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Items: 1 to 50 of 1384

1.

Author Correction: Best practices for benchmarking germline small-variant calls in human genomes.

Krusche P, Trigg L, Boutros PC, Mason CE, De La Vega FM, Moore BL, Gonzalez-Porta M, Eberle MA, Tezak Z, Lababidi S, Truty R, Asimenos G, Funke B, Fleharty M, Chapman BA, Salit M, Zook JM; Global Alliance for Genomics and Health Benchmarking Team.

Nat Biotechnol. 2019 Mar 21. doi: 10.1038/s41587-019-0108-0. [Epub ahead of print]

PMID:
30899106
2.

Machine learning-powered antibiotics phenotypic drug discovery.

Zoffmann S, Vercruysse M, Benmansour F, Maunz A, Wolf L, Blum Marti R, Heckel T, Ding H, Truong HH, Prummer M, Schmucki R, Mason CS, Bradley K, Jacob AI, Lerner C, Araujo Del Rosario A, Burcin M, Amrein KE, Prunotto M.

Sci Rep. 2019 Mar 21;9(1):5013. doi: 10.1038/s41598-019-39387-9.

3.

Epigenetic Modifications in Acute Myeloid Leukemia: Prognosis, Treatment, and Heterogeneity.

Goldman SL, Hassan C, Khunte M, Soldatenko A, Jong Y, Afshinnekoo E, Mason CE.

Front Genet. 2019 Mar 1;10:133. doi: 10.3389/fgene.2019.00133. eCollection 2019. Review.

4.

The Impact of Heterogeneity on Single-Cell Sequencing.

Goldman SL, MacKay M, Afshinnekoo E, Melnick AM, Wu S, Mason CE.

Front Genet. 2019 Mar 1;10:8. doi: 10.3389/fgene.2019.00008. eCollection 2019.

5.

Best practices for benchmarking germline small-variant calls in human genomes.

Krusche P, Trigg L, Boutros PC, Mason CE, De La Vega FM, Moore BL, Gonzalez-Porta M, Eberle MA, Tezak Z, Lababidi S, Truty R, Asimenos G, Funke B, Fleharty M, Chapman BA, Salit M, Zook JM; Global Alliance for Genomics and Health Benchmarking Team.

Nat Biotechnol. 2019 Mar 11. doi: 10.1038/s41587-019-0054-x. [Epub ahead of print] Erratum in: Nat Biotechnol. 2019 Mar 21;:.

PMID:
30858580
6.

Genome wide association mapping of floral traits in cultivated sunflower (Helianthus annuus).

Dowell JA, Reynolds EC, Pliakas TP, Mandel JR, Burke JM, Donovan LA, Mason CM.

J Hered. 2019 Mar 8. pii: esz013. doi: 10.1093/jhered/esz013. [Epub ahead of print]

PMID:
30847479
7.

Correction to: A Systematic Review of the Evaluation of Interventions to Tackle Children's Food Insecurity.

Holley CE, Mason C.

Curr Nutr Rep. 2019 Mar;8(1):28. doi: 10.1007/s13668-019-0260-7.

PMID:
30830565
8.

Urban metagenomics uncover antibiotic resistance reservoirs in coastal beach and sewage waters.

Fresia P, Antelo V, Salazar C, Giménez M, D'Alessandro B, Afshinnekoo E, Mason C, Gonnet GH, Iraola G.

Microbiome. 2019 Feb 28;7(1):35. doi: 10.1186/s40168-019-0648-z.

9.

Host plant and population source drive diversity of microbial gut communities in two polyphagous insects.

Jones AG, Mason CJ, Felton GW, Hoover K.

Sci Rep. 2019 Feb 26;9(1):2792. doi: 10.1038/s41598-019-39163-9.

10.

Conversations with ray Guillery on albinism: linking Siamese cat visual pathway connectivity to mouse retinal development.

Mason C.

Eur J Neurosci. 2019 Feb 23. doi: 10.1111/ejn.14396. [Epub ahead of print]

PMID:
30801828
11.

Elevated serum activity of MBL and ficolin-2 as biomarkers for progression to hepatocellular carcinoma in chronic HCV infection.

Jalal PJ, King BJ, Saeed A, Adedeji Y, Mason CP, Ball JK, Irving WL, McClure CP, Tarr AW.

