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Items: 1 to 50 of 66

1.

Correction: KETOS: Clinical decision support and machine learning as a service - A training and deployment platform based on Docker, OMOP-CDM, and FHIR Web Services.

Gruendner J, Schwachhofer T, Sippl P, Wolf N, Erpenbeck M, Gulden C, Kapsner LA, Zierk J, Mate S, Stürzl M, Croner R, Prokosch HU, Toddenroth D.

PLoS One. 2019 Nov 13;14(11):e0225442. doi: 10.1371/journal.pone.0225442. eCollection 2019.

2.

Induction of erythrocyte microvesicles by Escherichia Coli Alpha hemolysin.

Strack K, Lauri N, Maté SM, Saralegui A, Muñoz-Garay C, Schwarzbaum PJ, Herlax V.

Biochem J. 2019 Nov 29;476(22):3455-3473. doi: 10.1042/BCJ20190546.

PMID:
31661116
3.

A method for the graphical modeling of relative temporal constraints.

Mate S, Bürkle T, Kapsner LA, Toddenroth D, Kampf MO, Sedlmayr M, Castellanos I, Prokosch HU, Kraus S.

J Biomed Inform. 2019 Dec;100:103314. doi: 10.1016/j.jbi.2019.103314. Epub 2019 Oct 17.

PMID:
31629921
4.

[The effect of surgical treatment of bowel endometriosis on fertility].

Brubel R, Dobó N, Csibi N, Kövesdi A, Máté S, Ács N, Lukovich P, Murber Á, Bokor A.

Orv Hetil. 2019 Oct;160(41):1633-1638. doi: 10.1556/650.2019.31514. Hungarian.

PMID:
31587576
5.

KETOS: Clinical decision support and machine learning as a service - A training and deployment platform based on Docker, OMOP-CDM, and FHIR Web Services.

Gruendner J, Schwachhofer T, Sippl P, Wolf N, Erpenbeck M, Gulden C, Kapsner LA, Zierk J, Mate S, Stürzl M, Croner R, Prokosch HU, Toddenroth D.

PLoS One. 2019 Oct 3;14(10):e0223010. doi: 10.1371/journal.pone.0223010. eCollection 2019. Erratum in: PLoS One. 2019 Nov 13;14(11):e0225442.

6.

Pan-European Data Harmonization for Biobanks in ADOPT BBMRI-ERIC.

Mate S, Kampf M, Rödle W, Kraus S, Proynova R, Silander K, Ebert L, Lablans M, Schüttler C, Knell C, Eklund N, Hummel M, Holub P, Prokosch HU.

Appl Clin Inform. 2019 Aug;10(4):679-692. doi: 10.1055/s-0039-1695793. Epub 2019 Sep 11.

PMID:
31509880
7.

Moving Towards an EHR Data Quality Framework: The MIRACUM Approach.

Kapsner LA, Kampf MO, Seuchter SA, Kamdje-Wabo G, Gradinger T, Ganslandt T, Mate S, Gruendner J, Kraska D, Prokosch HU.

Stud Health Technol Inform. 2019 Sep 3;267:247-253. doi: 10.3233/SHTI190834.

PMID:
31483279
8.

Impact of sphingomyelin acyl chain (16:0 vs 24:1) on the interfacial properties of Langmuir monolayers: A PM-IRRAS study.

Vázquez RF, Daza Millone MA, Pavinatto FJ, Fanani ML, Oliveira ON Jr, Vela ME, Maté SM.

Colloids Surf B Biointerfaces. 2019 Jan 1;173:549-556. doi: 10.1016/j.colsurfb.2018.10.018. Epub 2018 Oct 11.

PMID:
30347381
9.

Phase-segregated Membrane Model assessed by a combined SPR-AFM Approach.

Daza Millone MA, Vázquez RF, Maté SM, Vela ME.

Colloids Surf B Biointerfaces. 2018 Dec 1;172:423-429. doi: 10.1016/j.colsurfb.2018.08.066. Epub 2018 Aug 31.

