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Items: 46

1.

Molecular Testing of Serial Blood Specimens from Patients with Early Lyme Disease during Treatment Reveals Changing Coinfection with Mixtures of Borrelia burgdorferi Genotypes.

Mosel MR, Carolan HE, Rebman AW, Castro S, Massire C, Ecker DJ, Soloski MJ, Aucott JN, Eshoo MW.

Antimicrob Agents Chemother. 2019 Jun 24;63(7). pii: e00237-19. doi: 10.1128/AAC.00237-19. Print 2019 Jul.

PMID:
31036693
2.

Broad-range survey of vector-borne pathogens and tick host identification of Ixodes ricinus from Southern Czech Republic.

Honig V, Carolan HE, Vavruskova Z, Massire C, Mosel MR, Crowder CD, Rounds MA, Ecker DJ, Ruzek D, Grubhoffer L, Luft BJ, Eshoo MW.

FEMS Microbiol Ecol. 2017 Nov 1;93(11). doi: 10.1093/femsec/fix129.

3.

Fatal disseminated Rasamsonia infection in cystic fibrosis post-lung transplantation.

Hong G, White M, Lechtzin N, West NE, Avery R, Miller H, Lee R, Lovari RJ, Massire C, Blyn LB, Liang X, Sutton DA, Fu J, Wickes BL, Wiederhold NP, Zhang SX.

J Cyst Fibros. 2017 Mar;16(2):e3-e7. doi: 10.1016/j.jcf.2017.01.005. Epub 2017 Feb 6.

4.

The IRIDICA BAC BSI Assay: Rapid, Sensitive and Culture-Independent Identification of Bacteria and Candida in Blood.

Metzgar D, Frinder MW, Rothman RE, Peterson S, Carroll KC, Zhang SX, Avornu GD, Rounds MA, Carolan HE, Toleno DM, Moore D, Hall TA, Massire C, Richmond GS, Gutierrez JR, Sampath R, Ecker DJ, Blyn LB.

PLoS One. 2016 Jul 6;11(7):e0158186. doi: 10.1371/journal.pone.0158186. eCollection 2016.

5.

Survey of Ixodes pacificus Ticks in California Reveals a Diversity of Microorganisms and a Novel and Widespread Anaplasmataceae Species.

Eshoo MW, Carolan HE, Massire C, Chou DM, Crowder CD, Rounds MA, Phillipson CA, Schutzer SE, Ecker DJ.

PLoS One. 2015 Sep 16;10(9):e0135828. doi: 10.1371/journal.pone.0135828. eCollection 2015.

6.

Improved sensitivity for molecular detection of bacterial and Candida infections in blood.

Bacconi A, Richmond GS, Baroldi MA, Laffler TG, Blyn LB, Carolan HE, Frinder MR, Toleno DM, Metzgar D, Gutierrez JR, Massire C, Rounds M, Kennel NJ, Rothman RE, Peterson S, Carroll KC, Wakefield T, Ecker DJ, Sampath R.

J Clin Microbiol. 2014 Sep;52(9):3164-74. doi: 10.1128/JCM.00801-14. Epub 2014 Jun 20.

7.

Analytical characterization of an assay designed to detect and identify diverse agents of disseminated viral infection.

Metzgar D, Lovari R, Ray K, Baynes D, Drapp D, Frinder M, Vijesurier R, Stemler M, Ofsaiof R, Carolan H, Welk J, Toleno D, Ranken R, Hall TA, Massire C, Sampath R, Blyn LB, Goveia J, Schneider G.

J Clin Virol. 2014 Mar;59(3):177-83. doi: 10.1016/j.jcv.2013.12.005. Epub 2013 Dec 29.

PMID:
24440177
8.

Rapid PCR/ESI-MS-based molecular genotyping of Staphylococcus aureus from nasal swabs of emergency department patients.

Kecojevic A, Ranken R, Ecker DJ, Massire C, Sampath R, Blyn LB, Hsieh YH, Rothman RE, Gaydos CA.

BMC Infect Dis. 2014 Jan 9;14:16. doi: 10.1186/1471-2334-14-16.