Virology. 2019 Feb 12;530:99-106. doi: 10.1016/j.virol.2019.02.002. [Epub ahead of print]

PMID:
30798068
13.

In vitro activity of the novel oral antimicrobial SMT-571, with a new mechanism of action, against MDR and XDR Neisseria gonorrhoeae: future treatment option for gonorrhoea?

Jacobsson S, Mason C, Khan N, Meo P, Unemo M.

J Antimicrob Chemother. 2019 Feb 18. pii: dkz060. doi: 10.1093/jac/dkz060. [Epub ahead of print]

PMID:
30778550
14.

Long non-coding RNAs discriminate the stages and gene regulatory states of human humoral immune response.

Agirre X, Meydan C, Jiang Y, Garate L, Doane AS, Li Z, Verma A, Paiva B, Martín-Subero JI, Elemento O, Mason CE, Prosper F, Melnick A.

Nat Commun. 2019 Feb 18;10(1):821. doi: 10.1038/s41467-019-08679-z.

15.

A Systematic Review of the Evaluation of Interventions to Tackle Children's Food Insecurity.

Holley CE, Mason C.

Curr Nutr Rep. 2019 Mar;8(1):11-27. doi: 10.1007/s13668-019-0258-1. Review. Erratum in: Curr Nutr Rep. 2019 Mar 4;:.

PMID:
30762204
16.

Expression of human ficolin-2 in hepatocytes confers resistance to infection by diverse hepatotropic viruses.

Jalal PJ, Urbanowicz RA, Horncastle E, Pathak M, Goddard C, Saeed A, Mason CP, Ball JK, Irving WL, McClure CP, King BJ, Tarr AW.

J Med Microbiol. 2019 Feb 12. doi: 10.1099/jmm.0.000935. [Epub ahead of print]

PMID:
30747617
17.

Expression, Regulation, and Function of the Calmodulin Accessory Protein PCP4/PEP-19 in Myometrium.

He L, Lee GT, Zhou H, Buhimschi IA, Buhimschi CS, Weiner CP, Mason CW.

Reprod Sci. 2019 Feb 11:1933719119828072. doi: 10.1177/1933719119828072. [Epub ahead of print]

PMID:
30744532
18.

Single-molecule sequencing detection of N6-methyladenine in microbial reference materials.

McIntyre ABR, Alexander N, Grigorev K, Bezdan D, Sichtig H, Chiu CY, Mason CE.

Nat Commun. 2019 Feb 4;10(1):579. doi: 10.1038/s41467-019-08289-9.

19.

Determining the energetic and informational components of speech-on-speech masking in listeners with sensorineural hearing loss.

Kidd G Jr, Mason CR, Best V, Roverud E, Swaminathan J, Jennings T, Clayton K, Steven Colburn H.

J Acoust Soc Am. 2019 Jan;145(1):440. doi: 10.1121/1.5087555.

PMID:
30710924
20.

Comprehensive Paired Tumor/Germline Testing for Lynch Syndrome: Bringing Resolution to the Diagnostic Process.

Salvador MU, Truelson MRF, Mason C, Souders B, LaDuca H, Dougall B, Black MH, Fulk K, Profato J, Gutierrez S, Jasperson K, Tippin-Davis B, Lu HM, Gray P, Shah S, Chao EC, Ghahramani N, Landsverk M, Gau CL, Chen D, Pronold M.

J Clin Oncol. 2019 Mar 10;37(8):647-657. doi: 10.1200/JCO.18.00696. Epub 2019 Jan 31.

PMID:
30702970
21.

HIV-1 Fusion with CD4+ T cells Is Promoted by Proteins Involved in Endocytosis and Intracellular Membrane Trafficking.

Marin M, Kushnareva Y, Mason CS, Chanda SK, Melikyan GB.

Viruses. 2019 Jan 25;11(2). pii: E100. doi: 10.3390/v11020100.

22.

Toward unrestricted use of public genomic data.

