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Items: 1 to 50 of 94

1.

Single cell genomics yields a wide diversity of small planktonic protists across major ocean ecosystems.

Sieracki ME, Poulton NJ, Jaillon O, Wincker P, de Vargas C, Rubinat-Ripoll L, Stepanauskas R, Logares R, Massana R.

Sci Rep. 2019 Apr 15;9(1):6025. doi: 10.1038/s41598-019-42487-1.

2.

Diatom diversity through HTS-metabarcoding in coastal European seas.

Piredda R, Claverie JM, Decelle J, de Vargas C, Dunthorn M, Edvardsen B, Eikrem W, Forster D, Kooistra WHCF, Logares R, Massana R, Montresor M, Not F, Ogata H, Pawlowski J, Romac S, Sarno D, Stoeck T, Zingone A.

Sci Rep. 2018 Dec 24;8(1):18059. doi: 10.1038/s41598-018-36345-9.

3.

Quantifying long-term recurrence in planktonic microbial eukaryotes.

Giner CR, Balagué V, Krabberød AK, Ferrera I, Reñé A, Garcés E, Gasol JM, Logares R, Massana R.

Mol Ecol. 2019 Mar;28(5):923-935. doi: 10.1111/mec.14929. Epub 2019 Feb 4.

PMID:
30411822
4.

Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes.

Adl SM, Bass D, Lane CE, Lukeš J, Schoch CL, Smirnov A, Agatha S, Berney C, Brown MW, Burki F, Cárdenas P, Čepička I, Chistyakova L, Del Campo J, Dunthorn M, Edvardsen B, Eglit Y, Guillou L, Hampl V, Heiss AA, Hoppenrath M, James TY, Karnkowska A, Karpov S, Kim E, Kolisko M, Kudryavtsev A, Lahr DJG, Lara E, Le Gall L, Lynn DH, Mann DG, Massana R, Mitchell EAD, Morrow C, Park JS, Pawlowski JW, Powell MJ, Richter DJ, Rueckert S, Shadwick L, Shimano S, Spiegel FW, Torruella G, Youssef N, Zlatogursky V, Zhang Q.

J Eukaryot Microbiol. 2019 Jan;66(1):4-119. doi: 10.1111/jeu.12691.

5.

EukRef: Phylogenetic curation of ribosomal RNA to enhance understanding of eukaryotic diversity and distribution.

Del Campo J, Kolisko M, Boscaro V, Santoferrara LF, Nenarokov S, Massana R, Guillou L, Simpson A, Berney C, de Vargas C, Brown MW, Keeling PJ, Wegener Parfrey L.

PLoS Biol. 2018 Sep 17;16(9):e2005849. doi: 10.1371/journal.pbio.2005849. eCollection 2018 Sep.

6.

Constant abundances of ubiquitous uncultured protists in the open sea assessed by automated microscopy.

Mangot JF, Forn I, Obiol A, Massana R.

Environ Microbiol. 2018 Oct;20(10):3876-3889. doi: 10.1111/1462-2920.14408. Epub 2018 Oct 5.

PMID:
30209866
7.

Metabarcoding analysis on European coastal samples reveals new molecular metazoan diversity.

López-Escardó D, Paps J, de Vargas C, Massana R, Ruiz-Trillo I, Del Campo J.

Sci Rep. 2018 Jun 14;8(1):9106. doi: 10.1038/s41598-018-27509-8.

8.

Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans.

Seeleuthner Y, Mondy S, Lombard V, Carradec Q, Pelletier E, Wessner M, Leconte J, Mangot JF, Poulain J, Labadie K, Logares R, Sunagawa S, de Berardinis V, Salanoubat M, Dimier C, Kandels-Lewis S, Picheral M, Searson S; Tara Oceans Coordinators, Pesant S, Poulton N, Stepanauskas R, Bork P, Bowler C, Hingamp P, Sullivan MB, Iudicone D, Massana R, Aury JM, Henrissat B, Karsenti E, Jaillon O, Sieracki M, de Vargas C, Wincker P.

Nat Commun. 2018 Jan 22;9(1):310. doi: 10.1038/s41467-017-02235-3.

9.

Large-scale ocean connectivity and planktonic body size.