9.

Broad-spectrum biosensor capable of detecting and identifying diverse bacterial and Candida species in blood.

Metzgar D, Frinder M, Lovari R, Toleno D, Massire C, Blyn LB, Ranken R, Carolan HE, Hall TA, Moore D, Hansen CJ, Sampath R, Ecker DJ.

J Clin Microbiol. 2013 Aug;51(8):2670-8. doi: 10.1128/JCM.00966-13. Epub 2013 Jun 12.

10.

Molecular genotyping of Acinetobacter spp. isolated in Arizona, USA, using multilocus PCR and mass spectrometry.

Sarovich DS, Colman RE, Price EP, Massire C, Von Schulze AT, Waddell V, Anderson SM, Ecker DJ, Liguori AP, Engelthaler DM, Sampath R, Keim P, Eshoo MW, Wagner DM.

J Med Microbiol. 2013 Sep;62(Pt 9):1295-300. doi: 10.1099/jmm.0.052381-0. Epub 2013 Jun 5.

PMID:
23741021
11.

PCR followed by electrospray ionization mass spectrometry for broad-range identification of fungal pathogens.

Massire C, Buelow DR, Zhang SX, Lovari R, Matthews HE, Toleno DM, Ranken RR, Hall TA, Metzgar D, Sampath R, Blyn LB, Ecker DJ, Gu Z, Walsh TJ, Hayden RT.

J Clin Microbiol. 2013 Mar;51(3):959-66. doi: 10.1128/JCM.02621-12. Epub 2013 Jan 9.

12.

Detection, identification, and distribution of fungi in bronchoalveolar lavage specimens by use of multilocus PCR coupled with electrospray ionization/mass spectrometry.

Shin JH, Ranken R, Sefers SE, Lovari R, Quinn CD, Meng S, Carolan HE, Toleno D, Li H, Lee JN, Stratton CW, Massire C, Tang YW.

J Clin Microbiol. 2013 Jan;51(1):136-41. doi: 10.1128/JCM.01907-12. Epub 2012 Oct 24.

13.

Comprehensive biothreat cluster identification by PCR/electrospray-ionization mass spectrometry.

Sampath R, Mulholland N, Blyn LB, Massire C, Whitehouse CA, Waybright N, Harter C, Bogan J, Miranda MS, Smith D, Baldwin C, Wolcott M, Norwood D, Kreft R, Frinder M, Lovari R, Yasuda I, Matthews H, Toleno D, Housley R, Duncan D, Li F, Warren R, Eshoo MW, Hall TA, Hofstadler SA, Ecker DJ.

PLoS One. 2012;7(6):e36528. doi: 10.1371/journal.pone.0036528. Epub 2012 Jun 29.

14.

Monitoring seasonal influenza A evolution: rapid 2009 pandemic H1N1 surveillance with an reverse transcription-polymerase chain reaction/electro-spray ionization mass spectrometry assay.

Jeng K, Massire C, Zembower TR, Deyde VM, Gubareva LV, Hsieh YH, Rothman RE, Sampath R, Penugonda S, Metzgar D, Blyn LB, Hardick J, Gaydos CA.

J Clin Virol. 2012 Aug;54(4):332-6. doi: 10.1016/j.jcv.2012.05.002. Epub 2012 Jun 4.

15.

Rapid identification of Aspergillus terreus from bronchoalveolar lavage fluid by PCR and electrospray ionization with mass spectrometry.

Modi DA, Farrell JJ, Sampath R, Bhatia NS, Massire C, Ranken R, Bonomo RA.

J Clin Microbiol. 2012 Jul;50(7):2529-30. doi: 10.1128/JCM.00325-12. Epub 2012 Apr 18.

16.

Longitudinal analysis of the temporal evolution of Acinetobacter baumannii strains in Ohio, USA, by using rapid automated typing methods.

Decker BK, Perez F, Hujer AM, Hujer KM, Hall GS, Jacobs MR, Gebreyes WA, Zoll ST, Massire C, Eshoo MW, Ecker DJ, Rather PN, Bonomo RA.