Amann RI, Baichoo S, Blencowe BJ, Bork P, Borodovsky M, Brooksbank C, Chain PSG, Colwell RR, Daffonchio DG, Danchin A, de Lorenzo V, Dorrestein PC, Finn RD, Fraser CM, Gilbert JA, Hallam SJ, Hugenholtz P, Ioannidis JPA, Jansson JK, Kim JF, Klenk HP, Klotz MG, Knight R, Konstantinidis KT, Kyrpides NC, Mason CE, McHardy AC, Meyer F, Ouzounis CA, Patrinos AAN, Podar M, Pollard KS, Ravel J, Muñoz AR, Roberts RJ, Rosselló-Móra R, Sansone SA, Schloss PD, Schriml LM, Setubal JC, Sorek R, Stevens RL, Tiedje JM, Turjanski A, Tyson GW, Ussery DW, Weinstock GM, White O, Whitman WB, Xenarios I.

Science. 2019 Jan 25;363(6425):350-352. doi: 10.1126/science.aaw1280. No abstract available.

23.

Performance of the RACE Score for the Prehospital Identification of Large Vessel Occlusion Stroke in a Suburban/Rural EMS Service.

Dickson RL, Crowe RP, Patrick C, Crocker K, Aiken M, Adams A, Gleisberg GR, Nichols T, Mason C, Panchal AR.

Prehosp Emerg Care. 2019 Jan 22:1-7. doi: 10.1080/10903127.2019.1573281. [Epub ahead of print]

PMID:
30668202
24.

Specialized lysophosphatidic acid acyltransferases contribute to unusual fatty acid accumulation in exotic Euphorbiaceae seed oils.

Shockey J, Lager I, Stymne S, Kotapati HK, Sheffield J, Mason C, Bates PD.

Planta. 2019 Jan 4. doi: 10.1007/s00425-018-03086-y. [Epub ahead of print]

PMID:
30610363
25.

Nuclear-Cytoplasmic Transport Is a Therapeutic Target in Myelofibrosis.

Yan D, Pomicter AD, Tantravahi S, Mason CC, Senina AV, Ahmann JM, Wang Q, Than H, Patel AB, Heaton WL, Eiring AM, Clair PM, Gantz KC, Redwine HM, Swierczek SI, Halverson BJ, Baloglu E, Shacham S, Khorashad JS, Kelley TW, Salama ME, Miles RR, Boucher KM, Prchal JT, O'Hare T, Deininger MW.

Clin Cancer Res. 2018 Dec 18. doi: 10.1158/1078-0432.CCR-18-0959. [Epub ahead of print]

PMID:
30563936
26.

Minerva: an alignment- and reference-free approach to deconvolve Linked-Reads for metagenomics.

Danko DC, Meleshko D, Bezdan D, Mason C, Hajirasouliha I.

Genome Res. 2019 Jan;29(1):116-124. doi: 10.1101/gr.235499.118. Epub 2018 Dec 6.

27.

The impact of immigration detention on mental health: a systematic review.

von Werthern M, Robjant K, Chui Z, Schon R, Ottisova L, Mason C, Katona C.

BMC Psychiatry. 2018 Dec 6;18(1):382. doi: 10.1186/s12888-018-1945-y.

28.

Understanding Positive Youth Development in Sport Through the Voices of Indigenous Youth.

Strachan L, McHugh TL, Mason C.

J Sport Exerc Psychol. 2018 Dec 1;40(6):293-302. doi: 10.1123/jsep.2018-0035. Epub 2018 Dec 5.

PMID:
30517819
29.

Anatomical defences against bark beetles relate to degree of historical exposure between species and are allocated independently of chemical defences within trees.

Mason CJ, Keefover-Ring K, Villari C, Klutsch JG, Cook S, Bonello P, Erbilgin N, Raffa KF, Townsend PA.

Plant Cell Environ. 2019 Feb;42(2):633-646. doi: 10.1111/pce.13449. Epub 2018 Nov 25.

PMID:
30474119
30.

Multi-drug resistant Enterobacter bugandensis species isolated from the International Space Station and comparative genomic analyses with human pathogenic strains.

Singh NK, Bezdan D, Checinska Sielaff A, Wheeler K, Mason CE, Venkateswaran K.

BMC Microbiol. 2018 Nov 23;18(1):175. doi: 10.1186/s12866-018-1325-2.

31.

Outcomes After Laparoscopic Gastrostomy Suture Techniques in Children.

Mason CA, Skarda DE, Bucher BT.

J Surg Res. 2018 Dec;232:26-32. doi: 10.1016/j.jss.2018.05.022. Epub 2018 Jun 30.

PMID:
30463727
32.

Language Outcomes Improved Through Early Hearing Detection and Earlier Cochlear Implantation.