Villarino E, Watson JR, Jönsson B, Gasol JM, Salazar G, Acinas SG, Estrada M, Massana R, Logares R, Giner CR, Pernice MC, Olivar MP, Citores L, Corell J, Rodríguez-Ezpeleta N, Acuña JL, Molina-Ramírez A, González-Gordillo JI, Cózar A, Martí E, Cuesta JA, Agustí S, Fraile-Nuez E, Duarte CM, Irigoien X, Chust G.

Nat Commun. 2018 Jan 10;9(1):142. doi: 10.1038/s41467-017-02535-8.

10.

Unveiling the role and life strategies of viruses from the surface to the dark ocean.

Lara E, Vaqué D, Sà EL, Boras JA, Gomes A, Borrull E, Díez-Vives C, Teira E, Pernice MC, Garcia FC, Forn I, Castillo YM, Peiró A, Salazar G, Morán XAG, Massana R, Catalá TS, Luna GM, Agustí S, Estrada M, Gasol JM, Duarte CM.

Sci Adv. 2017 Sep 6;3(9):e1602565. doi: 10.1126/sciadv.1602565. eCollection 2017 Sep.

11.

Microeukaryote community in a partial nitritation reactor prior to anammox and an insight into the potential of ciliates as performance bioindicators.

Canals O, Massana R, Riera JL, Balagué V, Salvadó H.

N Biotechnol. 2018 Jul 25;43:3-12. doi: 10.1016/j.nbt.2017.05.003. Epub 2017 May 11.

PMID:
28502779
12.

Temperature regulation of marine heterotrophic prokaryotes increases latitudinally as a breach between bottom-up and top-down controls.

Morán XAG, Gasol JM, Pernice MC, Mangot JF, Massana R, Lara E, Vaqué D, Duarte CM.

Glob Chang Biol. 2017 Sep;23(9):3956-3964. doi: 10.1111/gcb.13730. Epub 2017 May 29.

PMID:
28423463
13.

Accessing the genomic information of unculturable oceanic picoeukaryotes by combining multiple single cells.

Mangot JF, Logares R, Sánchez P, Latorre F, Seeleuthner Y, Mondy S, Sieracki ME, Jaillon O, Wincker P, Vargas C, Massana R.

Sci Rep. 2017 Jan 27;7:41498. doi: 10.1038/srep41498.

14.

Microbial eukaryote communities exhibit robust biogeographical patterns along a gradient of Patagonian and Antarctic lakes.

Schiaffino MR, Lara E, Fernández LD, Balagué V, Singer D, Seppey CC, Massana R, Izaguirre I.

Environ Microbiol. 2016 Dec;18(12):5249-5264. doi: 10.1111/1462-2920.13566. Epub 2016 Oct 28.

PMID:
27709755
15.

Benthic protists: the under-charted majority.

Forster D, Dunthorn M, Mahé F, Dolan JR, Audic S, Bass D, Bittner L, Boutte C, Christen R, Claverie JM, Decelle J, Edvardsen B, Egge E, Eikrem W, Gobet A, Kooistra WH, Logares R, Massana R, Montresor M, Not F, Ogata H, Pawlowski J, Pernice MC, Romac S, Shalchian-Tabrizi K, Simon N, Richards TA, Santini S, Sarno D, Siano R, Vaulot D, Wincker P, Zingone A, de Vargas C, Stoeck T.

FEMS Microbiol Ecol. 2016 Aug;92(8). pii: fiw120. doi: 10.1093/femsec/fiw120. Epub 2016 Jun 5.

PMID:
27267932
16.

Environmental Sequencing Provides Reasonable Estimates of the Relative Abundance of Specific Picoeukaryotes.

Giner CR, Forn I, Romac S, Logares R, de Vargas C, Massana R.

Appl Environ Microbiol. 2016 Jul 15;82(15):4757-4766. doi: 10.1128/AEM.00560-16. Print 2016 Aug 1.

17.

Cyanobacterial symbionts diverged in the late Cretaceous towards lineage-specific nitrogen fixation factories in single-celled phytoplankton.