PLoS One. 2012;7(4):e33443. doi: 10.1371/journal.pone.0033443. Epub 2012 Apr 12.

17.

Concurrent serotyping and genotyping of pneumococci by use of PCR and electrospray ionization mass spectrometry.

Massire C, Gertz RE Jr, Svoboda P, Levert K, Reed MS, Pohl J, Kreft R, Li F, White N, Ranken R, Blyn LB, Ecker DJ, Sampath R, Beall B.

J Clin Microbiol. 2012 Jun;50(6):2018-25. doi: 10.1128/JCM.06735-11. Epub 2012 Mar 21.

18.

Identification of a novel Acinetobacter baumannii clone in a US hospital outbreak by multilocus polymerase chain reaction/electrospray-ionization mass spectrometry.

Schuetz AN, Huard RC, Eshoo MW, Massire C, Della-Latta P, Wu F, Jenkins SG.

Diagn Microbiol Infect Dis. 2012 Jan;72(1):14-9. doi: 10.1016/j.diagmicrobio.2011.09.012. Epub 2011 Oct 19.

PMID:
22015323
19.

Molecular characterization of drug-resistant Mycobacterium tuberculosis isolates circulating in China by multilocus PCR and electrospray ionization mass spectrometry.

Wang F, Massire C, Li H, Cummins LL, Li F, Jin J, Fan X, Wang S, Shao L, Zhang S, Meng S, Wu J, Lu C, Blyn LB, Sampath R, Ecker DJ, Zhang W, Tang YW.

J Clin Microbiol. 2011 Jul;49(7):2719-21. doi: 10.1128/JCM.00317-11. Epub 2011 Apr 27.

20.

Simultaneous identification of mycobacterial isolates to the species level and determination of tuberculosis drug resistance by PCR followed by electrospray ionization mass spectrometry.

Massire C, Ivy CA, Lovari R, Kurepina N, Li H, Blyn LB, Hofstadler SA, Khechinashvili G, Stratton CW, Sampath R, Tang YW, Ecker DJ, Kreiswirth BN.

J Clin Microbiol. 2011 Mar;49(3):908-17. doi: 10.1128/JCM.01578-10. Epub 2010 Dec 29.

21.

Genomic signature-based identification of influenza A viruses using RT-PCR/electro-spray ionization mass spectrometry (ESI-MS) technology.

Deyde VM, Sampath R, Garten RJ, Blair PJ, Myers CA, Massire C, Matthews H, Svoboda P, Reed MS, Pohl J, Klimov AI, Gubareva LV.

PLoS One. 2010 Oct 12;5(10):e13293. doi: 10.1371/journal.pone.0013293.

22.

New technology for rapid molecular diagnosis of bloodstream infections.

Ecker DJ, Sampath R, Li H, Massire C, Matthews HE, Toleno D, Hall TA, Blyn LB, Eshoo MW, Ranken R, Hofstadler SA, Tang YW.

Expert Rev Mol Diagn. 2010 May;10(4):399-415. doi: 10.1586/erm.10.24.

PMID:
20465496
23.

Molecular genotyping of microbes by multilocus PCR and mass spectrometry: a new tool for hospital infection control and public health surveillance.

Ecker DJ, Massire C, Blyn LB, Hofstadler SA, Hannis JC, Eshoo MW, Hall TA, Sampath R.

Methods Mol Biol. 2009;551:71-87. doi: 10.1007/978-1-60327-999-4_7.

PMID:
19521868
24.

Rapid determination of quinolone resistance in Acinetobacter spp.

Hujer KM, Hujer AM, Endimiani A, Thomson JM, Adams MD, Goglin K, Rather PN, Pennella TT, Massire C, Eshoo MW, Sampath R, Blyn LB, Ecker DJ, Bonomo RA.

J Clin Microbiol. 2009 May;47(5):1436-42. doi: 10.1128/JCM.02380-08. Epub 2009 Mar 18.

25.

Occurrence, distribution, and origins of Streptococcus pneumoniae Serotype 6C, a recently recognized serotype.