Yoshinaga-Itano C, Sedey AL, Wiggin M, Mason CA.

Otol Neurotol. 2018 Dec;39(10):1256-1263. doi: 10.1097/MAO.0000000000001976.

PMID:
30444842
33.

Oral polio vaccine response in the MAL-ED birth cohort study: Considerations for polio eradication strategies.

Pan WK, Seidman JC, Ali A, Hoest C, Mason C, Mondal D, Knobler SL, Bessong P; MAL-ED Network Investigators.

Vaccine. 2019 Jan 7;37(2):352-365. doi: 10.1016/j.vaccine.2018.05.080. Epub 2018 Nov 12.

34.

High levels of serum glypican-1 indicate poor prognosis in pancreatic ductal adenocarcinoma.

Zhou CY, Dong YP, Sun X, Sui X, Zhu H, Zhao YQ, Zhang YY, Mason C, Zhu Q, Han SX.

Cancer Med. 2018 Nov;7(11):5525-5533. doi: 10.1002/cam4.1833. Epub 2018 Oct 24.

35.

[18F]FE-OTS964: a Small Molecule Targeting TOPK for In Vivo PET Imaging in a Glioblastoma Xenograft Model.

Pirovano G, Roberts S, Brand C, Donabedian PL, Mason C, de Souza PD, Higgins GS, Reiner T.

Mol Imaging Biol. 2018 Oct 24. doi: 10.1007/s11307-018-1288-6. [Epub ahead of print]

PMID:
30357568
36.

Use of quantitative molecular diagnostic methods to assess the aetiology, burden, and clinical characteristics of diarrhoea in children in low-resource settings: a reanalysis of the MAL-ED cohort study.

Platts-Mills JA, Liu J, Rogawski ET, Kabir F, Lertsethtakarn P, Siguas M, Khan SS, Praharaj I, Murei A, Nshama R, Mujaga B, Havt A, Maciel IA, McMurry TL, Operario DJ, Taniuchi M, Gratz J, Stroup SE, Roberts JH, Kalam A, Aziz F, Qureshi S, Islam MO, Sakpaisal P, Silapong S, Yori PP, Rajendiran R, Benny B, McGrath M, McCormick BJJ, Seidman JC, Lang D, Gottlieb M, Guerrant RL, Lima AAM, Leite JP, Samie A, Bessong PO, Page N, Bodhidatta L, Mason C, Shrestha S, Kiwelu I, Mduma ER, Iqbal NT, Bhutta ZA, Ahmed T, Haque R, Kang G, Kosek MN, Houpt ER; MAL-ED Network Investigators.

Lancet Glob Health. 2018 Dec;6(12):e1309-e1318. doi: 10.1016/S2214-109X(18)30349-8. Epub 2018 Oct 1.

37.

Use of quantitative molecular diagnostic methods to investigate the effect of enteropathogen infections on linear growth in children in low-resource settings: longitudinal analysis of results from the MAL-ED cohort study.

Rogawski ET, Liu J, Platts-Mills JA, Kabir F, Lertsethtakarn P, Siguas M, Khan SS, Praharaj I, Murei A, Nshama R, Mujaga B, Havt A, Maciel IA, Operario DJ, Taniuchi M, Gratz J, Stroup SE, Roberts JH, Kalam A, Aziz F, Qureshi S, Islam MO, Sakpaisal P, Silapong S, Yori PP, Rajendiran R, Benny B, McGrath M, Seidman JC, Lang D, Gottlieb M, Guerrant RL, Lima AAM, Leite JP, Samie A, Bessong PO, Page N, Bodhidatta L, Mason C, Shrestha S, Kiwelu I, Mduma ER, Iqbal NT, Bhutta ZA, Ahmed T, Haque R, Kang G, Kosek MN, Houpt ER; MAL-ED Network Investigators.

Lancet Glob Health. 2018 Dec;6(12):e1319-e1328. doi: 10.1016/S2214-109X(18)30351-6. Epub 2018 Oct 1.

38.

Bioprocessing strategies to enhance the challenging isolation of neuro-regenerative cells from olfactory mucosa.

Georgiou M, Reis JND, Wood R, Esteban PP, Roberton V, Mason C, Li D, Li Y, Choi D, Wall I.

