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A hybrid proton and hyperpolarized gas tagging MRI technique for lung respiratory motion imaging: a feasibility study.

Hu L, Huang Q, Cui T, Duarte I, Miller GW, Mugler JP, Cates GD, Mata JF, de Lange EE, Altes TA, Yin FF, Cai J.

Phys Med Biol. 2019 May 16;64(10):105019. doi: 10.1088/1361-6560/ab160c.


An initial investigation of hyperpolarized gas tagging magnetic resonance imaging in evaluating deformable image registration-based lung ventilation.

Cui T, Miller GW, Mugler JP 3rd, Cates GD Jr, Mata JF, de Lange EE, Huang Q, Altes TA, Yin FF, Cai J.

Med Phys. 2018 Dec;45(12):5535-5542. doi: 10.1002/mp.13223. Epub 2018 Oct 23.


Convolutional Neural Networks with Template-Based Data Augmentation for Functional Lung Image Quantification.

Tustison NJ, Avants BB, Lin Z, Feng X, Cullen N, Mata JF, Flors L, Gee JC, Altes TA, Mugler Iii JP, Qing K.

Acad Radiol. 2019 Mar;26(3):412-423. doi: 10.1016/j.acra.2018.08.003. Epub 2018 Sep 6.


Probing Changes in Lung Physiology in COPD Using CT, Perfusion MRI, and Hyperpolarized Xenon-129 MRI.

Qing K, Tustison NJ, Mugler JP 3rd, Mata JF, Lin Z, Zhao L, Wang D, Feng X, Shin JY, Callahan SJ, Bergman MP, Ruppert K, Altes TA, Cassani JM, Shim YM.

Acad Radiol. 2019 Mar;26(3):326-334. doi: 10.1016/j.acra.2018.05.025. Epub 2018 Aug 5.


Hyperpolarized helium-3 magnetic resonance lung imaging of non-sedated infants and young children: a proof-of-concept study.

Altes TA, Meyer CH, Mata JF, Froh DK, Paget-Brown A, Gerald Teague W, Fain SB, de Lange EE, Ruppert K, Botfield MC, Johnson MA, Mugler JP 3rd.

Clin Imaging. 2017 Sep - Oct;45:105-110. doi: 10.1016/j.clinimag.2017.04.004. Epub 2017 May 10.


A Dual Inhibitory Mechanism Sufficient to Maintain Cell-Cycle-Restricted CENP-A Assembly.

Stankovic A, Guo LY, Mata JF, Bodor DL, Cao XJ, Bailey AO, Shabanowitz J, Hunt DF, Garcia BA, Black BE, Jansen LET.

Mol Cell. 2017 Jan 19;65(2):231-246. doi: 10.1016/j.molcel.2016.11.021. Epub 2016 Dec 22.


Signal-to-noise ratio, T2 , and T2* for hyperpolarized helium-3 MRI of the human lung at three magnetic field strengths.

Komlosi P, Altes TA, Qing K, Mooney KE, Miller GW, Mata JF, de Lange EE, Tobias WA, Cates GD Jr, Mugler JP 3rd.

Magn Reson Med. 2017 Oct;78(4):1458-1463. doi: 10.1002/mrm.26516. Epub 2016 Oct 28.


Hyperpolarized Gas Magnetic Resonance Lung Imaging in Children and Young Adults.

Flors L, Mugler JP 3rd, de Lange EE, Miller GW, Mata JF, Tustison N, Ruset IC, Hersman FW, Altes TA.

J Thorac Imaging. 2016 Sep;31(5):285-95. doi: 10.1097/RTI.0000000000000218. Review.


Detecting pulmonary capillary blood pulsations using hyperpolarized xenon-129 chemical shift saturation recovery (CSSR) MR spectroscopy.

Ruppert K, Altes TA, Mata JF, Ruset IC, Hersman FW, Mugler JP 3rd.