PMID:
30196227
10.

Samply.MDR - A Metadata Repository and Its Application in Various Research Networks.

Kadioglu D, Breil B, Knell C, Lablans M, Mate S, Schlue D, Serve H, Storf H, Ückert F, Wagner T, Weingardt P, Prokosch HU.

Stud Health Technol Inform. 2018;253:50-54.

PMID:
30147039
11.

Investigating the Capabilities of FHIR Search for Clinical Trial Phenotyping.

Gulden C, Mate S, Prokosch HU, Kraus S.

Stud Health Technol Inform. 2018;253:3-7.

PMID:
30147028
12.

Persistence of Ebola virus after the end of widespread transmission in Liberia: an outbreak report.

Dokubo EK, Wendland A, Mate SE, Ladner JT, Hamblion EL, Raftery P, Blackley DJ, Laney AS, Mahmoud N, Wayne-Davies G, Hensley L, Stavale E, Fakoli L, Gregory C, Chen TH, Koryon A, Roth Allen D, Mann J, Hickey A, Saindon J, Badini M, Baller A, Clement P, Bolay F, Wapoe Y, Wiley MR, Logue J, Dighero-Kemp B, Higgs E, Gasasira A, Williams DE, Dahn B, Kateh F, Nyenswah T, Palacios G, Fallah MP.

Lancet Infect Dis. 2018 Sep;18(9):1015-1024. doi: 10.1016/S1473-3099(18)30417-1. Epub 2018 Jul 23.

PMID:
30049622
13.

Volume expansion of erythrocytes is not the only mechanism responsible for the protection by arginine-based surfactants against hypotonic hemolysis.

Fait ME, Hermet M, Vazquez R, Mate S, Daza Millone MA, Vela ME, Morcelle SR, Bakas L.

Colloids Surf B Biointerfaces. 2018 Nov 1;171:134-141. doi: 10.1016/j.colsurfb.2018.07.005. Epub 2018 Jul 4.

PMID:
30025375
14.

Cross-Border Transmission of Ebola Virus as the Cause of a Resurgent Outbreak in Liberia in April 2016.

Mate SE, Wiley MR, Ladner JT, Dokubo EK, Fakoli L, Fallah M, Nyenswah TG, DiClaro JW, Deboer JT, Williams DE, Bolay F, Palacios G.

Clin Infect Dis. 2018 Sep 14;67(7):1147-1149. doi: 10.1093/cid/ciy281. No abstract available.

PMID:
29659740
15.

From a Content Delivery Portal to a Knowledge Management System for Standardized Cancer Documentation.

Schlue D, Mate S, Haier J, Kadioglu D, Prokosch HU, Breil B.

Stud Health Technol Inform. 2017;243:180-184.

PMID:
28883196
16.

Proof-of-Concept Integration of Heterogeneous Biobank IT Infrastructures into a Hybrid Biobanking Network.

Mate S, Kadioglu D, Majeed RW, Stöhr MR, Folz M, Vormstein P, Storf H, Brucker DP, Keune D, Zerbe N, Hummel M, Senghas K, Prokosch HU, Lablans M.

Stud Health Technol Inform. 2017;243:100-104.

PMID:
28883179
17.

A Decentralized IT Architecture for Locating and Negotiating Access to Biobank Samples.

Proynova R, Alexandre D, Lablans M, Van Enckevort D, Mate S, Eklund N, Silander K, Hummel M, Holub P, Ückert F.

Stud Health Technol Inform. 2017;243:75-79.

PMID:
28883174
18.

On-The-Fly Query Translation Between i2b2 and Samply in the German Biobank Node (GBN) Prototypes.

Mate S, Vormstein P, Kadioglu D, Majeed RW, Lablans M, Prokosch HU, Storf H.

Stud Health Technol Inform. 2017;243:42-46.

PMID:
28883167
19.

Standards-Based Procedural Phenotyping: The Arden Syntax on i2b2.

Mate S, Castellanos I, Ganslandt T, Prokosch HU, Kraus S.

