight into duplex RNA recognition and synthesis of a constrained peptide that impairs transcription.

Belashov IA, Crawford DW, Cavender CE, Dai P, Beardslee PC, Mathews DH, Pentelute BL, McNaughton BR, Wedekind JE.

Nucleic Acids Res. 2018 Jul 27;46(13):6401-6415. doi: 10.1093/nar/gky529.


Endophthalmitis Following XEN Stent Exposure.

Karri B, Gupta C, Mathews D.

J Glaucoma. 2018 Oct;27(10):931-933. doi: 10.1097/IJG.0000000000001012.


An Atypical Case of Bartonella henselae Osteomyelitis and Hepatic Disease.

Mathews DM, Vance KM, McMahon PM, Boston C, Bolton MT.

Case Rep Pediatr. 2018 Apr 5;2018:2750275. doi: 10.1155/2018/2750275. eCollection 2018.


Improving RNA nearest neighbor parameters for helices by going beyond the two-state model.

Spasic A, Berger KD, Chen JL, Seetin MG, Turner DH, Mathews DH.

Nucleic Acids Res. 2018 Jun 1;46(10):4883-4892. doi: 10.1093/nar/gky270.


Surprising Sequence Effects on GU Closure of Symmetric 2 × 2 Nucleotide RNA Internal Loops.

Berger KD, Kennedy SD, Schroeder SJ, Znosko BM, Sun H, Mathews DH, Turner DH.

Biochemistry. 2018 Apr 10;57(14):2121-2131. doi: 10.1021/acs.biochem.7b01306. Epub 2018 Mar 23.


Enhancing Autonomy in Biobank Decisions: Too Much of a Good Thing?

Mitchell PB, Ziniel SI, Savage SK, Christensen KD, Weitzman ER, Green RC, Huntington NL, Mathews DJ, Holm IA.

J Empir Res Hum Res Ethics. 2018 Apr;13(2):125-138. doi: 10.1177/1556264617753483. Epub 2018 Feb 23.


Molecular dynamics correctly models the unusual major conformation of the GAGU RNA internal loop and with NMR reveals an unusual minor conformation.

Spasic A, Kennedy SD, Needham L, Manoharan M, Kierzek R, Turner DH, Mathews DH.

RNA. 2018 May;24(5):656-672. doi: 10.1261/rna.064527.117. Epub 2018 Feb 6.


Widespread temperature sensitivity and tRNA decay due to mutations in a yeast tRNA.

Payea MJ, Sloma MF, Kon Y, Young DL, Guy MP, Zhang X, De Zoysa T, Fields S, Mathews DH, Phizicky EM.

RNA. 2018 Mar;24(3):410-422. doi: 10.1261/rna.064642.117. Epub 2017 Dec 19.


Improving patient safety during procedural sedation via respiratory volume monitoring: A randomized controlled trial.

Mathews DM, Oberding MJ, Simmons EL, O'Donnell SE, Abnet KR, MacDonald K.

J Clin Anesth. 2018 May;46:118-123. doi: 10.1016/j.jclinane.2017.08.004. Epub 2017 Dec 8.


The Therapeutic "Mis"conception: An Examination of its Normative Assumptions and a Call for its Revision.

Mathews DJH, Fins JJ, Racine E.

Camb Q Healthc Ethics. 2018 Jan;27(1):154-162. doi: 10.1017/S0963180117000482.


Modeling RNA secondary structure folding ensembles using SHAPE mapping data.

Spasic A, Assmann SM, Bevilacqua PC, Mathews DH.

Nucleic Acids Res. 2018 Jan 9;46(1):314-323. doi: 10.1093/nar/gkx1057.


Effect of primary Phacoviscocanalostomy/ Viscocanalostomy on intraocular pressure of normal tension glaucoma patients: 3-year results.

Ho DK, Garrick A, Aazem S, Mathews D.

BMC Ophthalmol. 2017 Nov 6;17(1):201. doi: 10.1186/s12886-017-0596-y.