Magn Reson Med. 2016 Apr;75(4):1771-80. doi: 10.1002/mrm.25794. Epub 2015 May 28.


Regional anisotropy of airspace orientation in the lung as assessed with hyperpolarized helium-3 diffusion MRI.

Komlosi P, Altes TA, Qing K, Mooney KE, Miller GW, Mata JF, de Lange EE, Tobias WA, Cates GD Jr, Brookeman JR, Mugler JP 3rd.

J Magn Reson Imaging. 2015 Dec;42(6):1777-82. doi: 10.1002/jmri.24950. Epub 2015 May 26.


New insights into lung diseases using hyperpolarized gas MRI.

Flors L, Altes TA, Mugler JP 3rd, de Lange EE, Miller GW, Mata JF, Ruset IC, Hersman FW.

Radiologia. 2015 Jul-Aug;57(4):303-13. doi: 10.1016/j.rx.2014.12.011. Epub 2015 Mar 5. English, Spanish.


Defining the optimal age for focal lesioning in a rat model of transcranial HIFU.

Zhang Y, Aubry JF, Zhang J, Wang Y, Roy J, Mata JF, Miller W, Dumont E, Xie M, Lee K, Zuo Z, Wintermark M.

Ultrasound Med Biol. 2015 Feb;41(2):449-55. doi: 10.1016/j.ultrasmedbio.2014.09.029. Epub 2014 Dec 23.


Rapid acquisition of helium-3 and proton three-dimensional image sets of the human lung in a single breath-hold using compressed sensing.

Qing K, Altes TA, Tustison NJ, Feng X, Chen X, Mata JF, Miller GW, de Lange EE, Tobias WA, Cates GD Jr, Brookeman JR, Mugler JP 3rd.

Magn Reson Med. 2015 Oct;74(4):1110-5. doi: 10.1002/mrm.25499. Epub 2014 Oct 21.


Assessment of lung function in asthma and COPD using hyperpolarized 129Xe chemical shift saturation recovery spectroscopy and dissolved-phase MRI.

Qing K, Mugler JP 3rd, Altes TA, Jiang Y, Mata JF, Miller GW, Ruset IC, Hersman FW, Ruppert K.

NMR Biomed. 2014 Dec;27(12):1490-501. doi: 10.1002/nbm.3179. Epub 2014 Aug 22.


The quantitative architecture of centromeric chromatin.

Bodor DL, Mata JF, Sergeev M, David AF, Salimian KJ, Panchenko T, Cleveland DW, Black BE, Shah JV, Jansen LE.

Elife. 2014 Jul 15;3:e02137. doi: 10.7554/eLife.02137.


Lung injury induced by secondhand smoke exposure detected with hyperpolarized helium-3 diffusion MR.

Wang C, Mugler JP 3rd, de Lange EE, Patrie JT, Mata JF, Altes TA.

J Magn Reson Imaging. 2014 Jan;39(1):77-84. doi: 10.1002/jmri.24104. Epub 2013 Oct 7.


Regional mapping of gas uptake by blood and tissue in the human lung using hyperpolarized xenon-129 MRI.

Qing K, Ruppert K, Jiang Y, Mata JF, Miller GW, Shim YM, Wang C, Ruset IC, Hersman FW, Altes TA, Mugler JP 3rd.

J Magn Reson Imaging. 2014 Feb;39(2):346-59. doi: 10.1002/jmri.24181. Epub 2013 May 16.


Assembly in G1 phase and long-term stability are unique intrinsic features of CENP-A nucleosomes.

Bodor DL, Valente LP, Mata JF, Black BE, Jansen LE.

Mol Biol Cell. 2013 Apr;24(7):923-32. doi: 10.1091/mbc.E13-01-0034. Epub 2013 Jan 30.


A rapid FACS-based strategy to isolate human gene knockin and knockout clones.

Mata JF, Lopes T, Gardner R, Jansen LE.