Stud Health Technol Inform. 2017;243:37-41.

PMID:
28883166
20.

Interaction of acylated and unacylated forms of E. coli alpha-hemolysin with lipid monolayers: a PM-IRRAS study.

Vázquez RF, Daza Millone MA, Pavinatto FJ, Herlax VS, Bakás LS, Oliveira ON Jr, Vela ME, Maté SM.

Colloids Surf B Biointerfaces. 2017 Oct 1;158:76-83. doi: 10.1016/j.colsurfb.2017.06.020. Epub 2017 Jun 24.

PMID:
28683345
21.

Virus genomes reveal factors that spread and sustained the Ebola epidemic.

Dudas G, Carvalho LM, Bedford T, Tatem AJ, Baele G, Faria NR, Park DJ, Ladner JT, Arias A, Asogun D, Bielejec F, Caddy SL, Cotten M, D'Ambrozio J, Dellicour S, Di Caro A, Diclaro JW, Duraffour S, Elmore MJ, Fakoli LS, Faye O, Gilbert ML, Gevao SM, Gire S, Gladden-Young A, Gnirke A, Goba A, Grant DS, Haagmans BL, Hiscox JA, Jah U, Kugelman JR, Liu D, Lu J, Malboeuf CM, Mate S, Matthews DA, Matranga CB, Meredith LW, Qu J, Quick J, Pas SD, Phan MVT, Pollakis G, Reusken CB, Sanchez-Lockhart M, Schaffner SF, Schieffelin JS, Sealfon RS, Simon-Loriere E, Smits SL, Stoecker K, Thorne L, Tobin EA, Vandi MA, Watson SJ, West K, Whitmer S, Wiley MR, Winnicki SM, Wohl S, Wölfel R, Yozwiak NL, Andersen KG, Blyden SO, Bolay F, Carroll MW, Dahn B, Diallo B, Formenty P, Fraser C, Gao GF, Garry RF, Goodfellow I, Günther S, Happi CT, Holmes EC, Kargbo B, Keïta S, Kellam P, Koopmans MPG, Kuhn JH, Loman NJ, Magassouba N, Naidoo D, Nichol ST, Nyenswah T, Palacios G, Pybus OG, Sabeti PC, Sall A, Ströher U, Wurie I, Suchard MA, Lemey P, Rambaut A.

Nature. 2017 Apr 20;544(7650):309-315. doi: 10.1038/nature22040. Epub 2017 Apr 12.

22.

Dynamic regulation of extracellular ATP in Escherichia coli.

Alvarez CL, Corradi G, Lauri N, Marginedas-Freixa I, Leal Denis MF, Enrique N, Mate SM, Milesi V, Ostuni MA, Herlax V, Schwarzbaum PJ.

Biochem J. 2017 Apr 4;474(8):1395-1416. doi: 10.1042/BCJ20160879.

PMID:
28246335
23.

Simplified Deployment of Health Informatics Applications by Providing Docker Images.

Löbe M, Ganslandt T, Lotzmann L, Mate S, Christoph J, Baum B, Sariyar M, Wu J, Stäubert S.

Stud Health Technol Inform. 2016;228:643-7.

PMID:
27577463
24.

Reduced evolutionary rate in reemerged Ebola virus transmission chains.

Blackley DJ, Wiley MR, Ladner JT, Fallah M, Lo T, Gilbert ML, Gregory C, D'ambrozio J, Coulter S, Mate S, Balogun Z, Kugelman J, Nwachukwu W, Prieto K, Yeiah A, Amegashie F, Kearney B, Wisniewski M, Saindon J, Schroth G, Fakoli L, Diclaro JW 2nd, Kuhn JH, Hensley LE, Jahrling PB, Ströher U, Nichol ST, Massaquoi M, Kateh F, Clement P, Gasasira A, Bolay F, Monroe SS, Rambaut A, Sanchez-Lockhart M, Scott Laney A, Nyenswah T, Christie A, Palacios G.