Cornejo-Castillo FM, Cabello AM, Salazar G, Sánchez-Baracaldo P, Lima-Mendez G, Hingamp P, Alberti A, Sunagawa S, Bork P, de Vargas C, Raes J, Bowler C, Wincker P, Zehr JP, Gasol JM, Massana R, Acinas SG.

Nat Commun. 2016 Mar 22;7:11071. doi: 10.1038/ncomms11071.

18.

Ecological and evolutionary significance of novel protist lineages.

Del Campo J, Guillou L, Hehenberger E, Logares R, López-García P, Massana R.

Eur J Protistol. 2016 Aug;55(Pt A):4-11. doi: 10.1016/j.ejop.2016.02.002. Epub 2016 Feb 20.

19.

Vertical distribution of major photosynthetic picoeukaryotic groups in stratified marine waters.

Cabello AM, Latasa M, Forn I, Morán XA, Massana R.

Environ Microbiol. 2016 May;18(5):1578-90. doi: 10.1111/1462-2920.13285.

PMID:
26971724
20.

Rarity in aquatic microbes: placing protists on the map.

Logares R, Mangot JF, Massana R.

Res Microbiol. 2015 Dec;166(10):831-41. doi: 10.1016/j.resmic.2015.09.009. Epub 2015 Oct 24. Review.

PMID:
26598213
21.

Molecular diversity and distribution of marine fungi across 130 European environmental samples.

Richards TA, Leonard G, Mahé F, Del Campo J, Romac S, Jones MD, Maguire F, Dunthorn M, De Vargas C, Massana R, Chambouvet A.

Proc Biol Sci. 2015 Nov 22;282(1819). pii: 20152243. doi: 10.1098/rspb.2015.2243.

22.

Large variability of bathypelagic microbial eukaryotic communities across the world's oceans.

Pernice MC, Giner CR, Logares R, Perera-Bel J, Acinas SG, Duarte CM, Gasol JM, Massana R.

ISME J. 2016 Apr;10(4):945-58. doi: 10.1038/ismej.2015.170. Epub 2015 Oct 9.

23.

Global distribution and vertical patterns of a prymnesiophyte-cyanobacteria obligate symbiosis.

Cabello AM, Cornejo-Castillo FM, Raho N, Blasco D, Vidal M, Audic S, de Vargas C, Latasa M, Acinas SG, Massana R.

ISME J. 2016 Mar;10(3):693-706. doi: 10.1038/ismej.2015.147. Epub 2015 Sep 25.

24.

Marine bacterial community structure resilience to changes in protist predation under phytoplankton bloom conditions.

Baltar F, Palovaara J, Unrein F, Catala P, Horňák K, Šimek K, Vaqué D, Massana R, Gasol JM, Pinhassi J.

ISME J. 2016 Mar;10(3):568-81. doi: 10.1038/ismej.2015.135. Epub 2015 Aug 11.

25.

Marine protist diversity in European coastal waters and sediments as revealed by high-throughput sequencing.

Massana R, Gobet A, Audic S, Bass D, Bittner L, Boutte C, Chambouvet A, Christen R, Claverie JM, Decelle J, Dolan JR, Dunthorn M, Edvardsen B, Forn I, Forster D, Guillou L, Jaillon O, Kooistra WH, Logares R, Mahé F, Not F, Ogata H, Pawlowski J, Pernice MC, Probert I, Romac S, Richards T, Santini S, Shalchian-Tabrizi K, Siano R, Simon N, Stoeck T, Vaulot D, Zingone A, de Vargas C.

Environ Microbiol. 2015 Oct;17(10):4035-49. doi: 10.1111/1462-2920.12955. Epub 2015 Aug 4.

PMID:
26119494
26.

Getting specific: making taxonomic and ecological sense of large sequencing data sets.

Massana R.

Mol Ecol. 2015 Jun;24(12):2904-6. doi: 10.1111/mec.13210.

PMID:
26095583
27.

Diversity and distribution of unicellular opisthokonts along the European coast analysed using high-throughput sequencing.

Del Campo J, Mallo D, Massana R, de Vargas C, Richards TA, Ruiz-Trillo I.

Environ Microbiol. 2015 Sep;17(9):3195-207. doi: 10.1111/1462-2920.12759. Epub 2015 Feb 14.