PLoS One. 2012;7(2):e32646. doi: 10.1371/journal.pone.0032646. Epub 2012 Feb 29.


Multiple-exchange-time xenon polarization transfer contrast (MXTC) MRI: initial results in animals and healthy volunteers.

Dregely I, Ruset IC, Mata JF, Ketel J, Ketel S, Distelbrink J, Altes TA, Mugler JP 3rd, Wilson Miller G, William Hersman F, Ruppert K.

Magn Reson Med. 2012 Apr;67(4):943-53. doi: 10.1002/mrm.23066. Epub 2011 Dec 28.


Exposure to magnetic fields and childhood acute lymphocytic leukemia in São Paulo, Brazil.

Wünsch-Filho V, Pelissari DM, Barbieri FE, Sant'Anna L, de Oliveira CT, de Mata JF, Tone LG, Lee ML, de Andréa ML, Bruniera P, Epelman S, Filho VO, Kheifets L.

Cancer Epidemiol. 2011 Dec;35(6):534-9. doi: 10.1016/j.canep.2011.05.008. Epub 2011 Aug 15.


Hyperpolarized Xenon-129 gas-exchange imaging of lung microstructure: first case studies in subjects with obstructive lung disease.

Dregely I, Mugler JP 3rd, Ruset IC, Altes TA, Mata JF, Miller GW, Ketel J, Ketel S, Distelbrink J, Hersman FW, Ruppert K.

J Magn Reson Imaging. 2011 May;33(5):1052-62. doi: 10.1002/jmri.22533.


Simultaneous magnetic resonance imaging of ventilation distribution and gas uptake in the human lung using hyperpolarized xenon-129.

Mugler JP 3rd, Altes TA, Ruset IC, Dregely IM, Mata JF, Miller GW, Ketel S, Ketel J, Hersman FW, Ruppert K.

Proc Natl Acad Sci U S A. 2010 Dec 14;107(50):21707-12. doi: 10.1073/pnas.1011912107. Epub 2010 Nov 22.


Low mRNA expression of the apoptosis-related genes CASP3, CASP8, and FAS is associated with low induction treatment response in childhood acute lymphoblastic leukemia (ALL).

Mata JF, Silveira VS, Mateo EC, Cortez MA, Queiroz RG, Yunes JA, Lee ML, Toledo SR, Petrilli AS, Brandalise SR, Tone LG, Scrideli CA.

Pediatr Blood Cancer. 2010 Jul 15;55(1):100-7. doi: 10.1002/pbc.22463.


A short-breath-hold technique for lung pO2 mapping with 3He MRI.

Miller GW, Mugler JP 3rd, Altes TA, Cai J, Mata JF, de Lange EE, Tobias WA, Cates GD, Brookeman JR.

Magn Reson Med. 2010 Jan;63(1):127-36. doi: 10.1002/mrm.22181.


mRNA expression of matrix metalloproteinases (MMPs) 2 and 9 and tissue inhibitor of matrix metalloproteinases (TIMPs) 1 and 2 in childhood acute lymphoblastic leukemia: potential role of TIMP1 as an adverse prognostic factor.

Scrideli CA, Cortez MA, Yunes JA, Queiróz RG, Valera ET, da Mata JF, Toledo SR, Pavoni-Ferreira P, Lee ML, Petrilli AS, Brandalise SR, Tone LG.

Leuk Res. 2010 Jan;34(1):32-7. doi: 10.1016/j.leukres.2009.10.007. Epub 2009 Oct 28.


MR diagnosis of a pulmonary embolism: comparison of P792 and Gd-DOTA for first-pass perfusion MRI and contrast-enhanced 3D MRA in a rabbit model.

Keilholz SD, Bozlar U, Fujiwara N, Mata JF, Berr SS, Corot C, Hagspiel KD.

Korean J Radiol. 2009 Sep-Oct;10(5):447-54. doi: 10.3348/kjr.2009.10.5.447. Epub 2009 Aug 25.


