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Items: 1 to 50 of 154

1.

Non-coding RNAs and transposable elements in plant genomes: emergence, regulatory mechanisms and roles in plant development and stress responses.

Hou J, Lu D, Mason AS, Li B, Xiao M, An S, Fu D.

Planta. 2019 Jul;250(1):23-40. doi: 10.1007/s00425-019-03166-7. Epub 2019 Apr 16. Review.

PMID:
30993403
2.

Inherited allelic variants and novel karyotype changes influence fertility and genome stability in Brassica allohexaploids.

Gaebelein R, Schiessl SV, Samans B, Batley J, Mason AS.

New Phytol. 2019 Mar 19. doi: 10.1111/nph.15804. [Epub ahead of print]

PMID:
30887525
3.

Specificity of the Metallothionein-1 Response by Cadmium-Exposed Normal Human Urothelial Cells.

McNeill RV, Mason AS, Hodson ME, Catto JWF, Southgate J.

Int J Mol Sci. 2019 Mar 17;20(6). pii: E1344. doi: 10.3390/ijms20061344.

4.

Development of High-Density SNP Markers and Their Application in Evaluating Genetic Diversity and Population Structure in Elaeis guineensis.

Xia W, Luo T, Zhang W, Mason AS, Huang D, Huang X, Tang W, Dou Y, Zhang C, Xiao Y.

Front Plant Sci. 2019 Feb 12;10:130. doi: 10.3389/fpls.2019.00130. eCollection 2019.

5.

NBS-Encoding Genes in Brassica napus Evolved Rapidly After Allopolyploidization and Co-localize With Known Disease Resistance Loci.

Fu Y, Zhang Y, Mason AS, Lin B, Zhang D, Yu H, Fu D.

Front Plant Sci. 2019 Jan 30;10:26. doi: 10.3389/fpls.2019.00026. eCollection 2019.

6.

Broadening the bread wheat D genome.

Mirzaghaderi G, Mason AS.

Theor Appl Genet. 2019 May;132(5):1295-1307. doi: 10.1007/s00122-019-03299-z. Epub 2019 Feb 10. Review.

PMID:
30739154
7.

Genetic control of fatty acid composition in coconut (Cocos nucifera), African oil palm (Elaeis guineensis), and date palm (Phoenix dactylifera).

Xiao Y, Xia W, Mason AS, Cao Z, Fan H, Zhang B, Zhang J, Ma Z, Peng M, Huang D.

Planta. 2019 Feb;249(2):333-350. doi: 10.1007/s00425-018-3003-x. Epub 2018 Sep 7.

PMID:
30194535
8.

A quartet pollen phenotype identified in a population of Brassica interspecific hybrids shows incomplete penetrance and variable response to temperature.

Gohar M, Gäbelein R, Mason AS.

Plant Biol (Stuttg). 2018 Sep;20(5):894-901. doi: 10.1111/plb.12854. Epub 2018 Jun 25.

PMID:
29883021
9.

Genome-wide identification, putative functionality and interactions between lncRNAs and miRNAs in Brassica species.

Zhang J, Wei L, Jiang J, Mason AS, Li H, Cui C, Chai L, Zheng B, Zhu Y, Xia Q, Jiang L, Fu D.

Sci Rep. 2018 Mar 21;8(1):4960. doi: 10.1038/s41598-018-23334-1.

10.

The long and short of doubling down: polyploidy, epigenetics, and the temporal dynamics of genome fractionation.

Wendel JF, Lisch D, Hu G, Mason AS.

Curr Opin Genet Dev. 2018 Apr;49:1-7. doi: 10.1016/j.gde.2018.01.004. Epub 2018 Feb 10. Review.

PMID:
29438956
11.

Earliness traits in rapeseed (Brassica napus): SNP loci and candidate genes identified by genome-wide association analysis.

Zhou Q, Han D, Mason AS, Zhou C, Zheng W, Li Y, Wu C, Fu D, Huang Y.

DNA Res. 2017 Dec 11. doi: 10.1093/dnares/dsx052. [Epub ahead of print]

12.

Correction to: Incorporating pleiotropic quantitative trait loci in dissection of complex traits: seed yield in rapeseed as an example.

Luo Z, Wang M, Long Y, Huang Y, Shi L, Zhang C, Liu X, Fitt BDL, Xiang J, Mason AS, Snowdon RJ, Liu P, Meng J, Zou J.

Theor Appl Genet. 2018 Feb;131(2):497. doi: 10.1007/s00122-017-3005-2.

PMID:
29189874
13.

Genetic changes in a novel breeding population of Brassica napus synthesized from hundreds of crosses between B. rapa and B. carinata.

Zou J, Hu D, Mason AS, Shen X, Wang X, Wang N, Grandke F, Wang M, Chang S, Snowdon RJ, Meng J.