28.

Global abundance of planktonic heterotrophic protists in the deep ocean.

Pernice MC, Forn I, Gomes A, Lara E, Alonso-Sáez L, Arrieta JM, del Carmen Garcia F, Hernando-Morales V, MacKenzie R, Mestre M, Sintes E, Teira E, Valencia J, Varela MM, Vaqué D, Duarte CM, Gasol JM, Massana R.

ISME J. 2015 Mar;9(3):782-92. doi: 10.1038/ismej.2014.168. Epub 2014 Oct 7.

29.

The others: our biased perspective of eukaryotic genomes.

del Campo J, Sieracki ME, Molestina R, Keeling P, Massana R, Ruiz-Trillo I.

Trends Ecol Evol. 2014 May;29(5):252-9. doi: 10.1016/j.tree.2014.03.006. Epub 2014 Apr 11.

30.

Patterns of rare and abundant marine microbial eukaryotes.

Logares R, Audic S, Bass D, Bittner L, Boutte C, Christen R, Claverie JM, Decelle J, Dolan JR, Dunthorn M, Edvardsen B, Gobet A, Kooistra WH, Mahé F, Not F, Ogata H, Pawlowski J, Pernice MC, Romac S, Shalchian-Tabrizi K, Simon N, Stoeck T, Santini S, Siano R, Wincker P, Zingone A, Richards TA, de Vargas C, Massana R.

Curr Biol. 2014 Apr 14;24(8):813-21. doi: 10.1016/j.cub.2014.02.050. Epub 2014 Apr 3.

31.

The phylogenetic and ecological context of cultured and whole genome-sequenced planktonic bacteria from the coastal NW Mediterranean Sea.

Lekunberri I, Gasol JM, Acinas SG, Gómez-Consarnau L, Crespo BG, Casamayor EO, Massana R, Pedrós-Alió C, Pinhassi J.

Syst Appl Microbiol. 2014 May;37(3):216-28. doi: 10.1016/j.syapm.2013.11.005. Epub 2014 Jan 23.

PMID:
24462268
32.

Exploring the uncultured microeukaryote majority in the oceans: reevaluation of ribogroups within stramenopiles.

Massana R, del Campo J, Sieracki ME, Audic S, Logares R.

ISME J. 2014 Apr;8(4):854-66. doi: 10.1038/ismej.2013.204. Epub 2013 Nov 7.

33.

Mixotrophic haptophytes are key bacterial grazers in oligotrophic coastal waters.

Unrein F, Gasol JM, Not F, Forn I, Massana R.

ISME J. 2014 Jan;8(1):164-76. doi: 10.1038/ismej.2013.132. Epub 2013 Aug 8.

34.

Culturing bias in marine heterotrophic flagellates analyzed through seawater enrichment incubations.

del Campo J, Balagué V, Forn I, Lekunberri I, Massana R.

Microb Ecol. 2013 Oct;66(3):489-99. doi: 10.1007/s00248-013-0251-y. Epub 2013 Jun 11.

PMID:
23749062
35.

Biogeography of the uncultured marine picoeukaryote MAST-4: temperature-driven distribution patterns.

Rodríguez-Martínez R, Rocap G, Salazar G, Massana R.

ISME J. 2013 Aug;7(8):1531-43. doi: 10.1038/ismej.2013.53. Epub 2013 Apr 18.

36.

General patterns of diversity in major marine microeukaryote lineages.

Pernice MC, Logares R, Guillou L, Massana R.

PLoS One. 2013;8(2):e57170. doi: 10.1371/journal.pone.0057170. Epub 2013 Feb 21.

37.

Extremely high copy numbers and polymorphisms of the rDNA operon estimated from single cell analysis of oligotrich and peritrich ciliates.

Gong J, Dong J, Liu X, Massana R.

Protist. 2013 May;164(3):369-79. doi: 10.1016/j.protis.2012.11.006. Epub 2013 Jan 24.

PMID:
23352655
38.

Eukaryotic versus prokaryotic marine picoplankton ecology.

Massana R, Logares R.

Environ Microbiol. 2013 May;15(5):1254-61. doi: 10.1111/1462-2920.12043. Epub 2012 Dec 4. Review.