Time-resolved and high-resolution MRA in a rabbit model of pulmonary embolism at 7 T: preliminary results.

Mata JF, Bozlar U, Mugler JP 3rd, Miller GW, Berr SS, Hagspiel KD.

Magn Reson Imaging. 2010 Jan;28(1):139-45. doi: 10.1016/j.mri.2009.06.005. Epub 2009 Aug 19.


A rabbit irradiation platform for outcome assessment of lung stereotactic radiosurgery.

Cai J, Mata JF, Orton MD, Hagspiel KD, Mugler JP 3rd, Larner JM, Sheng K, Read PW.

Int J Radiat Oncol Biol Phys. 2009 Apr 1;73(5):1588-95. doi: 10.1016/j.ijrobp.2008.11.038.


Assessment of in vitro vs. in vivo lung structure using hyperpolarized helium-3 diffusion magnetic resonance imaging.

Mata JF, Altes TA, Ruppert K, Hagspiel KD, Miller GW, Brookeman JR, Mugler JP 3rd.

Magn Reson Imaging. 2009 Jul;27(6):845-51. doi: 10.1016/j.mri.2009.01.014. Epub 2009 Mar 9.


Commentaries on viewpoint: use of mean airspace chord length to assess emphysema. Mean airspace chord length and hyperpolarized gas magnetic-resonance measurements.

Mata JF.

J Appl Physiol (1985). 2008 Dec;105(6):1985; author reply 1986-7. doi: 10.1152/japplphysiol.vpcomm.zdg-8294.2008. No abstract available.


Assessment of the lung microstructure in patients with asthma using hyperpolarized 3He diffusion MRI at two time scales: comparison with healthy subjects and patients with COPD.

Wang C, Altes TA, Mugler JP 3rd, Miller GW, Ruppert K, Mata JF, Cates GD Jr, Borish L, de Lange EE.

J Magn Reson Imaging. 2008 Jul;28(1):80-8. doi: 10.1002/jmri.21408.


Helium-3 diffusion MR imaging of the human lung over multiple time scales.

Mugler JP 3rd, Wang C, Miller GW, Cates GD Jr, Mata JF, Brookeman JR, de Lange EE, Altes TA.

Acad Radiol. 2008 Jun;15(6):693-701. doi: 10.1016/j.acra.2007.10.009.


Extending the range of diffusion times for regional measurement of the 3He ADC in human lungs.

Wang C, Miller GW, Altes TA, de Lange EE, Cates GD Jr, Mata JF, Brookeman JR, Mugler JP 3rd.

Magn Reson Med. 2008 Mar;59(3):673-8. doi: 10.1002/mrm.21543.


Simulations of short-time diffusivity in lung airspaces and implications for S/V measurements using hyperpolarized-gas MRI.

Miller GW, Carl M, Mata JF, Cates GD Jr, Mugler JP 3rd.

IEEE Trans Med Imaging. 2007 Nov;26(11):1456-63.


MR grid-tagging using hyperpolarized helium-3 for regional quantitative assessment of pulmonary biomechanics and ventilation.

Cai J, Altes TA, Miller GW, Sheng K, Read PW, Mata JF, Zhong X, Cates GD Jr, de Lange EE, Mugler JP 3rd, Brookeman JR.

Magn Reson Med. 2007 Aug;58(2):373-80.


XTC MRI: sensitivity improvement through parameter optimization.

Ruppert K, Mata JF, Wang HT, Tobias WA, Cates GD, Brookeman JR, Hagspiel KD, Mugler JP 3rd.

Magn Reson Med. 2007 Jun;57(6):1099-109.


Prognostic significance of co-overexpression of the EGFR/IGFBP-2/HIF-2A genes in astrocytomas.

Scrideli CA, Carlotti CG Jr, Mata JF, Neder L, Machado HR, Oba-Sinjo SM, Rosemberg S, Marie SK, Tone LG.