Sci Adv. 2016 Apr 29;2(4):e1600378. doi: 10.1126/sciadv.1600378. eCollection 2016 Apr.

25.

The unfavorable lipid environment reduced caveolin-1 expression in apical membranes from human preeclamptic placentas.

Levi L, Castro-Parodi M, Martínez N, Piehl LL, Rubín De Celis E, Herlax V, Mate S, Farina M, Damiano AE.

Biochim Biophys Acta. 2016 Sep;1858(9):2171-2180. doi: 10.1016/j.bbamem.2016.06.014. Epub 2016 Jun 22. No abstract available.

26.

Cynomolgus macaque (Macaca fascicularis) immunoglobulin heavy chain locus description.

Yu GY, Mate S, Garcia K, Ward MD, Brueggemann E, Hall M, Kenny T, Sanchez-Lockhart M, Lefranc MP, Palacios G.

Immunogenetics. 2016 Jul;68(6-7):417-428. doi: 10.1007/s00251-016-0921-2. Epub 2016 May 27.

PMID:
27233955
27.

Relationship between intracellular calcium and morphologic changes in rabbit erythrocytes: Effects of the acylated and unacylated forms of E. coli alpha-hemolysin.

Vázquez RF, Maté SM, Bakás LS, Muñoz-Garay C, Herlax VS.

Biochim Biophys Acta. 2016 Aug;1858(8):1944-53. doi: 10.1016/j.bbamem.2016.05.013. Epub 2016 May 17. No abstract available.

28.

Giant aneurysm of the vertical vein in a case of supracardiac total anomalous pulmonary venous connection.

Phadke MS, Mate SD, Kerkar PG.

Cardiol Young. 2016 Jun;26(5):968-70. doi: 10.1017/S1047951116000111. Epub 2016 Apr 18.

PMID:
27087271
29.

[Strategies for biobank networks. Classification of different approaches for locating samples and an outlook on the future within the BBMRI-ERIC].

Lablans M, Kadioglu D, Mate S, Leb I, Prokosch HU, Ückert F.

Bundesgesundheitsblatt Gesundheitsforschung Gesundheitsschutz. 2016 Mar;59(3):373-8. doi: 10.1007/s00103-015-2299-y. German.

PMID:
26753865
30.

Evolution and Spread of Ebola Virus in Liberia, 2014-2015.

Ladner JT, Wiley MR, Mate S, Dudas G, Prieto K, Lovett S, Nagle ER, Beitzel B, Gilbert ML, Fakoli L, Diclaro JW 2nd, Schoepp RJ, Fair J, Kuhn JH, Hensley LE, Park DJ, Sabeti PC, Rambaut A, Sanchez-Lockhart M, Bolay FK, Kugelman JR, Palacios G.

Cell Host Microbe. 2015 Dec 9;18(6):659-69. doi: 10.1016/j.chom.2015.11.008.

31.

Integrated Data Repository Toolkit (IDRT). A Suite of Programs to Facilitate Health Analytics on Heterogeneous Medical Data.

Bauer CR, Ganslandt T, Baum B, Christoph J, Engel I, Löbe M, Mate S, Stäubert S, Drepper J, Prokosch HU, Winter A, Sax U.

Methods Inf Med. 2016;55(2):125-35. doi: 10.3414/ME15-01-0082. Epub 2015 Nov 4.

PMID:
26534843
32.

Molecular Evidence of Sexual Transmission of Ebola Virus.

Mate SE, Kugelman JR, Nyenswah TG, Ladner JT, Wiley MR, Cordier-Lassalle T, Christie A, Schroth GP, Gross SM, Davies-Wayne GJ, Shinde SA, Murugan R, Sieh SB, Badio M, Fakoli L, Taweh F, de Wit E, van Doremalen N, Munster VJ, Pettitt J, Prieto K, Humrighouse BW, Ströher U, DiClaro JW, Hensley LE, Schoepp RJ, Safronetz D, Fair J, Kuhn JH, Blackley DJ, Laney AS, Williams DE, Lo T, Gasasira A, Nichol ST, Formenty P, Kateh FN, De Cock KM, Bolay F, Sanchez-Lockhart M, Palacios G.