Base pair probability estimates improve the prediction accuracy of RNA non-canonical base pairs.

Sloma MF, Mathews DH.

PLoS Comput Biol. 2017 Nov 6;13(11):e1005827. doi: 10.1371/journal.pcbi.1005827. eCollection 2017 Nov.


TurboFold II: RNA structural alignment and secondary structure prediction informed by multiple homologs.

Tan Z, Fu Y, Sharma G, Mathews DH.

Nucleic Acids Res. 2017 Nov 16;45(20):11570-11581. doi: 10.1093/nar/gkx815.


Unusual Cause of Prolonged Fever of Unknown Origin.

Mathews D, McMahon P, Bolton M.

Clin Pediatr (Phila). 2018 Feb;57(2):245-247. doi: 10.1177/0009922817693303. Epub 2017 Feb 1. No abstract available.


Physics-based all-atom modeling of RNA energetics and structure.

Smith LG, Zhao J, Mathews DH, Turner DH.

Wiley Interdiscip Rev RNA. 2017 Sep;8(5). doi: 10.1002/wrna.1422. Review.


Brain Monitoring and the Depth of Anesthesia: Another Goldilocks Dilemma.

Shander A, Lobel GP, Mathews DM.

Anesth Analg. 2018 Feb;126(2):705-709. doi: 10.1213/ANE.0000000000002383. Review. No abstract available.


Modeling RNA Secondary Structure with Sequence Comparison and Experimental Mapping Data.

Tan Z, Sharma G, Mathews DH.

Biophys J. 2017 Jul 25;113(2):330-338. doi: 10.1016/j.bpj.2017.06.039. Epub 2017 Jul 20.


Alloimmunity But Not Viral Immunity Promotes Allograft Loss in a Mouse Model of Polyomavirus-Associated Allograft Injury.

Kim SC, Wang J, Dong Y, Mathews DV, Albrecht JA, Breeden CP, Farris AB, Lukacher AE, Ford ML, Newell KA, Adams AB.

Transplant Direct. 2017 May 12;3(6):e161. doi: 10.1097/TXD.0000000000000677. eCollection 2017 Jun.


Advanced multi-loop algorithms for RNA secondary structure prediction reveal that the simplest model is best.

Ward M, Datta A, Wise M, Mathews DH.

Nucleic Acids Res. 2017 Aug 21;45(14):8541-8550. doi: 10.1093/nar/gkx512.


Belatacept-Resistant Rejection Is Associated With CD28+ Memory CD8 T Cells.

Mathews DV, Wakwe WC, Kim SC, Lowe MC, Breeden C, Roberts ME, Farris AB, Strobert EA, Jenkins JB, Larsen CP, Ford ML, Townsend R, Adams AB.

Am J Transplant. 2017 Sep;17(9):2285-2299. doi: 10.1111/ajt.14349. Epub 2017 Jul 11.


Increased Pretransplant Frequency of CD28+ CD4+ TEM Predicts Belatacept-Resistant Rejection in Human Renal Transplant Recipients.

Cortes-Cerisuelo M, Laurie SJ, Mathews DV, Winterberg PD, Larsen CP, Adams AB, Ford ML.

Am J Transplant. 2017 Sep;17(9):2350-2362. doi: 10.1111/ajt.14350. Epub 2017 Jun 30.


Structure-Function Model for Kissing Loop Interactions That Initiate Dimerization of Ty1 RNA.

Gamache ER, Doh JH, Ritz J, Laederach A, Bellaousov S, Mathews DH, Curcio MJ.

Viruses. 2017 Apr 26;9(5). pii: E93. doi: 10.3390/v9050093.


Interruption of OX40L signaling prevents costimulation blockade-resistant allograft rejection.

Kitchens WH, Dong Y, Mathews DV, Breeden CP, Strobert E, Fuentes ME, Larsen CP, Ford ML, Adams AB.

JCI Insight. 2017 Mar 9;2(5):e90317. doi: 10.1172/jci.insight.90317.

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