J Neurooncol. 2007 Jul;83(3):233-9. Epub 2007 Feb 7.


Cytosine arabinoside-metabolizing enzyme genes are underexpressed in children with MLL gene-rearranged acute lymphoblastic leukemia.

Mata JF, Scrideli CA, Queiroz RP, Mori BO, Emerenciano M, Pombo-de-Oliveira MS, Tone LG.

Braz J Med Biol Res. 2006 Nov;39(11):1417-23.


Evaluation of emphysema severity and progression in a rabbit model: comparison of hyperpolarized 3He and 129Xe diffusion MRI with lung morphometry.

Mata JF, Altes TA, Cai J, Ruppert K, Mitzner W, Hagspiel KD, Patel B, Salerno M, Brookeman JR, de Lange EE, Tobias WA, Wang HT, Cates GD, Mugler JP 3rd.

J Appl Physiol (1985). 2007 Mar;102(3):1273-80. Epub 2006 Nov 16.


q-Space analysis of lung morphometry in vivo with hyperpolarized 3He spectroscopy.

Shanbhag DD, Altes TA, Miller GW, Mata JF, Knight-Scott J.

J Magn Reson Imaging. 2006 Jul;24(1):84-94.


Exploring lung function with hyperpolarized (129)Xe nuclear magnetic resonance.

Ruppert K, Mata JF, Brookeman JR, Hagspiel KD, Mugler JP 3rd.

Magn Reson Med. 2004 Apr;51(4):676-87.


Left ventricular remodeling subsequent to reperfused myocardial infarction: evaluation of a rat model using cardiac magnetic resonance imaging.

Jones JR, Mata JF, Yang Z, French BA, Oshinski JN.

J Cardiovasc Magn Reson. 2002;4(3):317-26.


Role of the human concentrative nucleoside transporter (hCNT1) in the cytotoxic action of 5[Prime]-deoxy-5-fluorouridine, an active intermediate metabolite of capecitabine, a novel oral anticancer drug.

Mata JF, García-Manteiga JM, Lostao MP, Fernández-Veledo S, Guillén-Gómez E, Larrayoz IM, Lloberas J, Casado FJ, Pastor-Anglada M.

Mol Pharmacol. 2001 Jun;59(6):1542-8.


MR virtual colonography using hyperpolarized (3)He as an endoluminal contrast agent: demonstration of feasibility.

Hagspiel KD, Altes TA, Mugler JP 3rd, Spellman MJ Jr, Mata JF, Tustison NJ, Brookeman JR.

Magn Reson Med. 2000 Nov;44(5):813-6.


Electrogenic uptake of nucleosides and nucleoside-derived drugs by the human nucleoside transporter 1 (hCNT1) expressed in Xenopus laevis oocytes.

Lostao MP, Mata JF, Larrayoz IM, Inzillo SM, Casado FJ, Pastor-Anglada M.

FEBS Lett. 2000 Sep 15;481(2):137-40.


Nucleoside transporters and liver cell growth.

Pastor-Anglada M, Felipe A, Casado FJ, del Santo B, Mata JF, Valdés R.

Biochem Cell Biol. 1998;76(5):771-7. Review.


Regulation of nucleoside transport by lipopolysaccharide, phorbol esters, and tumor necrosis factor-alpha in human B-lymphocytes.

Soler C, Felipe A, Mata JF, Casado FJ, Celada A, Pastor-Anglada M.

J Biol Chem. 1998 Oct 9;273(41):26939-45.


Molecular cloning of a bovine renal G-protein coupled receptor gene (bRGR): regulation of bRGR mRNA levels by amino acid availability.

Ferrer-Martínez A, Felipe A, Mata JF, Casado FJ, Pastor-Anglada M.

Biochem Biophys Res Commun. 1997 Sep 8;238(1):107-12.


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