N Engl J Med. 2015 Dec 17;373(25):2448-54. doi: 10.1056/NEJMoa1509773. Epub 2015 Oct 14.

33.

Induction of eryptosis by low concentrations of E. coli alpha-hemolysin.

Velásquez FC, Maté S, Bakás L, Herlax V.

Biochim Biophys Acta. 2015 Nov;1848(11 Pt A):2779-88. doi: 10.1016/j.bbamem.2015.08.012. Epub 2015 Aug 21.

34.

Monitoring of Ebola Virus Makona Evolution through Establishment of Advanced Genomic Capability in Liberia.

Kugelman JR, Wiley MR, Mate S, Ladner JT, Beitzel B, Fakoli L, Taweh F, Prieto K, Diclaro JW, Minogue T, Schoepp RJ, Schaecher KE, Pettitt J, Bateman S, Fair J, Kuhn JH, Hensley L, Park DJ, Sabeti PC, Sanchez-Lockhart M, Bolay FK, Palacios G; US Army Medical Research Institute of Infectious Diseases; National Institutes of Health; Integrated Research Facility–Frederick Ebola Response Team 2014–2015.

Emerg Infect Dis. 2015 Jul;21(7):1135-43. doi: 10.3201/eid2107.150522.

35.

No assembly required: Full-length MHC class I allele discovery by PacBio circular consensus sequencing.

Westbrook CJ, Karl JA, Wiseman RW, Mate S, Koroleva G, Garcia K, Sanchez-Lockhart M, O'Connor DH, Palacios G.

Hum Immunol. 2015 Dec;76(12):891-6. doi: 10.1016/j.humimm.2015.03.022. Epub 2015 May 28.

PMID:
26028281
36.

Possible sexual transmission of Ebola virus - Liberia, 2015.

Christie A, Davies-Wayne GJ, Cordier-Lassalle T, Blackley DJ, Laney AS, Williams DE, Shinde SA, Badio M, Lo T, Mate SE, Ladner JT, Wiley MR, Kugelman JR, Palacios G, Holbrook MR, Janosko KB, de Wit E, van Doremalen N, Munster VJ, Pettitt J, Schoepp RJ, Verhenne L, Evlampidou I, Kollie KK, Sieh SB, Gasasira A, Bolay F, Kateh FN, Nyenswah TG, De Cock KM; Centers for Disease Control and Prevention (CDC).

MMWR Morb Mortal Wkly Rep. 2015 May 8;64(17):479-81. Erratum in: MMWR Morb Mortal Wkly Rep. 2015 Oct 23;64(41):1180. Cordier-Lasalle, Thierry [Corrected to Cordier-Lassalle, Thierry].

37.

Role of Apoptosis in the Development of Uterine Leiomyoma: Analysis of Expression Patterns of Bcl-2 and Bax in Human Leiomyoma Tissue With Clinical Correlations.

Csatlós É, Máté S, Laky M, Rigó J Jr, Joó JG.

Int J Gynecol Pathol. 2015 Jul;34(4):334-9. doi: 10.1097/PGP.0000000000000158.

PMID:
25851703
38.

Ontology-based data integration between clinical and research systems.

Mate S, Köpcke F, Toddenroth D, Martin M, Prokosch HU, Bürkle T, Ganslandt T.

PLoS One. 2015 Jan 14;10(1):e0116656. doi: 10.1371/journal.pone.0116656. eCollection 2015. Erratum in: PLoS One. 2015;10(3):e0122172.

39.

N-nervonoylsphingomyelin (C24:1) prevents lateral heterogeneity in cholesterol-containing membranes.

Maté S, Busto JV, García-Arribas AB, Sot J, Vazquez R, Herlax V, Wolf C, Bakás L, Goñi FM.

Biophys J. 2014 Jun 17;106(12):2606-16. doi: 10.1016/j.bpj.2014.04.054.

40.