PMID:
23206217
39.

The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote small sub-unit rRNA sequences with curated taxonomy.

Guillou L, Bachar D, Audic S, Bass D, Berney C, Bittner L, Boutte C, Burgaud G, de Vargas C, Decelle J, Del Campo J, Dolan JR, Dunthorn M, Edvardsen B, Holzmann M, Kooistra WH, Lara E, Le Bescot N, Logares R, Mahé F, Massana R, Montresor M, Morard R, Not F, Pawlowski J, Probert I, Sauvadet AL, Siano R, Stoeck T, Vaulot D, Zimmermann P, Christen R.

Nucleic Acids Res. 2013 Jan;41(Database issue):D597-604. doi: 10.1093/nar/gks1160. Epub 2012 Nov 27.

40.

Unveiling trophic functions of uncultured protist taxa by incubation experiments in the brackish Baltic Sea.

Weber F, del Campo J, Wylezich C, Massana R, Jürgens K.

PLoS One. 2012;7(7):e41970. doi: 10.1371/journal.pone.0041970. Epub 2012 Jul 30.

41.

Taming the smallest predators of the oceans.

del Campo J, Not F, Forn I, Sieracki ME, Massana R.

ISME J. 2013 Feb;7(2):351-8. doi: 10.1038/ismej.2012.85. Epub 2012 Jul 19.

42.

Diversity patterns and activity of uncultured marine heterotrophic flagellates unveiled with pyrosequencing.

Logares R, Audic S, Santini S, Pernice MC, de Vargas C, Massana R.

ISME J. 2012 Oct;6(10):1823-33. doi: 10.1038/ismej.2012.36. Epub 2012 Apr 26.

43.

Functional convergence of microbes associated with temperate marine sponges.

Ribes M, Jiménez E, Yahel G, López-Sendino P, Diez B, Massana R, Sharp JH, Coma R.

Environ Microbiol. 2012 May;14(5):1224-39. doi: 10.1111/j.1462-2920.2012.02701.x. Epub 2012 Feb 15.

PMID:
22335606
44.

Low evolutionary diversification in a widespread and abundant uncultured protist (MAST-4).

Rodríguez-Martínez R, Rocap G, Logares R, Romac S, Massana R.

Mol Biol Evol. 2012 May;29(5):1393-406. doi: 10.1093/molbev/msr303. Epub 2011 Dec 13.

PMID:
22319144
45.

Eukaryotic picoplankton in surface oceans.

Massana R.

Annu Rev Microbiol. 2011;65:91-110. doi: 10.1146/annurev-micro-090110-102903. Review.

PMID:
21639789
46.

Discovery of novel intermediate forms redefines the fungal tree of life.

Jones MD, Forn I, Gadelha C, Egan MJ, Bass D, Massana R, Richards TA.

Nature. 2011 May 11;474(7350):200-3. doi: 10.1038/nature09984.

PMID:
21562490
47.

Molecular characterization of activated sludge from a seawater-processing wastewater treatment plant.

Sánchez O, Garrido L, Forn I, Massana R, Maldonado MI, Mas J.

Microb Biotechnol. 2011 Sep;4(5):628-42. doi: 10.1111/j.1751-7915.2011.00256.x. Epub 2011 Mar 17.

48.

Emerging diversity within chrysophytes, choanoflagellates and bicosoecids based on molecular surveys.

del Campo J, Massana R.

Protist. 2011 Jul;162(3):435-48. doi: 10.1016/j.protis.2010.10.003. Epub 2011 Jan 15.

PMID:
21239227
49.

Sequence diversity and novelty of natural assemblages of picoeukaryotes from the Indian Ocean.

Massana R, Pernice M, Bunge JA, del Campo J.

ISME J. 2011 Feb;5(2):184-95. doi: 10.1038/ismej.2010.104. Epub 2010 Jul 15.

50.

Evaluation of DNA extraction methods from complex phototrophic biofilms.

Ferrera I, Massana R, Balagué V, Pedrós-Alió C, Sánchez O, Mas J.

Biofouling. 2010 Apr;26(3):349-57. doi: 10.1080/08927011003605870.

PMID:
20140796

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