Jacobs MR, Bajaksouzian S, Bonomo RA, Good CE, Windau AR, Hujer AM, Massire C, Melton R, Blyn LB, Ecker DJ, Sampath R.

J Clin Microbiol. 2009 Jan;47(1):64-72. doi: 10.1128/JCM.01524-08. Epub 2008 Oct 29.

26.

Ibis T5000: a universal biosensor approach for microbiology.

Ecker DJ, Sampath R, Massire C, Blyn LB, Hall TA, Eshoo MW, Hofstadler SA.

Nat Rev Microbiol. 2008 Jul;6(7):553-8. doi: 10.1038/nrmicro1918. Epub 2008 Jun 3. Review.

PMID:
18521073
27.

Genotypic evolution of Acinetobacter baumannii strains in an outbreak associated with war trauma.

Wortmann G, Weintrob A, Barber M, Scott P, Zoll ST, Eshoo MW, Sampath R, Ecker DJ, Massire C.

Infect Control Hosp Epidemiol. 2008 Jun;29(6):553-5. doi: 10.1086/588221.

PMID:
18510464
28.

Direct broad-range detection of alphaviruses in mosquito extracts.

Eshoo MW, Whitehouse CA, Zoll ST, Massire C, Pennella TT, Blyn LB, Sampath R, Hall TA, Ecker JA, Desai A, Wasieloski LP, Li F, Turell MJ, Schink A, Rudnick K, Otero G, Weaver SC, Ludwig GV, Hofstadler SA, Ecker DJ.

Virology. 2007 Nov 25;368(2):286-95. Epub 2007 Jul 25.

29.

Global surveillance of emerging Influenza virus genotypes by mass spectrometry.

Sampath R, Russell KL, Massire C, Eshoo MW, Harpin V, Blyn LB, Melton R, Ivy C, Pennella T, Li F, Levene H, Hall TA, Libby B, Fan N, Walcott DJ, Ranken R, Pear M, Schink A, Gutierrez J, Drader J, Moore D, Metzgar D, Addington L, Rothman R, Gaydos CA, Yang S, St George K, Fuschino ME, Dean AB, Stallknecht DE, Goekjian G, Yingst S, Monteville M, Saad MD, Whitehouse CA, Baldwin C, Rudnick KH, Hofstadler SA, Lemon SM, Ecker DJ.

PLoS One. 2007 May 30;2(5):e489.

30.

Rapid identification of emerging infectious agents using PCR and electrospray ionization mass spectrometry.

Sampath R, Hall TA, Massire C, Li F, Blyn LB, Eshoo MW, Hofstadler SA, Ecker DJ.

Ann N Y Acad Sci. 2007 Apr;1102:109-20. Review.

PMID:
17470915
31.

Analysis of antibiotic resistance genes in multidrug-resistant Acinetobacter sp. isolates from military and civilian patients treated at the Walter Reed Army Medical Center.

Hujer KM, Hujer AM, Hulten EA, Bajaksouzian S, Adams JM, Donskey CJ, Ecker DJ, Massire C, Eshoo MW, Sampath R, Thomson JM, Rather PN, Craft DW, Fishbain JT, Ewell AJ, Jacobs MR, Paterson DL, Bonomo RA.

Antimicrob Agents Chemother. 2006 Dec;50(12):4114-23. Epub 2006 Sep 25.

32.

Identification of Acinetobacter species and genotyping of Acinetobacter baumannii by multilocus PCR and mass spectrometry.

Ecker JA, Massire C, Hall TA, Ranken R, Pennella TT, Agasino Ivy C, Blyn LB, Hofstadler SA, Endy TP, Scott PT, Lindler L, Hamilton T, Gaddy C, Snow K, Pe M, Fishbain J, Craft D, Deye G, Riddell S, Milstrey E, Petruccelli B, Brisse S, Harpin V, Schink A, Ecker DJ, Sampath R, Eshoo MW.

J Clin Microbiol. 2006 Aug;44(8):2921-32.

33.

The Microbial Rosetta Stone database: A common structure for microbial biosecurity threat agents.