Sci Rep. 2018 Sep 27;8(1):14440. doi: 10.1038/s41598-018-32748-w.

39.

Activation of Wnt signaling reduces ipsilaterally projecting retinal ganglion cells in pigmented retina.

Iwai-Takekoshi L, Balasubramanian R, Sitko A, Khan R, Weinreb S, Robinson K, Mason C.

Development. 2018 Nov 2;145(21). pii: dev163212. doi: 10.1242/dev.163212.

PMID:
30254141
40.

A Combined In Vitro/In Silico Approach to Identifying Off-Target Receptor Toxicity.

Leedale J, Sharkey KJ, Colley HE, Norton ÁM, Peeney D, Mason CL, Sathish JG, Murdoch C, Sharma P, Webb SD.

iScience. 2018 Jun 29;4:84-96. doi: 10.1016/j.isci.2018.05.012. Epub 2018 May 18.

41.

Late Pleistocene glacial transitions in North America altered major river drainages, as revealed by deep-sea sediment.

Fildani A, Hessler AM, Mason CC, McKay MP, Stockli DF.

Sci Rep. 2018 Sep 14;8(1):13839. doi: 10.1038/s41598-018-32268-7.

42.

Regulation of human placental drug transporters in HCV infection and their influence on direct acting antiviral medications.

Pfeifer E, Parrott J, Lee GT, Domalakes E, Zhou H, He L, Mason CW.

Placenta. 2018 Sep;69:32-39. doi: 10.1016/j.placenta.2018.07.005. Epub 2018 Jul 10.

PMID:
30213482
43.

Severe summer scour syndrome in recently turned out dairy calves.

Hateley G, Mason C, Henderson K, Fagan S, Millar M, Neale S.

Vet Rec. 2018 Sep 8;183(9):300. doi: 10.1136/vr.k3773. No abstract available.

PMID:
30194127
44.

The Trusted Server: A secure computational environment for privacy compliant evaluations on plain personal data.

von Bomhard N, Ahlborn B, Mason C, Mansmann U.

PLoS One. 2018 Sep 6;13(9):e0202752. doi: 10.1371/journal.pone.0202752. eCollection 2018.

45.

Co-option of microbial associates by insects and their impact on plant-folivore interactions.

Mason CJ, Jones AG, Felton GW.

Plant Cell Environ. 2019 Mar;42(3):1078-1086. doi: 10.1111/pce.13430. Epub 2018 Sep 24. Review.

PMID:
30151965
46.

What Contribution Did Economic Evidence Make to the Adoption of Universal Newborn Hearing Screening Policies in the United States?

Grosse SD, Mason CA, Gaffney M, Thomson V, White KR.

Int J Neonatal Screen. 2018;4(3):25. doi: 10.3390/ijns4030025. Epub 2018 Jul 20.

47.

Diagnosis of gestational diabetes: a 'teachable moment'.

Okely J, Mason C, Collier A, Dunnachie N, Swanson V.

Diabet Med. 2019 Feb;36(2):184-194. doi: 10.1111/dme.13803. Epub 2018 Sep 3.

PMID:
30118538
48.

N6-methyladenosine modification of hepatitis B virus RNA differentially regulates the viral life cycle.

Imam H, Khan M, Gokhale NS, McIntyre ABR, Kim GW, Jang JY, Kim SJ, Mason CE, Horner SM, Siddiqui A.

Proc Natl Acad Sci U S A. 2018 Aug 28;115(35):8829-8834. doi: 10.1073/pnas.1808319115. Epub 2018 Aug 13.

49.

The use of infrared thermography for detecting digital dermatitis in dairy cattle: What is the best measure of temperature and foot location to use?

Harris-Bridge G, Young L, Handel I, Farish M, Mason C, Mitchell MA, Haskell MJ.

Vet J. 2018 Jul;237:26-33. doi: 10.1016/j.tvjl.2018.05.008. Epub 2018 May 28.

PMID:
30089541
50.

Cyclopropane fatty acid biosynthesis in plants: phylogenetic and biochemical analysis of Litchi Kennedy pathway and acyl editing cycle genes.

Shockey J, Kuhn D, Chen T, Cao H, Freeman B, Mason C.

Plant Cell Rep. 2018 Nov;37(11):1571-1583. doi: 10.1007/s00299-018-2329-y. Epub 2018 Aug 6.

PMID:
30083958

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