Plant Biotechnol J. 2018 Feb;16(2):507-519. doi: 10.1111/pbi.12791. Epub 2017 Aug 16.

14.

Revisiting Pivotal-Differential Genome Evolution in Wheat.

Mirzaghaderi G, Mason AS.

Trends Plant Sci. 2017 Aug;22(8):674-684. doi: 10.1016/j.tplants.2017.06.003. Epub 2017 Jun 22. Review.

PMID:
28648886
15.

Genome-Wide SNP Markers Based on SLAF-Seq Uncover Breeding Traces in Rapeseed (Brassica napus L.).

Zhou Q, Zhou C, Zheng W, Mason AS, Fan S, Wu C, Fu D, Huang Y.

Front Plant Sci. 2017 Apr 28;8:648. doi: 10.3389/fpls.2017.00648. eCollection 2017.

16.

Dynamic nucleolar activity in wheat × Aegilops hybrids: evidence of C-genome dominance.

Mirzaghaderi G, Abdolmalaki Z, Zohouri M, Moradi Z, Mason AS.

Plant Cell Rep. 2017 Aug;36(8):1277-1285. doi: 10.1007/s00299-017-2152-x. Epub 2017 Apr 29.

PMID:
28456843
17.

Incorporating pleiotropic quantitative trait loci in dissection of complex traits: seed yield in rapeseed as an example.

Luo Z, Wang M, Long Y, Huang Y, Shi L, Zhang C, Liu X, Fitt BDL, Xiang J, Mason AS, Snowdon RJ, Liu P, Meng J, Zou J.

Theor Appl Genet. 2017 Aug;130(8):1569-1585. doi: 10.1007/s00122-017-2911-7. Epub 2017 Apr 28. Erratum in: Theor Appl Genet. 2017 Nov 30;:.

18.

A user guide to the Brassica 60K Illumina Infinium™ SNP genotyping array.

Mason AS, Higgins EE, Snowdon RJ, Batley J, Stein A, Werner C, Parkin IA.

Theor Appl Genet. 2017 Apr;130(4):621-633. doi: 10.1007/s00122-016-2849-1. Epub 2017 Feb 20. Review.

PMID:
28220206
19.

Segregation for fertility and meiotic stability in novel Brassica allohexaploids.

Mwathi MW, Gupta M, Atri C, Banga SS, Batley J, Mason AS.

Theor Appl Genet. 2017 Apr;130(4):767-776. doi: 10.1007/s00122-016-2850-8. Epub 2017 Jan 17.

PMID:
28097399
20.

A New Chicken Genome Assembly Provides Insight into Avian Genome Structure.

Warren WC, Hillier LW, Tomlinson C, Minx P, Kremitzki M, Graves T, Markovic C, Bouk N, Pruitt KD, Thibaud-Nissen F, Schneider V, Mansour TA, Brown CT, Zimin A, Hawken R, Abrahamsen M, Pyrkosz AB, Morisson M, Fillon V, Vignal A, Chow W, Howe K, Fulton JE, Miller MM, Lovell P, Mello CV, Wirthlin M, Mason AS, Kuo R, Burt DW, Dodgson JB, Cheng HH.

G3 (Bethesda). 2017 Jan 5;7(1):109-117. doi: 10.1534/g3.116.035923.

21.

Genome-Wide Identification and Transferability of Microsatellite Markers between Palmae Species.

Xiao Y, Xia W, Ma J, Mason AS, Fan H, Shi P, Lei X, Ma Z, Peng M.

Front Plant Sci. 2016 Oct 25;7:1578. eCollection 2016.

22.

Cytogenetic and Molecular Characterization of B-Genome Introgression Lines of Brassica napus L.

Dhaliwal I, Mason AS, Banga S, Bharti S, Kaur B, Gurung AM, Salisbury PA, Batley J, Banga SS.

G3 (Bethesda). 2017 Jan 5;7(1):77-86. doi: 10.1534/g3.116.036442.

23.

Oilseed rape: learning about ancient and recent polyploid evolution from a recent crop species.

Mason AS, Snowdon RJ.

Plant Biol (Stuttg). 2016 Nov;18(6):883-892. doi: 10.1111/plb.12462. Epub 2016 May 6. Review.

PMID:
27063780
24.

A new look at the LTR retrotransposon content of the chicken genome.

Mason AS, Fulton JE, Hocking PM, Burt DW.

BMC Genomics. 2016 Aug 30;17:688. doi: 10.1186/s12864-016-3043-1.

25.

Small RNA changes in synthetic Brassica napus.

Fu Y, Xiao M, Yu H, Mason AS, Yin J, Li J, Zhang D, Fu D.

Planta. 2016 Sep;244(3):607-22. doi: 10.1007/s00425-016-2529-z. Epub 2016 Apr 23.