Ecke DJ, Sampath R, Willett P, Samant V, Massire C, Hall TA, Hari K, McNeil JA, Büchen-Osmond C, Budowle B.

J Forensic Sci. 2005 Nov;50(6):1380-5.

PMID:
16382832
34.

SAR by MS: discovery of a new class of RNA-binding small molecules for the hepatitis C virus: internal ribosome entry site IIA subdomain.

Seth PP, Miyaji A, Jefferson EA, Sannes-Lowery KA, Osgood SA, Propp SS, Ranken R, Massire C, Sampath R, Ecker DJ, Swayze EE, Griffey RH.

J Med Chem. 2005 Nov 17;48(23):7099-102.

PMID:
16279767
35.

Rapid identification and strain-typing of respiratory pathogens for epidemic surveillance.

Ecker DJ, Sampath R, Blyn LB, Eshoo MW, Ivy C, Ecker JA, Libby B, Samant V, Sannes-Lowery KA, Melton RE, Russell K, Freed N, Barrozo C, Wu J, Rudnick K, Desai A, Moradi E, Knize DJ, Robbins DW, Hannis JC, Harrell PM, Massire C, Hall TA, Jiang Y, Ranken R, Drader JJ, White N, McNeil JA, Crooke ST, Hofstadler SA.

Proc Natl Acad Sci U S A. 2005 May 31;102(22):8012-7. Epub 2005 May 23.

36.

Recurrent structural RNA motifs, Isostericity Matrices and sequence alignments.

Lescoute A, Leontis NB, Massire C, Westhof E.

Nucleic Acids Res. 2005 Apr 28;33(8):2395-409. Print 2005.

37.

The Microbial Rosetta Stone Database: a compilation of global and emerging infectious microorganisms and bioterrorist threat agents.

Ecker DJ, Sampath R, Willett P, Wyatt JR, Samant V, Massire C, Hall TA, Hari K, McNeil JA, Büchen-Osmond C, Budowle B.

BMC Microbiol. 2005 Apr 25;5:19.

38.

Rapid identification of emerging pathogens: coronavirus.

Sampath R, Hofstadler SA, Blyn LB, Eshoo MW, Hall TA, Massire C, Levene HM, Hannis JC, Harrell PM, Neuman B, Buchmeier MJ, Jiang Y, Ranken R, Drader JJ, Samant V, Griffey RH, McNeil JA, Crooke ST, Ecker DJ.

Emerg Infect Dis. 2005 Mar;11(3):373-9.

39.

Structural biology. Evolution of RNA architecture.

Westhof E, Massire C.

Science. 2004 Oct 1;306(5693):62-3. No abstract available.

PMID:
15459373
40.

Phylogenetic analysis of tmRNA genes within a bacterial subgroup reveals a specific structural signature.

Felden B, Massire C, Westhof E, Atkins JF, Gesteland RF.

Nucleic Acids Res. 2001 Apr 1;29(7):1602-7.

41.

Modeling RNA tertiary structure from patterns of sequence variation.

Michel F, Costa M, Massire C, Westhof E.

Methods Enzymol. 2000;317:491-510. Review. No abstract available.

PMID:
10829297
42.

MANIP: an interactive tool for modelling RNA.

Massire C, Westhof E.

J Mol Graph Model. 1998 Aug-Dec;16(4-6):197-205, 255-7.

PMID:
10522239
43.

Structural basis for the specificity of the initiation of HIV-1 reverse transcription.

Isel C, Westhof E, Massire C, Le Grice SF, Ehresmann B, Ehresmann C, Marquet R.

EMBO J. 1999 Feb 15;18(4):1038-48.

44.
45.

Phylogenetic evidence for a new tertiary interaction in bacterial RNase P RNAs.

Massire C, Jaeger L, Westhof E.

RNA. 1997 Jun;3(6):553-6. No abstract available.

46.

DRAWNA: a program for drawing schematic views of nucleic acids.

Massire C, Gaspin C, Westhof E.

J Mol Graph. 1994 Sep;12(3):201-6, 196.

PMID:
7529557

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