Boundary region between coexisting lipid phases as initial binding sites for Escherichia coli alpha-hemolysin: a real-time study.

Maté SM, Vázquez RF, Herlax VS, Daza Millone MA, Fanani ML, Maggio B, Vela ME, Bakás LS.

Biochim Biophys Acta. 2014 Jul;1838(7):1832-41. doi: 10.1016/j.bbamem.2014.02.022. Epub 2014 Mar 7.

41.

Novel evidence for the specific interaction between cholesterol and α-haemolysin of Escherichia coli.

Vazquez RF, Maté SM, Bakás LS, Fernández MM, Malchiodi EL, Herlax VS.

Biochem J. 2014 Mar 15;458(3):481-9. doi: 10.1042/BJ20131432.

PMID:
24351077
42.

[Methods and conditions of fertility preservation in early-stage ovarian tumors].

Szatmári E, Máté S, Sipos N, Szánthó A, Silhavy M, Rigó J Jr.

Orv Hetil. 2013 Apr 7;154(14):523-30. doi: 10.1556/OH.2013.29581. Review. Hungarian.

PMID:
23545230
43.

[Giant uterine leiomyoma causing acute symptoms].

Máté S, Szatmári E, Sipos N, Széll J, Szánthó A, Rigó J Jr.

Orv Hetil. 2013 Mar 10;154(10):387-90. doi: 10.1556/OH.2013.29563. Hungarian.

PMID:
23461980
44.

The "North German Tumor Bank of Colorectal Cancer": status report after the first 2 years of support by the German Cancer Aid Foundation.

Oberländer M, Linnebacher M, König A, Bogoevska V, Brodersen C, Kaatz R, Krohn M, Hackmann M, Ingenerf J, Christoph J, Mate S, Prokosch HU, Yekebas EF, Thorns C, Büning J, Prall F, Uhlig R, Roblick UJ, Izbicki JR, Klar E, Bruch HP, Vollmar B, Habermann JK; ColoNet consortium.

Langenbecks Arch Surg. 2013 Feb;398(2):251-8. doi: 10.1007/s00423-012-1043-4. Epub 2013 Jan 8.

PMID:
23292500
45.

Eps homology domain endosomal transport proteins differentially localize to the neuromuscular junction.

Mate SE, Van Der Meulen JH, Arya P, Bhattacharyya S, Band H, Hoffman EP.

Skelet Muscle. 2012 Sep 13;2(1):19. doi: 10.1186/2044-5040-2-19.

46.

Designing and implementing a biobanking IT framework for multiple research scenarios.

Prokosch HU, Mate S, Christoph J, Beck A, Köpcke F, Stephan S, Beckmann MW, Rau T, Hartmann A, Wullich B, Breil B, Eckardt KU, Titze S, Habermann JK, Ingenerf J, Hackmann M, Ries M, Bürkle T, Ganslandt T.

Stud Health Technol Inform. 2012;180:559-63.

PMID:
22874253
47.

IT infrastructure components to support clinical care and translational research projects in a comprehensive cancer center.

Prokosch HU, Ries M, Beyer A, Schwenk M, Seggewies C, Köpcke F, Mate S, Martin M, Bärthlein B, Beckmann MW, Stürzl M, Croner R, Wullich B, Ganslandt T, Bürkle T.

Stud Health Technol Inform. 2011;169:892-6.

PMID:
21893875
48.

Populating the i2b2 database with heterogeneous EMR data: a semantic network approach.

Mate S, Bürkle T, Köpcke F, Breil B, Wullich B, Dugas M, Prokosch HU, Ganslandt T.

Stud Health Technol Inform. 2011;169:502-6.

PMID:
21893800
49.
50.

[Clinical-genetic care of BRCA-mutation carrier women: prevention, diagnosis and therapy].

Nagy Z, Csanád M, Tóth K, Máté S, Joó JG.

Orv Hetil. 2011 Jun 5;152(23):913-8. doi: 10.1556/OH.2011.29131. Hungarian.

PMID:
21592951

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