PMID:
27107747
26.

Ethnic Barriers to Utilization of Total Joint Arthroplasty Among Chinese Immigrants in the United States.

Alley MC, Mason AS, Tybor DJ, Pevear ME, Baratz MD, Smith EL.

J Arthroplasty. 2016 Sep;31(9):1873-1877.e2. doi: 10.1016/j.arth.2016.02.046. Epub 2016 Mar 3.

PMID:
27026646
27.

Molecular-cytogenetic characterization of C-genome chromosome substitution lines in Brassica juncea (L.) Czern and Coss.

Gupta M, Mason AS, Batley J, Bharti S, Banga S, Banga SS.

Theor Appl Genet. 2016 Jun;129(6):1153-66. doi: 10.1007/s00122-016-2692-4. Epub 2016 Feb 25.

PMID:
26913722
28.

Unreduced gamete formation in wheat × Aegilops spp. hybrids is genotype specific and prevented by shared homologous subgenomes.

Fakhri Z, Mirzaghaderi G, Ahmadian S, Mason AS.

Plant Cell Rep. 2016 May;35(5):1143-54. doi: 10.1007/s00299-016-1951-9. Epub 2016 Feb 16.

PMID:
26883221
29.

Identification of Putative Candidate Genes for Water Stress Tolerance in Canola (Brassica napus).

Zhang J, Mason AS, Wu J, Liu S, Zhang X, Luo T, Redden R, Batley J, Hu L, Yan G.

Front Plant Sci. 2015 Nov 27;6:1058. doi: 10.3389/fpls.2015.01058. eCollection 2015.

30.

Centromere Locations in Brassica A and C Genomes Revealed Through Half-Tetrad Analysis.

Mason AS, Rousseau-Gueutin M, Morice J, Bayer PE, Besharat N, Cousin A, Pradhan A, Parkin IA, Chèvre AM, Batley J, Nelson MN.

Genetics. 2016 Feb;202(2):513-23. doi: 10.1534/genetics.115.183210. Epub 2015 Nov 27.

31.

Effects of genome structure variation, homeologous genes and repetitive DNA on polyploid crop research in the age of genomics.

Fu D, Mason AS, Xiao M, Yan H.

Plant Sci. 2016 Jan;242:37-46. doi: 10.1016/j.plantsci.2015.09.017. Epub 2015 Sep 26. Review.

PMID:
26566823
32.

Genome-wide analysis reveals the extent of EAV-HP integration in domestic chicken.

Wragg D, Mason AS, Yu L, Kuo R, Lawal RA, Desta TT, Mwacharo JM, Cho CY, Kemp S, Burt DW, Hanotte O.

BMC Genomics. 2015 Oct 14;16:784. doi: 10.1186/s12864-015-1954-x.

33.

Creating new interspecific hybrid and polyploid crops.

Mason AS, Batley J.

Trends Biotechnol. 2015 Aug;33(8):436-41. doi: 10.1016/j.tibtech.2015.06.004. Epub 2015 Jul 8. Review.

PMID:
26164645
34.

Microspore culture reveals complex meiotic behaviour in a trigenomic Brassica hybrid.

Mason AS, Takahira J, Atri C, Samans B, Hayward A, Cowling WA, Batley J, Nelson MN.

BMC Plant Biol. 2015 Jul 8;15:173. doi: 10.1186/s12870-015-0555-9.

35.

High-resolution skim genotyping by sequencing reveals the distribution of crossovers and gene conversions in Cicer arietinum and Brassica napus.

Bayer PE, Ruperao P, Mason AS, Stiller J, Chan CK, Hayashi S, Long Y, Meng J, Sutton T, Visendi P, Varshney RK, Batley J, Edwards D.

Theor Appl Genet. 2015 Jun;128(6):1039-47. doi: 10.1007/s00122-015-2488-y. Epub 2015 Mar 10.

PMID:
25754422
36.

High-throughput genotyping for species identification and diversity assessment in germplasm collections.

Mason AS, Zhang J, Tollenaere R, Vasquez Teuber P, Dalton-Morgan J, Hu L, Yan G, Edwards D, Redden R, Batley J.

Mol Ecol Resour. 2015 Sep;15(5):1091-101. doi: 10.1111/1755-0998.12379. Epub 2015 Feb 21.

PMID:
25641370
37.

Exploiting transcriptome data for the development and characterization of gene-based SSR markers related to cold tolerance in oil palm (Elaeis guineensis).

Xiao Y, Zhou L, Xia W, Mason AS, Yang Y, Ma Z, Peng M.

BMC Plant Biol. 2014 Dec 19;14:384. doi: 10.1186/s12870-014-0384-2.

38.

RNA-seq analysis of oil palm under cold stress reveals a different C-repeat binding factor (CBF) mediated gene expression pattern in Elaeis guineensis compared to other species.

Lei X, Xiao Y, Xia W, Mason AS, Yang Y, Ma Z, Peng M.

PLoS One. 2014 Dec 5;9(12):e114482. doi: 10.1371/journal.pone.0114482. eCollection 2014.

39.

Unreduced gametes: meiotic mishap or evolutionary mechanism?

Mason AS, Pires JC.

Trends Genet. 2015 Jan;31(1):5-10. doi: 10.1016/j.tig.2014.09.011. Epub 2014 Oct 16. Review.

PMID:
25445549
40.

Challenges of genotyping polyploid species.

Mason AS.

Methods Mol Biol. 2015;1245:161-8. doi: 10.1007/978-1-4939-1966-6_12. Review.

PMID:
25373756
41.

SSR genotyping.

Mason AS.

Methods Mol Biol. 2015;1245:77-89. doi: 10.1007/978-1-4939-1966-6_6.

PMID:
25373750
42.

A high-throughput SNP array in the amphidiploid species Brassica napus shows diversity in resistance genes.

Dalton-Morgan J, Hayward A, Alamery S, Tollenaere R, Mason AS, Campbell E, Patel D, Lorenc MT, Yi B, Long Y, Meng J, Raman R, Raman H, Lawley C, Edwards D, Batley J.

Funct Integr Genomics. 2014 Dec;14(4):643-55. doi: 10.1007/s10142-014-0391-2. Epub 2014 Aug 22.

PMID:
25147024
43.

Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea.

Parkin IA, Koh C, Tang H, Robinson SJ, Kagale S, Clarke WE, Town CD, Nixon J, Krishnakumar V, Bidwell SL, Denoeud F, Belcram H, Links MG, Just J, Clarke C, Bender T, Huebert T, Mason AS, Pires JC, Barker G, Moore J, Walley PG, Manoli S, Batley J, Edwards D, Nelson MN, Wang X, Paterson AH, King G, Bancroft I, Chalhoub B, Sharpe AG.

Genome Biol. 2014 Jun 10;15(6):R77. doi: 10.1186/gb-2014-15-6-r77.

44.

Analysis of multiple transcriptomes of the African oil palm (Elaeis guineensis) to identify reference genes for RT-qPCR.

Xia W, Mason AS, Xiao Y, Liu Z, Yang Y, Lei X, Wu X, Ma Z, Peng M.

J Biotechnol. 2014 Aug 20;184:63-73. doi: 10.1016/j.jbiotec.2014.05.008. Epub 2014 May 23.

PMID:
24862192
45.

The fate of chromosomes and alleles in an allohexaploid Brassica population.

Mason AS, Nelson MN, Takahira J, Cowling WA, Alves GM, Chaudhuri A, Chen N, Ragu ME, Dalton-Morgan J, Coriton O, Huteau V, Eber F, Chèvre AM, Batley J.

Genetics. 2014 May;197(1):273-83. doi: 10.1534/genetics.113.159574. Epub 2014 Feb 20.

46.

High-resolution molecular karyotyping uncovers pairing between ancestrally related Brassica chromosomes.

Mason AS, Batley J, Bayer PE, Hayward A, Cowling WA, Nelson MN.

New Phytol. 2014 May;202(3):964-74. doi: 10.1111/nph.12706. Epub 2014 Jan 28.

47.

Extensive tRNA gene changes in synthetic Brassica napus.

Wei L, An Z, Mason AS, Xiao M, Guo Y, Yin J, Li J, Fu D.

J Mol Evol. 2014 Jan;78(1):38-49. doi: 10.1007/s00239-013-9598-4. Epub 2013 Nov 23.

PMID:
24271856
48.

Transposon variation by order during allopolyploidisation between Brassica oleracea and Brassica rapa.

An Z, Tang Z, Ma B, Mason AS, Guo Y, Yin J, Gao C, Wei L, Li J, Fu D.

Plant Biol (Stuttg). 2014 Jul;16(4):825-35. doi: 10.1111/plb.12121. Epub 2013 Oct 31.

PMID:
24176077
49.

Identification of genome-wide single nucleotide polymorphisms in allopolyploid crop Brassica napus.

Huang S, Deng L, Guan M, Li J, Lu K, Wang H, Fu D, Mason AS, Liu S, Hua W.

BMC Genomics. 2013 Oct 20;14:717. doi: 10.1186/1471-2164-14-717.

50.

Horizontal gene transfer in plants.

Gao C, Ren X, Mason AS, Liu H, Xiao M, Li J, Fu D.

Funct Integr Genomics. 2014 Mar;14(1):23-9. doi: 10.1007/s10142-013-0345-0. Epub 2013 Oct 17. Review.

PMID:
24132513

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